Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:01234:01240
Extra
PDB:
ATOM 1 O3' A A1233 5.039 79.905 67.992 1.00 54.37 O
ATOM 2 P C A1234 5.395 80.078 66.437 1.00 55.75 P
ATOM 3 OP1 C A1234 4.785 78.948 65.698 1.00 55.69 O
ATOM 4 OP2 C A1234 6.857 80.320 66.328 1.00 57.05 O
ATOM 5 O5' C A1234 4.624 81.408 66.035 1.00 53.09 O
ATOM 6 C5' C A1234 3.204 81.456 66.120 1.00 52.15 C
ATOM 7 C4' C A1234 2.700 82.831 65.797 1.00 52.17 C
ATOM 8 O4' C A1234 3.085 83.754 66.838 1.00 52.69 O
ATOM 9 C3' C A1234 3.257 83.475 64.550 1.00 53.17 C
ATOM 10 O3' C A1234 2.675 82.953 63.375 1.00 57.06 O
ATOM 11 C2' C A1234 2.910 84.933 64.790 1.00 53.29 C
ATOM 12 O2' C A1234 1.550 85.217 64.557 1.00 53.39 O
ATOM 13 C1' C A1234 3.204 85.055 66.285 1.00 53.63 C
ATOM 14 N1 C A1234 4.573 85.546 66.517 1.00 55.57 N
ATOM 15 C2 C A1234 4.788 86.932 66.575 1.00 55.93 C
ATOM 16 O2 C A1234 3.812 87.699 66.505 1.00 56.59 O
ATOM 17 N3 C A1234 6.049 87.397 66.713 1.00 55.74 N
ATOM 18 C4 C A1234 7.068 86.543 66.811 1.00 55.80 C
ATOM 19 N4 C A1234 8.295 87.052 66.933 1.00 56.33 N
ATOM 20 C5 C A1234 6.875 85.129 66.787 1.00 55.14 C
ATOM 21 C6 C A1234 5.626 84.679 66.643 1.00 54.73 C
ATOM 22 P U A1235 3.616 82.604 62.124 1.00 60.54 P
ATOM 23 OP1 U A1235 2.787 81.992 61.059 1.00 60.94 O
ATOM 24 OP2 U A1235 4.790 81.865 62.650 1.00 60.12 O
ATOM 25 O5' U A1235 4.096 84.039 61.628 1.00 60.53 O
TER
ATOM 1 O3' A B1239 8.077 98.603 66.272 1.00 90.41 O
ATOM 2 P C B1240 7.431 98.407 67.733 1.00 90.09 P
ATOM 3 OP1 C B1240 7.433 99.730 68.409 1.00 90.69 O
ATOM 4 OP2 C B1240 8.047 97.232 68.410 1.00 89.66 O
ATOM 5 O5' C B1240 5.912 98.056 67.440 1.00 88.03 O
ATOM 6 C5' C B1240 5.121 97.433 68.443 1.00 83.40 C
ATOM 7 C4' C B1240 3.814 96.972 67.868 1.00 81.06 C
ATOM 8 O4' C B1240 4.023 96.048 66.771 1.00 79.77 O
ATOM 9 C3' C B1240 3.025 96.170 68.869 1.00 79.80 C
ATOM 10 O3' C B1240 2.355 97.046 69.736 1.00 78.43 O
ATOM 11 C2' C B1240 2.113 95.328 67.997 1.00 79.41 C
ATOM 12 O2' C B1240 0.975 96.042 67.558 1.00 79.66 O
ATOM 13 C1' C B1240 3.049 95.016 66.825 1.00 78.94 C
ATOM 14 N1 C B1240 3.755 93.728 66.943 1.00 78.37 N
ATOM 15 C2 C B1240 3.016 92.537 66.870 1.00 79.07 C
ATOM 16 O2 C B1240 1.780 92.597 66.762 1.00 79.91 O
ATOM 17 N3 C B1240 3.668 91.353 66.926 1.00 78.58 N
ATOM 18 C4 C B1240 4.995 91.328 67.064 1.00 78.61 C
ATOM 19 N4 C B1240 5.596 90.140 67.099 1.00 79.40 N
ATOM 20 C5 C B1240 5.765 92.521 67.170 1.00 78.45 C
ATOM 21 C6 C B1240 5.112 93.686 67.106 1.00 78.00 C
ATOM 22 P U B1241 2.530 96.854 71.305 1.00 77.77 P
ATOM 23 OP1 U B1241 1.797 97.969 71.946 1.00 78.36 O
ATOM 24 OP2 U B1241 3.971 96.655 71.596 1.00 76.87 O
ATOM 25 O5' U B1241 1.753 95.488 71.564 1.00 78.05 O
TER
ATOM 2 P C A1234 5.395 80.078 66.437 1.00 55.75 P
ATOM 3 OP1 C A1234 4.785 78.948 65.698 1.00 55.69 O
ATOM 4 OP2 C A1234 6.857 80.320 66.328 1.00 57.05 O
ATOM 5 O5' C A1234 4.624 81.408 66.035 1.00 53.09 O
ATOM 6 C5' C A1234 3.204 81.456 66.120 1.00 52.15 C
ATOM 7 C4' C A1234 2.700 82.831 65.797 1.00 52.17 C
ATOM 8 O4' C A1234 3.085 83.754 66.838 1.00 52.69 O
ATOM 9 C3' C A1234 3.257 83.475 64.550 1.00 53.17 C
ATOM 10 O3' C A1234 2.675 82.953 63.375 1.00 57.06 O
ATOM 11 C2' C A1234 2.910 84.933 64.790 1.00 53.29 C
ATOM 12 O2' C A1234 1.550 85.217 64.557 1.00 53.39 O
ATOM 13 C1' C A1234 3.204 85.055 66.285 1.00 53.63 C
ATOM 14 N1 C A1234 4.573 85.546 66.517 1.00 55.57 N
ATOM 15 C2 C A1234 4.788 86.932 66.575 1.00 55.93 C
ATOM 16 O2 C A1234 3.812 87.699 66.505 1.00 56.59 O
ATOM 17 N3 C A1234 6.049 87.397 66.713 1.00 55.74 N
ATOM 18 C4 C A1234 7.068 86.543 66.811 1.00 55.80 C
ATOM 19 N4 C A1234 8.295 87.052 66.933 1.00 56.33 N
ATOM 20 C5 C A1234 6.875 85.129 66.787 1.00 55.14 C
ATOM 21 C6 C A1234 5.626 84.679 66.643 1.00 54.73 C
ATOM 22 P U A1235 3.616 82.604 62.124 1.00 60.54 P
ATOM 23 OP1 U A1235 2.787 81.992 61.059 1.00 60.94 O
ATOM 24 OP2 U A1235 4.790 81.865 62.650 1.00 60.12 O
ATOM 25 O5' U A1235 4.096 84.039 61.628 1.00 60.53 O
TER
ATOM 1 O3' A B1239 8.077 98.603 66.272 1.00 90.41 O
ATOM 2 P C B1240 7.431 98.407 67.733 1.00 90.09 P
ATOM 3 OP1 C B1240 7.433 99.730 68.409 1.00 90.69 O
ATOM 4 OP2 C B1240 8.047 97.232 68.410 1.00 89.66 O
ATOM 5 O5' C B1240 5.912 98.056 67.440 1.00 88.03 O
ATOM 6 C5' C B1240 5.121 97.433 68.443 1.00 83.40 C
ATOM 7 C4' C B1240 3.814 96.972 67.868 1.00 81.06 C
ATOM 8 O4' C B1240 4.023 96.048 66.771 1.00 79.77 O
ATOM 9 C3' C B1240 3.025 96.170 68.869 1.00 79.80 C
ATOM 10 O3' C B1240 2.355 97.046 69.736 1.00 78.43 O
ATOM 11 C2' C B1240 2.113 95.328 67.997 1.00 79.41 C
ATOM 12 O2' C B1240 0.975 96.042 67.558 1.00 79.66 O
ATOM 13 C1' C B1240 3.049 95.016 66.825 1.00 78.94 C
ATOM 14 N1 C B1240 3.755 93.728 66.943 1.00 78.37 N
ATOM 15 C2 C B1240 3.016 92.537 66.870 1.00 79.07 C
ATOM 16 O2 C B1240 1.780 92.597 66.762 1.00 79.91 O
ATOM 17 N3 C B1240 3.668 91.353 66.926 1.00 78.58 N
ATOM 18 C4 C B1240 4.995 91.328 67.064 1.00 78.61 C
ATOM 19 N4 C B1240 5.596 90.140 67.099 1.00 79.40 N
ATOM 20 C5 C B1240 5.765 92.521 67.170 1.00 78.45 C
ATOM 21 C6 C B1240 5.112 93.686 67.106 1.00 78.00 C
ATOM 22 P U B1241 2.530 96.854 71.305 1.00 77.77 P
ATOM 23 OP1 U B1241 1.797 97.969 71.946 1.00 78.36 O
ATOM 24 OP2 U B1241 3.971 96.655 71.596 1.00 76.87 O
ATOM 25 O5' U B1241 1.753 95.488 71.564 1.00 78.05 O
TER
Atoms:
C2: (4.788,86.932,66.575)
OP1: (4.785,78.948,65.698)
OP2: (6.857,80.320,66.328)
C4: (7.068,86.543,66.811)
O5': (4.624,81.408,66.035)
C3': (3.257,83.475,64.550)
C1': (3.204,85.055,66.285)
O4': (3.085,83.754,66.838)
C5': (3.204,81.456,66.120)
P: (5.395,80.078,66.437)
O2: (3.812,87.699,66.505)
C4': (2.700,82.831,65.797)
C2': (2.910,84.933,64.790)
O2': (1.550,85.217,64.557)
N1: (4.573,85.546,66.517)
N3: (6.049,87.397,66.713)
N4: (8.295,87.052,66.933)
C6: (5.626,84.679,66.643)
C5: (6.875,85.129,66.787)
O3': (2.675,82.953,63.375)
OP1: (4.785,78.948,65.698)
OP2: (6.857,80.320,66.328)
C4: (7.068,86.543,66.811)
O5': (4.624,81.408,66.035)
C3': (3.257,83.475,64.550)
C1': (3.204,85.055,66.285)
O4': (3.085,83.754,66.838)
C5': (3.204,81.456,66.120)
P: (5.395,80.078,66.437)
O2: (3.812,87.699,66.505)
C4': (2.700,82.831,65.797)
C2': (2.910,84.933,64.790)
O2': (1.550,85.217,64.557)
N1: (4.573,85.546,66.517)
N3: (6.049,87.397,66.713)
N4: (8.295,87.052,66.933)
C6: (5.626,84.679,66.643)
C5: (6.875,85.129,66.787)
O3': (2.675,82.953,63.375)
C2: (3.016,92.537,66.870)
OP1: (7.433,99.730,68.409)
OP2: (8.047,97.232,68.410)
C4: (4.995,91.328,67.064)
O5': (5.912,98.056,67.440)
C3': (3.025,96.170,68.869)
C1': (3.049,95.016,66.825)
O4': (4.023,96.048,66.771)
C5': (5.121,97.433,68.443)
P: (7.431,98.407,67.733)
O2: (1.780,92.597,66.762)
C4': (3.814,96.972,67.868)
C2': (2.113,95.328,67.997)
O2': (0.975,96.042,67.558)
N1: (3.755,93.728,66.943)
N3: (3.668,91.353,66.926)
N4: (5.596,90.140,67.099)
C6: (5.112,93.686,67.106)
C5: (5.765,92.521,67.170)
O3': (2.355,97.046,69.736)
OP1: (7.433,99.730,68.409)
OP2: (8.047,97.232,68.410)
C4: (4.995,91.328,67.064)
O5': (5.912,98.056,67.440)
C3': (3.025,96.170,68.869)
C1': (3.049,95.016,66.825)
O4': (4.023,96.048,66.771)
C5': (5.121,97.433,68.443)
P: (7.431,98.407,67.733)
O2: (1.780,92.597,66.762)
C4': (3.814,96.972,67.868)
C2': (2.113,95.328,67.997)
O2': (0.975,96.042,67.558)
N1: (3.755,93.728,66.943)
N3: (3.668,91.353,66.926)
N4: (5.596,90.140,67.099)
C6: (5.112,93.686,67.106)
C5: (5.765,92.521,67.170)
O3': (2.355,97.046,69.736)
Image (generated by PyMOL):