Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3PDR:A54:A55
Extra
PDB:
ATOM 1 O3' C A 53 -5.392 40.814 5.019 1.00 25.85 O
ATOM 2 P C A 54 -6.779 40.008 5.202 1.00 26.71 P
ATOM 3 OP1 C A 54 -6.760 38.961 4.167 1.00 24.99 O
ATOM 4 OP2 C A 54 -7.934 40.933 5.288 1.00 24.07 O
ATOM 5 O5' C A 54 -6.565 39.374 6.651 1.00 23.54 O
ATOM 6 C5' C A 54 -5.518 38.450 6.909 1.00 22.17 C
ATOM 7 C4' C A 54 -5.561 38.015 8.352 1.00 24.34 C
ATOM 8 O4' C A 54 -5.254 39.148 9.219 1.00 22.74 O
ATOM 9 C3' C A 54 -6.931 37.548 8.821 1.00 21.12 C
ATOM 10 O3' C A 54 -7.180 36.204 8.461 1.00 22.76 O
ATOM 11 C2' C A 54 -6.857 37.788 10.322 1.00 24.10 C
ATOM 12 O2' C A 54 -6.124 36.750 10.943 1.00 23.08 O
ATOM 13 C1' C A 54 -6.024 39.072 10.392 1.00 22.23 C
ATOM 14 N1 C A 54 -6.883 40.263 10.518 1.00 23.54 N
ATOM 15 C2 C A 54 -7.077 40.753 11.807 1.00 24.98 C
ATOM 16 O2 C A 54 -6.488 40.151 12.713 1.00 26.34 O
ATOM 17 N3 C A 54 -7.887 41.822 12.007 1.00 26.34 N
ATOM 18 C4 C A 54 -8.487 42.397 10.951 1.00 27.74 C
ATOM 19 N4 C A 54 -9.271 43.458 11.149 1.00 32.59 N
ATOM 20 C5 C A 54 -8.304 41.917 9.624 1.00 25.31 C
ATOM 21 C6 C A 54 -7.510 40.851 9.452 1.00 24.04 C
ATOM 22 P A A 55 -8.636 35.660 8.014 1.00 25.36 P
ATOM 23 OP1 A A 55 -8.366 34.394 7.306 1.00 25.50 O
ATOM 24 OP2 A A 55 -9.384 36.739 7.335 1.00 25.57 O
ATOM 25 O5' A A 55 -9.319 35.372 9.421 1.00 24.76 O
TER
ATOM 1 O3' C B 54 -7.180 36.204 8.461 1.00 22.76 O
ATOM 2 P A B 55 -8.636 35.660 8.014 1.00 25.36 P
ATOM 3 OP1 A B 55 -8.366 34.394 7.306 1.00 25.50 O
ATOM 4 OP2 A B 55 -9.384 36.739 7.335 1.00 25.57 O
ATOM 5 O5' A B 55 -9.319 35.372 9.421 1.00 24.76 O
ATOM 6 C5' A B 55 -10.616 34.800 9.446 1.00 26.24 C
ATOM 7 C4' A B 55 -10.868 34.129 10.766 1.00 23.77 C
ATOM 8 O4' A B 55 -10.131 32.882 10.827 1.00 20.86 O
ATOM 9 C3' A B 55 -10.411 34.927 11.978 1.00 23.46 C
ATOM 10 O3' A B 55 -11.386 35.876 12.379 1.00 24.95 O
ATOM 11 C2' A B 55 -10.217 33.826 13.003 1.00 22.75 C
ATOM 12 O2' A B 55 -11.498 33.423 13.465 1.00 24.32 O
ATOM 13 C1' A B 55 -9.648 32.696 12.143 1.00 22.83 C
ATOM 14 N9 A B 55 -8.168 32.683 12.092 1.00 24.26 N
ATOM 15 C8 A B 55 -7.347 33.112 11.072 1.00 22.41 C
ATOM 16 N7 A B 55 -6.056 32.926 11.300 1.00 19.91 N
ATOM 17 C5 A B 55 -6.040 32.324 12.560 1.00 22.15 C
ATOM 18 C6 A B 55 -4.988 31.883 13.395 1.00 19.59 C
ATOM 19 N6 A B 55 -3.688 31.949 13.080 1.00 19.48 N
ATOM 20 N1 A B 55 -5.316 31.319 14.571 1.00 17.67 N
ATOM 21 C2 A B 55 -6.610 31.227 14.912 1.00 21.73 C
ATOM 22 N3 A B 55 -7.690 31.625 14.229 1.00 22.21 N
ATOM 23 C4 A B 55 -7.329 32.171 13.051 1.00 19.99 C
ATOM 24 P A B 56 -11.114 37.361 12.932 1.00 26.63 P
ATOM 25 OP1 A B 56 -12.438 38.022 12.992 1.00 28.97 O
ATOM 26 OP2 A B 56 -10.077 38.018 12.104 1.00 23.26 O
ATOM 27 O5' A B 56 -10.574 37.103 14.402 1.00 26.30 O
TER
ATOM 2 P C A 54 -6.779 40.008 5.202 1.00 26.71 P
ATOM 3 OP1 C A 54 -6.760 38.961 4.167 1.00 24.99 O
ATOM 4 OP2 C A 54 -7.934 40.933 5.288 1.00 24.07 O
ATOM 5 O5' C A 54 -6.565 39.374 6.651 1.00 23.54 O
ATOM 6 C5' C A 54 -5.518 38.450 6.909 1.00 22.17 C
ATOM 7 C4' C A 54 -5.561 38.015 8.352 1.00 24.34 C
ATOM 8 O4' C A 54 -5.254 39.148 9.219 1.00 22.74 O
ATOM 9 C3' C A 54 -6.931 37.548 8.821 1.00 21.12 C
ATOM 10 O3' C A 54 -7.180 36.204 8.461 1.00 22.76 O
ATOM 11 C2' C A 54 -6.857 37.788 10.322 1.00 24.10 C
ATOM 12 O2' C A 54 -6.124 36.750 10.943 1.00 23.08 O
ATOM 13 C1' C A 54 -6.024 39.072 10.392 1.00 22.23 C
ATOM 14 N1 C A 54 -6.883 40.263 10.518 1.00 23.54 N
ATOM 15 C2 C A 54 -7.077 40.753 11.807 1.00 24.98 C
ATOM 16 O2 C A 54 -6.488 40.151 12.713 1.00 26.34 O
ATOM 17 N3 C A 54 -7.887 41.822 12.007 1.00 26.34 N
ATOM 18 C4 C A 54 -8.487 42.397 10.951 1.00 27.74 C
ATOM 19 N4 C A 54 -9.271 43.458 11.149 1.00 32.59 N
ATOM 20 C5 C A 54 -8.304 41.917 9.624 1.00 25.31 C
ATOM 21 C6 C A 54 -7.510 40.851 9.452 1.00 24.04 C
ATOM 22 P A A 55 -8.636 35.660 8.014 1.00 25.36 P
ATOM 23 OP1 A A 55 -8.366 34.394 7.306 1.00 25.50 O
ATOM 24 OP2 A A 55 -9.384 36.739 7.335 1.00 25.57 O
ATOM 25 O5' A A 55 -9.319 35.372 9.421 1.00 24.76 O
TER
ATOM 1 O3' C B 54 -7.180 36.204 8.461 1.00 22.76 O
ATOM 2 P A B 55 -8.636 35.660 8.014 1.00 25.36 P
ATOM 3 OP1 A B 55 -8.366 34.394 7.306 1.00 25.50 O
ATOM 4 OP2 A B 55 -9.384 36.739 7.335 1.00 25.57 O
ATOM 5 O5' A B 55 -9.319 35.372 9.421 1.00 24.76 O
ATOM 6 C5' A B 55 -10.616 34.800 9.446 1.00 26.24 C
ATOM 7 C4' A B 55 -10.868 34.129 10.766 1.00 23.77 C
ATOM 8 O4' A B 55 -10.131 32.882 10.827 1.00 20.86 O
ATOM 9 C3' A B 55 -10.411 34.927 11.978 1.00 23.46 C
ATOM 10 O3' A B 55 -11.386 35.876 12.379 1.00 24.95 O
ATOM 11 C2' A B 55 -10.217 33.826 13.003 1.00 22.75 C
ATOM 12 O2' A B 55 -11.498 33.423 13.465 1.00 24.32 O
ATOM 13 C1' A B 55 -9.648 32.696 12.143 1.00 22.83 C
ATOM 14 N9 A B 55 -8.168 32.683 12.092 1.00 24.26 N
ATOM 15 C8 A B 55 -7.347 33.112 11.072 1.00 22.41 C
ATOM 16 N7 A B 55 -6.056 32.926 11.300 1.00 19.91 N
ATOM 17 C5 A B 55 -6.040 32.324 12.560 1.00 22.15 C
ATOM 18 C6 A B 55 -4.988 31.883 13.395 1.00 19.59 C
ATOM 19 N6 A B 55 -3.688 31.949 13.080 1.00 19.48 N
ATOM 20 N1 A B 55 -5.316 31.319 14.571 1.00 17.67 N
ATOM 21 C2 A B 55 -6.610 31.227 14.912 1.00 21.73 C
ATOM 22 N3 A B 55 -7.690 31.625 14.229 1.00 22.21 N
ATOM 23 C4 A B 55 -7.329 32.171 13.051 1.00 19.99 C
ATOM 24 P A B 56 -11.114 37.361 12.932 1.00 26.63 P
ATOM 25 OP1 A B 56 -12.438 38.022 12.992 1.00 28.97 O
ATOM 26 OP2 A B 56 -10.077 38.018 12.104 1.00 23.26 O
ATOM 27 O5' A B 56 -10.574 37.103 14.402 1.00 26.30 O
TER
Atoms:
C2: (-7.077,40.753,11.807)
OP1: (-6.760,38.961,4.167)
OP2: (-7.934,40.933,5.288)
C4: (-8.487,42.397,10.951)
O5': (-6.565,39.374,6.651)
C3': (-6.931,37.548,8.821)
C1': (-6.024,39.072,10.392)
O4': (-5.254,39.148,9.219)
C5': (-5.518,38.450,6.909)
P: (-6.779,40.008,5.202)
O2: (-6.488,40.151,12.713)
C4': (-5.561,38.015,8.352)
C2': (-6.857,37.788,10.322)
O2': (-6.124,36.750,10.943)
N1: (-6.883,40.263,10.518)
N3: (-7.887,41.822,12.007)
N4: (-9.271,43.458,11.149)
C6: (-7.510,40.851,9.452)
C5: (-8.304,41.917,9.624)
O3': (-7.180,36.204,8.461)
OP1: (-6.760,38.961,4.167)
OP2: (-7.934,40.933,5.288)
C4: (-8.487,42.397,10.951)
O5': (-6.565,39.374,6.651)
C3': (-6.931,37.548,8.821)
C1': (-6.024,39.072,10.392)
O4': (-5.254,39.148,9.219)
C5': (-5.518,38.450,6.909)
P: (-6.779,40.008,5.202)
O2: (-6.488,40.151,12.713)
C4': (-5.561,38.015,8.352)
C2': (-6.857,37.788,10.322)
O2': (-6.124,36.750,10.943)
N1: (-6.883,40.263,10.518)
N3: (-7.887,41.822,12.007)
N4: (-9.271,43.458,11.149)
C6: (-7.510,40.851,9.452)
C5: (-8.304,41.917,9.624)
O3': (-7.180,36.204,8.461)
OP1: (-8.366,34.394,7.306)
OP2: (-9.384,36.739,7.335)
C3': (-10.411,34.927,11.978)
C1': (-9.648,32.696,12.143)
C5': (-10.616,34.800,9.446)
O4': (-10.131,32.882,10.827)
C8: (-7.347,33.112,11.072)
O2': (-11.498,33.423,13.465)
C6: (-4.988,31.883,13.395)
C5: (-6.040,32.324,12.560)
C4: (-7.329,32.171,13.051)
P: (-8.636,35.660,8.014)
C4': (-10.868,34.129,10.766)
C2': (-10.217,33.826,13.003)
C2: (-6.610,31.227,14.912)
N1: (-5.316,31.319,14.571)
N3: (-7.690,31.625,14.229)
N6: (-3.688,31.949,13.080)
N7: (-6.056,32.926,11.300)
N9: (-8.168,32.683,12.092)
O5': (-9.319,35.372,9.421)
O3': (-11.386,35.876,12.379)
OP2: (-9.384,36.739,7.335)
C3': (-10.411,34.927,11.978)
C1': (-9.648,32.696,12.143)
C5': (-10.616,34.800,9.446)
O4': (-10.131,32.882,10.827)
C8: (-7.347,33.112,11.072)
O2': (-11.498,33.423,13.465)
C6: (-4.988,31.883,13.395)
C5: (-6.040,32.324,12.560)
C4: (-7.329,32.171,13.051)
P: (-8.636,35.660,8.014)
C4': (-10.868,34.129,10.766)
C2': (-10.217,33.826,13.003)
C2: (-6.610,31.227,14.912)
N1: (-5.316,31.319,14.571)
N3: (-7.690,31.625,14.229)
N6: (-3.688,31.949,13.080)
N7: (-6.056,32.926,11.300)
N9: (-8.168,32.683,12.092)
O5': (-9.319,35.372,9.421)
O3': (-11.386,35.876,12.379)
Image (generated by PyMOL):