Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3NDB:M52:M53
Extra
PDB:
ATOM 1 O3' G A 51 -48.314 39.157 -55.115 1.00 97.94 O
ATOM 2 P U A 52 -48.538 38.256 -56.423 1.00100.73 P
ATOM 3 OP1 U A 52 -47.912 39.023 -57.522 1.00103.16 O
ATOM 4 OP2 U A 52 -49.957 37.855 -56.537 1.00100.90 O
ATOM 5 O5' U A 52 -47.736 36.883 -56.166 1.00 99.09 O
ATOM 6 C5' U A 52 -46.323 36.667 -56.343 1.00 97.15 C
ATOM 7 C4' U A 52 -46.011 35.285 -55.778 1.00 95.41 C
ATOM 8 O4' U A 52 -46.628 35.169 -54.461 1.00 94.51 O
ATOM 9 C3' U A 52 -46.613 34.131 -56.579 1.00 95.09 C
ATOM 10 O3' U A 52 -45.767 33.638 -57.593 1.00 91.78 O
ATOM 11 C2' U A 52 -46.846 33.046 -55.539 1.00 95.20 C
ATOM 12 O2' U A 52 -45.755 32.162 -55.354 1.00 95.98 O
ATOM 13 C1' U A 52 -47.153 33.859 -54.281 1.00 94.72 C
ATOM 14 N1 U A 52 -48.648 33.783 -54.047 1.00 95.39 N
ATOM 15 C2 U A 52 -49.130 32.631 -53.452 1.00 94.02 C
ATOM 16 O2 U A 52 -48.410 31.728 -53.094 1.00 93.91 O
ATOM 17 N3 U A 52 -50.479 32.557 -53.268 1.00 94.17 N
ATOM 18 C4 U A 52 -51.408 33.507 -53.619 1.00 96.26 C
ATOM 19 O4 U A 52 -52.599 33.295 -53.376 1.00 97.19 O
ATOM 20 C5 U A 52 -50.841 34.682 -54.249 1.00 97.48 C
ATOM 21 C6 U A 52 -49.514 34.784 -54.447 1.00 96.58 C
ATOM 22 P A A 53 -46.275 33.795 -59.095 1.00 90.99 P
ATOM 23 OP1 A A 53 -45.055 34.330 -59.754 1.00 91.54 O
ATOM 24 OP2 A A 53 -47.563 34.524 -59.072 1.00 90.79 O
ATOM 25 O5' A A 53 -46.630 32.344 -59.696 1.00 88.36 O
TER
ATOM 1 O3' U B 52 -45.767 33.638 -57.593 1.00 91.78 O
ATOM 2 P A B 53 -46.275 33.795 -59.095 1.00 90.99 P
ATOM 3 OP1 A B 53 -45.055 34.330 -59.754 1.00 91.54 O
ATOM 4 OP2 A B 53 -47.563 34.524 -59.072 1.00 90.79 O
ATOM 5 O5' A B 53 -46.630 32.344 -59.696 1.00 88.36 O
ATOM 6 C5' A B 53 -46.264 31.129 -59.085 1.00 81.66 C
ATOM 7 C4' A B 53 -44.999 30.570 -59.692 1.00 78.87 C
ATOM 8 O4' A B 53 -43.878 31.488 -59.624 1.00 76.87 O
ATOM 9 C3' A B 53 -44.593 29.345 -58.908 1.00 77.32 C
ATOM 10 O3' A B 53 -44.941 28.210 -59.644 1.00 78.58 O
ATOM 11 C2' A B 53 -43.089 29.439 -58.678 1.00 76.13 C
ATOM 12 O2' A B 53 -42.330 28.452 -59.343 1.00 77.65 O
ATOM 13 C1' A B 53 -42.709 30.822 -59.175 1.00 74.37 C
ATOM 14 N9 A B 53 -42.157 31.485 -58.018 1.00 72.82 N
ATOM 15 C8 A B 53 -42.762 32.411 -57.202 1.00 72.92 C
ATOM 16 N7 A B 53 -42.011 32.837 -56.209 1.00 70.91 N
ATOM 17 C5 A B 53 -40.845 32.121 -56.382 1.00 70.13 C
ATOM 18 C6 A B 53 -39.642 32.103 -55.662 1.00 69.02 C
ATOM 19 N6 A B 53 -39.456 32.854 -54.583 1.00 68.90 N
ATOM 20 N1 A B 53 -38.649 31.277 -56.086 1.00 69.55 N
ATOM 21 C2 A B 53 -38.856 30.497 -57.167 1.00 70.19 C
ATOM 22 N3 A B 53 -39.965 30.429 -57.928 1.00 72.12 N
ATOM 23 C4 A B 53 -40.921 31.270 -57.479 1.00 71.72 C
ATOM 24 P A B 54 -46.069 27.276 -59.016 1.00 79.87 P
ATOM 25 OP1 A B 54 -47.200 27.108 -59.947 1.00 78.02 O
ATOM 26 OP2 A B 54 -46.386 27.870 -57.690 1.00 79.71 O
ATOM 27 O5' A B 54 -45.281 25.866 -58.851 1.00 77.52 O
TER
ATOM 2 P U A 52 -48.538 38.256 -56.423 1.00100.73 P
ATOM 3 OP1 U A 52 -47.912 39.023 -57.522 1.00103.16 O
ATOM 4 OP2 U A 52 -49.957 37.855 -56.537 1.00100.90 O
ATOM 5 O5' U A 52 -47.736 36.883 -56.166 1.00 99.09 O
ATOM 6 C5' U A 52 -46.323 36.667 -56.343 1.00 97.15 C
ATOM 7 C4' U A 52 -46.011 35.285 -55.778 1.00 95.41 C
ATOM 8 O4' U A 52 -46.628 35.169 -54.461 1.00 94.51 O
ATOM 9 C3' U A 52 -46.613 34.131 -56.579 1.00 95.09 C
ATOM 10 O3' U A 52 -45.767 33.638 -57.593 1.00 91.78 O
ATOM 11 C2' U A 52 -46.846 33.046 -55.539 1.00 95.20 C
ATOM 12 O2' U A 52 -45.755 32.162 -55.354 1.00 95.98 O
ATOM 13 C1' U A 52 -47.153 33.859 -54.281 1.00 94.72 C
ATOM 14 N1 U A 52 -48.648 33.783 -54.047 1.00 95.39 N
ATOM 15 C2 U A 52 -49.130 32.631 -53.452 1.00 94.02 C
ATOM 16 O2 U A 52 -48.410 31.728 -53.094 1.00 93.91 O
ATOM 17 N3 U A 52 -50.479 32.557 -53.268 1.00 94.17 N
ATOM 18 C4 U A 52 -51.408 33.507 -53.619 1.00 96.26 C
ATOM 19 O4 U A 52 -52.599 33.295 -53.376 1.00 97.19 O
ATOM 20 C5 U A 52 -50.841 34.682 -54.249 1.00 97.48 C
ATOM 21 C6 U A 52 -49.514 34.784 -54.447 1.00 96.58 C
ATOM 22 P A A 53 -46.275 33.795 -59.095 1.00 90.99 P
ATOM 23 OP1 A A 53 -45.055 34.330 -59.754 1.00 91.54 O
ATOM 24 OP2 A A 53 -47.563 34.524 -59.072 1.00 90.79 O
ATOM 25 O5' A A 53 -46.630 32.344 -59.696 1.00 88.36 O
TER
ATOM 1 O3' U B 52 -45.767 33.638 -57.593 1.00 91.78 O
ATOM 2 P A B 53 -46.275 33.795 -59.095 1.00 90.99 P
ATOM 3 OP1 A B 53 -45.055 34.330 -59.754 1.00 91.54 O
ATOM 4 OP2 A B 53 -47.563 34.524 -59.072 1.00 90.79 O
ATOM 5 O5' A B 53 -46.630 32.344 -59.696 1.00 88.36 O
ATOM 6 C5' A B 53 -46.264 31.129 -59.085 1.00 81.66 C
ATOM 7 C4' A B 53 -44.999 30.570 -59.692 1.00 78.87 C
ATOM 8 O4' A B 53 -43.878 31.488 -59.624 1.00 76.87 O
ATOM 9 C3' A B 53 -44.593 29.345 -58.908 1.00 77.32 C
ATOM 10 O3' A B 53 -44.941 28.210 -59.644 1.00 78.58 O
ATOM 11 C2' A B 53 -43.089 29.439 -58.678 1.00 76.13 C
ATOM 12 O2' A B 53 -42.330 28.452 -59.343 1.00 77.65 O
ATOM 13 C1' A B 53 -42.709 30.822 -59.175 1.00 74.37 C
ATOM 14 N9 A B 53 -42.157 31.485 -58.018 1.00 72.82 N
ATOM 15 C8 A B 53 -42.762 32.411 -57.202 1.00 72.92 C
ATOM 16 N7 A B 53 -42.011 32.837 -56.209 1.00 70.91 N
ATOM 17 C5 A B 53 -40.845 32.121 -56.382 1.00 70.13 C
ATOM 18 C6 A B 53 -39.642 32.103 -55.662 1.00 69.02 C
ATOM 19 N6 A B 53 -39.456 32.854 -54.583 1.00 68.90 N
ATOM 20 N1 A B 53 -38.649 31.277 -56.086 1.00 69.55 N
ATOM 21 C2 A B 53 -38.856 30.497 -57.167 1.00 70.19 C
ATOM 22 N3 A B 53 -39.965 30.429 -57.928 1.00 72.12 N
ATOM 23 C4 A B 53 -40.921 31.270 -57.479 1.00 71.72 C
ATOM 24 P A B 54 -46.069 27.276 -59.016 1.00 79.87 P
ATOM 25 OP1 A B 54 -47.200 27.108 -59.947 1.00 78.02 O
ATOM 26 OP2 A B 54 -46.386 27.870 -57.690 1.00 79.71 O
ATOM 27 O5' A B 54 -45.281 25.866 -58.851 1.00 77.52 O
TER
Atoms:
C4: (-51.408,33.507,-53.619)
N3: (-50.479,32.557,-53.268)
OP1: (-47.912,39.023,-57.522)
OP2: (-49.957,37.855,-56.537)
C2: (-49.130,32.631,-53.452)
C1': (-47.153,33.859,-54.281)
C3': (-46.613,34.131,-56.579)
O5': (-47.736,36.883,-56.166)
O4': (-46.628,35.169,-54.461)
C5': (-46.323,36.667,-56.343)
P: (-48.538,38.256,-56.423)
C4': (-46.011,35.285,-55.778)
C2': (-46.846,33.046,-55.539)
O2': (-45.755,32.162,-55.354)
N1: (-48.648,33.783,-54.047)
O4: (-52.599,33.295,-53.376)
O2: (-48.410,31.728,-53.094)
C6: (-49.514,34.784,-54.447)
C5: (-50.841,34.682,-54.249)
O3': (-45.767,33.638,-57.593)
N3: (-50.479,32.557,-53.268)
OP1: (-47.912,39.023,-57.522)
OP2: (-49.957,37.855,-56.537)
C2: (-49.130,32.631,-53.452)
C1': (-47.153,33.859,-54.281)
C3': (-46.613,34.131,-56.579)
O5': (-47.736,36.883,-56.166)
O4': (-46.628,35.169,-54.461)
C5': (-46.323,36.667,-56.343)
P: (-48.538,38.256,-56.423)
C4': (-46.011,35.285,-55.778)
C2': (-46.846,33.046,-55.539)
O2': (-45.755,32.162,-55.354)
N1: (-48.648,33.783,-54.047)
O4: (-52.599,33.295,-53.376)
O2: (-48.410,31.728,-53.094)
C6: (-49.514,34.784,-54.447)
C5: (-50.841,34.682,-54.249)
O3': (-45.767,33.638,-57.593)
OP1: (-45.055,34.330,-59.754)
OP2: (-47.563,34.524,-59.072)
C3': (-44.593,29.345,-58.908)
C1': (-42.709,30.822,-59.175)
C5': (-46.264,31.129,-59.085)
O4': (-43.878,31.488,-59.624)
C8: (-42.762,32.411,-57.202)
O2': (-42.330,28.452,-59.343)
C6: (-39.642,32.103,-55.662)
C5: (-40.845,32.121,-56.382)
C4: (-40.921,31.270,-57.479)
P: (-46.275,33.795,-59.095)
C4': (-44.999,30.570,-59.692)
C2': (-43.089,29.439,-58.678)
C2: (-38.856,30.497,-57.167)
N1: (-38.649,31.277,-56.086)
N3: (-39.965,30.429,-57.928)
N6: (-39.456,32.854,-54.583)
N7: (-42.011,32.837,-56.209)
N9: (-42.157,31.485,-58.018)
O5': (-46.630,32.344,-59.696)
O3': (-44.941,28.210,-59.644)
OP2: (-47.563,34.524,-59.072)
C3': (-44.593,29.345,-58.908)
C1': (-42.709,30.822,-59.175)
C5': (-46.264,31.129,-59.085)
O4': (-43.878,31.488,-59.624)
C8: (-42.762,32.411,-57.202)
O2': (-42.330,28.452,-59.343)
C6: (-39.642,32.103,-55.662)
C5: (-40.845,32.121,-56.382)
C4: (-40.921,31.270,-57.479)
P: (-46.275,33.795,-59.095)
C4': (-44.999,30.570,-59.692)
C2': (-43.089,29.439,-58.678)
C2: (-38.856,30.497,-57.167)
N1: (-38.649,31.277,-56.086)
N3: (-39.965,30.429,-57.928)
N6: (-39.456,32.854,-54.583)
N7: (-42.011,32.837,-56.209)
N9: (-42.157,31.485,-58.018)
O5': (-46.630,32.344,-59.696)
O3': (-44.941,28.210,-59.644)
Image (generated by PyMOL):