ClaRNA

Doublet info:

Details

Nucleotide types: AA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3MUM:R10:R39

Extra

PDB:
ATOM 1 O3' C A 9 -4.123 1.325 28.423 1.00 45.77 O
ATOM 2 P A A 10 -2.708 1.057 27.750 1.00 46.77 P
ATOM 3 OP1 A A 10 -1.659 1.345 28.759 1.00 46.91 O
ATOM 4 OP2 A A 10 -2.695 1.796 26.462 1.00 46.41 O
ATOM 5 O5' A A 10 -2.774 -0.518 27.435 1.00 42.20 O
ATOM 6 C5' A A 10 -2.636 -1.478 28.463 1.00 41.60 C
ATOM 7 C4' A A 10 -2.818 -2.876 27.918 1.00 43.06 C
ATOM 8 O4' A A 10 -4.181 -3.029 27.452 1.00 45.94 O
ATOM 9 C3' A A 10 -1.984 -3.195 26.692 1.00 44.17 C
ATOM 10 O3' A A 10 -0.690 -3.622 27.032 1.00 45.17 O
ATOM 11 C2' A A 10 -2.792 -4.299 26.025 1.00 45.23 C
ATOM 12 O2' A A 10 -2.609 -5.565 26.623 1.00 45.15 O
ATOM 13 C1' A A 10 -4.205 -3.784 26.246 1.00 46.39 C
ATOM 14 N9 A A 10 -4.681 -2.940 25.142 1.00 47.83 N
ATOM 15 C8 A A 10 -4.596 -1.577 25.038 1.00 47.21 C
ATOM 16 N7 A A 10 -5.109 -1.087 23.937 1.00 47.85 N
ATOM 17 C5 A A 10 -5.563 -2.208 23.262 1.00 48.73 C
ATOM 18 C6 A A 10 -6.214 -2.377 22.017 1.00 48.79 C
ATOM 19 N6 A A 10 -6.527 -1.361 21.206 1.00 48.52 N
ATOM 20 N1 A A 10 -6.532 -3.634 21.630 1.00 48.57 N
ATOM 21 C2 A A 10 -6.220 -4.654 22.440 1.00 49.97 C
ATOM 22 N3 A A 10 -5.607 -4.619 23.627 1.00 50.46 N
ATOM 23 C4 A A 10 -5.304 -3.358 23.987 1.00 48.46 C
ATOM 24 P G A 11 0.495 -3.277 26.016 1.00 47.82 P
ATOM 25 OP1 G A 11 1.771 -3.410 26.751 1.00 51.70 O
ATOM 26 OP2 G A 11 0.178 -1.994 25.344 1.00 45.54 O
ATOM 27 O5' G A 11 0.400 -4.461 24.944 1.00 46.46 O
TER

ATOM 1 O3' C B 38 -9.426 3.697 9.016 1.00 19.45 O
ATOM 2 P A B 39 -10.436 4.396 10.049 1.00 23.19 P
ATOM 3 OP1 A B 39 -11.408 5.186 9.248 1.00 19.76 O
ATOM 4 OP2 A B 39 -9.656 5.053 11.127 1.00 20.20 O
ATOM 5 O5' A B 39 -11.229 3.147 10.671 1.00 21.59 O
ATOM 6 C5' A B 39 -10.599 2.256 11.577 1.00 22.13 C
ATOM 7 C4' A B 39 -11.484 1.055 11.906 1.00 23.02 C
ATOM 8 O4' A B 39 -10.744 0.128 12.742 1.00 23.10 O
ATOM 9 C3' A B 39 -12.745 1.309 12.717 1.00 23.06 C
ATOM 10 O3' A B 39 -13.598 0.165 12.632 1.00 25.26 O
ATOM 11 C2' A B 39 -12.137 1.400 14.114 1.00 23.31 C
ATOM 12 O2' A B 39 -13.106 1.320 15.143 1.00 24.76 O
ATOM 13 C1' A B 39 -11.246 0.161 14.068 1.00 21.71 C
ATOM 14 N9 A B 39 -10.073 0.110 14.932 1.00 19.75 N
ATOM 15 C8 A B 39 -9.449 1.126 15.600 1.00 22.50 C
ATOM 16 N7 A B 39 -8.388 0.741 16.284 1.00 22.08 N
ATOM 17 C5 A B 39 -8.312 -0.618 16.035 1.00 17.54 C
ATOM 18 C6 A B 39 -7.414 -1.615 16.460 1.00 17.60 C
ATOM 19 N6 A B 39 -6.376 -1.381 17.266 1.00 20.37 N
ATOM 20 N1 A B 39 -7.625 -2.876 16.030 1.00 18.29 N
ATOM 21 C2 A B 39 -8.664 -3.116 15.218 1.00 17.84 C
ATOM 22 N3 A B 39 -9.571 -2.260 14.749 1.00 16.33 N
ATOM 23 C4 A B 39 -9.336 -1.018 15.199 1.00 16.97 C
ATOM 24 P A B 40 -14.698 -0.058 11.490 1.00 27.88 P
ATOM 25 OP1 A B 40 -14.364 0.786 10.321 1.00 29.31 O
ATOM 26 OP2 A B 40 -16.032 0.039 12.109 1.00 29.96 O
ATOM 27 O5' A B 40 -14.510 -1.601 11.144 1.00 26.45 O
TER

Atoms:
OP1: (-1.659,1.345,28.759)
OP2: (-2.695,1.796,26.462)
C3': (-1.984,-3.195,26.692)
C1': (-4.205,-3.784,26.246)
C5': (-2.636,-1.478,28.463)
O4': (-4.181,-3.029,27.452)
C8: (-4.596,-1.577,25.038)
O2': (-2.609,-5.565,26.623)
C6: (-6.214,-2.377,22.017)
C5: (-5.563,-2.208,23.262)
C4: (-5.304,-3.358,23.987)
P: (-2.708,1.057,27.750)
C4': (-2.818,-2.876,27.918)
C2': (-2.792,-4.299,26.025)
C2: (-6.220,-4.654,22.440)
N1: (-6.532,-3.634,21.630)
N3: (-5.607,-4.619,23.627)
N6: (-6.527,-1.361,21.206)
N7: (-5.109,-1.087,23.937)
N9: (-4.681,-2.940,25.142)
O5': (-2.774,-0.518,27.435)
O3': (-0.690,-3.622,27.032)
OP1: (-11.408,5.186,9.248)
OP2: (-9.656,5.053,11.127)
C3': (-12.745,1.309,12.717)
C1': (-11.246,0.161,14.068)
C5': (-10.599,2.256,11.577)
O4': (-10.744,0.128,12.742)
C8: (-9.449,1.126,15.600)
O2': (-13.106,1.320,15.143)
C6: (-7.414,-1.615,16.460)
C5: (-8.312,-0.618,16.035)
C4: (-9.336,-1.018,15.199)
P: (-10.436,4.396,10.049)
C4': (-11.484,1.055,11.906)
C2': (-12.137,1.400,14.114)
C2: (-8.664,-3.116,15.218)
N1: (-7.625,-2.876,16.030)
N3: (-9.571,-2.260,14.749)
N6: (-6.376,-1.381,17.266)
N7: (-8.388,0.741,16.284)
N9: (-10.073,0.110,14.932)
O5': (-11.229,3.147,10.671)
O3': (-13.598,0.165,12.632)
Image (generated by PyMOL):
PyMOL image
show in jmol