Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0551:0582
Extra
PDB:
ATOM 1 O3' A A 550 -15.827 99.626 95.758 1.00 56.14 O
ATOM 2 P C A 551 -14.993 98.496 96.529 1.00 57.00 P
ATOM 3 OP1 C A 551 -15.688 97.195 96.344 1.00 58.09 O
ATOM 4 OP2 C A 551 -14.714 98.997 97.897 1.00 54.86 O
ATOM 5 O5' C A 551 -13.628 98.414 95.719 1.00 58.18 O
ATOM 6 C5' C A 551 -13.623 98.056 94.329 1.00 57.26 C
ATOM 7 C4' C A 551 -12.256 98.293 93.737 1.00 57.74 C
ATOM 8 O4' C A 551 -11.936 99.707 93.787 1.00 56.72 O
ATOM 9 C3' C A 551 -11.096 97.633 94.462 1.00 57.18 C
ATOM 10 O3' C A 551 -10.975 96.264 94.079 1.00 56.79 O
ATOM 11 C2' C A 551 -9.913 98.468 93.986 1.00 56.99 C
ATOM 12 O2' C A 551 -9.488 98.103 92.688 1.00 57.97 O
ATOM 13 C1' C A 551 -10.534 99.866 93.917 1.00 56.54 C
ATOM 14 N1 C A 551 -10.255 100.727 95.080 1.00 57.52 N
ATOM 15 C2 C A 551 -9.093 101.511 95.072 1.00 57.56 C
ATOM 16 O2 C A 551 -8.335 101.456 94.088 1.00 58.59 O
ATOM 17 N3 C A 551 -8.826 102.309 96.134 1.00 56.59 N
ATOM 18 C4 C A 551 -9.662 102.338 97.172 1.00 56.64 C
ATOM 19 N4 C A 551 -9.355 103.130 98.202 1.00 56.29 N
ATOM 20 C5 C A 551 -10.851 101.555 97.205 1.00 56.86 C
ATOM 21 C6 C A 551 -11.106 100.770 96.150 1.00 57.47 C
ATOM 22 P G A 552 -10.773 95.135 95.203 1.00 57.63 P
ATOM 23 OP1 G A 552 -10.735 93.817 94.517 1.00 56.25 O
ATOM 24 OP2 G A 552 -11.752 95.368 96.293 1.00 58.79 O
ATOM 25 O5' G A 552 -9.329 95.444 95.803 1.00 59.62 O
TER
ATOM 1 O3' A B 581 0.415 107.088 97.446 1.00 49.01 O
ATOM 2 P C B 582 -0.694 108.061 96.813 1.00 47.27 P
ATOM 3 OP1 C B 582 -0.141 109.437 96.748 1.00 46.17 O
ATOM 4 OP2 C B 582 -1.959 107.828 97.540 1.00 50.14 O
ATOM 5 O5' C B 582 -0.865 107.504 95.331 1.00 45.49 O
ATOM 6 C5' C B 582 0.270 107.368 94.471 1.00 43.17 C
ATOM 7 C4' C B 582 -0.042 106.444 93.316 1.00 44.44 C
ATOM 8 O4' C B 582 -0.380 105.123 93.813 1.00 45.51 O
ATOM 9 C3' C B 582 -1.225 106.812 92.439 1.00 42.71 C
ATOM 10 O3' C B 582 -0.901 107.823 91.499 1.00 40.67 O
ATOM 11 C2' C B 582 -1.538 105.483 91.771 1.00 44.43 C
ATOM 12 O2' C B 582 -0.643 105.167 90.725 1.00 41.80 O
ATOM 13 C1' C B 582 -1.316 104.513 92.934 1.00 46.95 C
ATOM 14 N1 C B 582 -2.562 104.236 93.683 1.00 51.08 N
ATOM 15 C2 C B 582 -3.445 103.245 93.198 1.00 52.59 C
ATOM 16 O2 C B 582 -3.135 102.594 92.181 1.00 50.98 O
ATOM 17 N3 C B 582 -4.610 103.025 93.857 1.00 53.55 N
ATOM 18 C4 C B 582 -4.902 103.731 94.953 1.00 53.11 C
ATOM 19 N4 C B 582 -6.074 103.502 95.549 1.00 54.21 N
ATOM 20 C5 C B 582 -4.011 104.713 95.482 1.00 51.35 C
ATOM 21 C6 C B 582 -2.869 104.934 94.822 1.00 50.33 C
ATOM 22 P U B 583 -2.007 108.916 91.099 1.00 40.82 P
ATOM 23 OP1 U B 583 -1.430 109.784 90.038 1.00 40.53 O
ATOM 24 OP2 U B 583 -2.519 109.538 92.346 1.00 36.82 O
ATOM 25 O5' U B 583 -3.156 108.037 90.435 1.00 39.87 O
TER
ATOM 2 P C A 551 -14.993 98.496 96.529 1.00 57.00 P
ATOM 3 OP1 C A 551 -15.688 97.195 96.344 1.00 58.09 O
ATOM 4 OP2 C A 551 -14.714 98.997 97.897 1.00 54.86 O
ATOM 5 O5' C A 551 -13.628 98.414 95.719 1.00 58.18 O
ATOM 6 C5' C A 551 -13.623 98.056 94.329 1.00 57.26 C
ATOM 7 C4' C A 551 -12.256 98.293 93.737 1.00 57.74 C
ATOM 8 O4' C A 551 -11.936 99.707 93.787 1.00 56.72 O
ATOM 9 C3' C A 551 -11.096 97.633 94.462 1.00 57.18 C
ATOM 10 O3' C A 551 -10.975 96.264 94.079 1.00 56.79 O
ATOM 11 C2' C A 551 -9.913 98.468 93.986 1.00 56.99 C
ATOM 12 O2' C A 551 -9.488 98.103 92.688 1.00 57.97 O
ATOM 13 C1' C A 551 -10.534 99.866 93.917 1.00 56.54 C
ATOM 14 N1 C A 551 -10.255 100.727 95.080 1.00 57.52 N
ATOM 15 C2 C A 551 -9.093 101.511 95.072 1.00 57.56 C
ATOM 16 O2 C A 551 -8.335 101.456 94.088 1.00 58.59 O
ATOM 17 N3 C A 551 -8.826 102.309 96.134 1.00 56.59 N
ATOM 18 C4 C A 551 -9.662 102.338 97.172 1.00 56.64 C
ATOM 19 N4 C A 551 -9.355 103.130 98.202 1.00 56.29 N
ATOM 20 C5 C A 551 -10.851 101.555 97.205 1.00 56.86 C
ATOM 21 C6 C A 551 -11.106 100.770 96.150 1.00 57.47 C
ATOM 22 P G A 552 -10.773 95.135 95.203 1.00 57.63 P
ATOM 23 OP1 G A 552 -10.735 93.817 94.517 1.00 56.25 O
ATOM 24 OP2 G A 552 -11.752 95.368 96.293 1.00 58.79 O
ATOM 25 O5' G A 552 -9.329 95.444 95.803 1.00 59.62 O
TER
ATOM 1 O3' A B 581 0.415 107.088 97.446 1.00 49.01 O
ATOM 2 P C B 582 -0.694 108.061 96.813 1.00 47.27 P
ATOM 3 OP1 C B 582 -0.141 109.437 96.748 1.00 46.17 O
ATOM 4 OP2 C B 582 -1.959 107.828 97.540 1.00 50.14 O
ATOM 5 O5' C B 582 -0.865 107.504 95.331 1.00 45.49 O
ATOM 6 C5' C B 582 0.270 107.368 94.471 1.00 43.17 C
ATOM 7 C4' C B 582 -0.042 106.444 93.316 1.00 44.44 C
ATOM 8 O4' C B 582 -0.380 105.123 93.813 1.00 45.51 O
ATOM 9 C3' C B 582 -1.225 106.812 92.439 1.00 42.71 C
ATOM 10 O3' C B 582 -0.901 107.823 91.499 1.00 40.67 O
ATOM 11 C2' C B 582 -1.538 105.483 91.771 1.00 44.43 C
ATOM 12 O2' C B 582 -0.643 105.167 90.725 1.00 41.80 O
ATOM 13 C1' C B 582 -1.316 104.513 92.934 1.00 46.95 C
ATOM 14 N1 C B 582 -2.562 104.236 93.683 1.00 51.08 N
ATOM 15 C2 C B 582 -3.445 103.245 93.198 1.00 52.59 C
ATOM 16 O2 C B 582 -3.135 102.594 92.181 1.00 50.98 O
ATOM 17 N3 C B 582 -4.610 103.025 93.857 1.00 53.55 N
ATOM 18 C4 C B 582 -4.902 103.731 94.953 1.00 53.11 C
ATOM 19 N4 C B 582 -6.074 103.502 95.549 1.00 54.21 N
ATOM 20 C5 C B 582 -4.011 104.713 95.482 1.00 51.35 C
ATOM 21 C6 C B 582 -2.869 104.934 94.822 1.00 50.33 C
ATOM 22 P U B 583 -2.007 108.916 91.099 1.00 40.82 P
ATOM 23 OP1 U B 583 -1.430 109.784 90.038 1.00 40.53 O
ATOM 24 OP2 U B 583 -2.519 109.538 92.346 1.00 36.82 O
ATOM 25 O5' U B 583 -3.156 108.037 90.435 1.00 39.87 O
TER
Atoms:
C2: (-9.093,101.511,95.072)
OP1: (-15.688,97.195,96.344)
OP2: (-14.714,98.997,97.897)
C4: (-9.662,102.338,97.172)
O5': (-13.628,98.414,95.719)
C3': (-11.096,97.633,94.462)
C1': (-10.534,99.866,93.917)
O4': (-11.936,99.707,93.787)
C5': (-13.623,98.056,94.329)
P: (-14.993,98.496,96.529)
O2: (-8.335,101.456,94.088)
C4': (-12.256,98.293,93.737)
C2': (-9.913,98.468,93.986)
O2': (-9.488,98.103,92.688)
N1: (-10.255,100.727,95.080)
N3: (-8.826,102.309,96.134)
N4: (-9.355,103.130,98.202)
C6: (-11.106,100.770,96.150)
C5: (-10.851,101.555,97.205)
O3': (-10.975,96.264,94.079)
OP1: (-15.688,97.195,96.344)
OP2: (-14.714,98.997,97.897)
C4: (-9.662,102.338,97.172)
O5': (-13.628,98.414,95.719)
C3': (-11.096,97.633,94.462)
C1': (-10.534,99.866,93.917)
O4': (-11.936,99.707,93.787)
C5': (-13.623,98.056,94.329)
P: (-14.993,98.496,96.529)
O2: (-8.335,101.456,94.088)
C4': (-12.256,98.293,93.737)
C2': (-9.913,98.468,93.986)
O2': (-9.488,98.103,92.688)
N1: (-10.255,100.727,95.080)
N3: (-8.826,102.309,96.134)
N4: (-9.355,103.130,98.202)
C6: (-11.106,100.770,96.150)
C5: (-10.851,101.555,97.205)
O3': (-10.975,96.264,94.079)
C2: (-3.445,103.245,93.198)
OP1: (-0.141,109.437,96.748)
OP2: (-1.959,107.828,97.540)
C4: (-4.902,103.731,94.953)
O5': (-0.865,107.504,95.331)
C3': (-1.225,106.812,92.439)
C1': (-1.316,104.513,92.934)
O4': (-0.380,105.123,93.813)
C5': (0.270,107.368,94.471)
P: (-0.694,108.061,96.813)
O2: (-3.135,102.594,92.181)
C4': (-0.042,106.444,93.316)
C2': (-1.538,105.483,91.771)
O2': (-0.643,105.167,90.725)
N1: (-2.562,104.236,93.683)
N3: (-4.610,103.025,93.857)
N4: (-6.074,103.502,95.549)
C6: (-2.869,104.934,94.822)
C5: (-4.011,104.713,95.482)
O3': (-0.901,107.823,91.499)
OP1: (-0.141,109.437,96.748)
OP2: (-1.959,107.828,97.540)
C4: (-4.902,103.731,94.953)
O5': (-0.865,107.504,95.331)
C3': (-1.225,106.812,92.439)
C1': (-1.316,104.513,92.934)
O4': (-0.380,105.123,93.813)
C5': (0.270,107.368,94.471)
P: (-0.694,108.061,96.813)
O2: (-3.135,102.594,92.181)
C4': (-0.042,106.444,93.316)
C2': (-1.538,105.483,91.771)
O2': (-0.643,105.167,90.725)
N1: (-2.562,104.236,93.683)
N3: (-4.610,103.025,93.857)
N4: (-6.074,103.502,95.549)
C6: (-2.869,104.934,94.822)
C5: (-4.011,104.713,95.482)
O3': (-0.901,107.823,91.499)
Image (generated by PyMOL):