Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2GDI:X14:X59
Extra
PDB:
ATOM 1 O3' C A 13 -6.892 -16.349 16.585 1.00 36.97 O
ATOM 2 P C A 14 -7.068 -17.332 17.831 1.00 38.71 P
ATOM 3 OP1 C A 14 -8.078 -18.355 17.475 1.00 38.24 O
ATOM 4 OP2 C A 14 -7.239 -16.507 19.048 1.00 39.10 O
ATOM 5 O5' C A 14 -5.613 -18.001 17.882 1.00 40.02 O
ATOM 6 C5' C A 14 -5.405 -19.299 18.423 1.00 40.17 C
ATOM 7 C4' C A 14 -4.189 -19.945 17.780 1.00 40.55 C
ATOM 8 O4' C A 14 -4.488 -20.247 16.395 1.00 40.45 O
ATOM 9 C3' C A 14 -2.945 -19.070 17.681 1.00 40.93 C
ATOM 10 O3' C A 14 -2.234 -19.029 18.918 1.00 41.11 O
ATOM 11 C2' C A 14 -2.165 -19.799 16.590 1.00 40.71 C
ATOM 12 O2' C A 14 -1.451 -20.917 17.080 1.00 41.80 O
ATOM 13 C1' C A 14 -3.279 -20.276 15.659 1.00 39.91 C
ATOM 14 N1 C A 14 -3.410 -19.452 14.419 1.00 39.23 N
ATOM 15 C2 C A 14 -3.006 -19.993 13.192 1.00 39.30 C
ATOM 16 O2 C A 14 -2.561 -21.147 13.154 1.00 39.92 O
ATOM 17 N3 C A 14 -3.115 -19.235 12.074 1.00 38.80 N
ATOM 18 C4 C A 14 -3.596 -17.993 12.151 1.00 38.19 C
ATOM 19 N4 C A 14 -3.683 -17.290 11.019 1.00 37.93 N
ATOM 20 C5 C A 14 -4.002 -17.420 13.392 1.00 38.44 C
ATOM 21 C6 C A 14 -3.891 -18.177 14.490 1.00 38.98 C
ATOM 22 P U A 15 -1.571 -17.661 19.429 1.00 41.67 P
ATOM 23 OP1 U A 15 -0.975 -17.919 20.759 1.00 41.62 O
ATOM 24 OP2 U A 15 -2.565 -16.574 19.282 1.00 41.71 O
ATOM 25 O5' U A 15 -0.401 -17.404 18.364 1.00 40.67 O
TER
ATOM 1 O3' U B 58 -8.785 -25.780 11.713 1.00 34.18 O
ATOM 2 P A B 59 -8.067 -26.205 13.078 1.00 34.53 P
ATOM 3 OP1 A B 59 -6.663 -26.569 12.780 1.00 34.89 O
ATOM 4 OP2 A B 59 -8.948 -27.173 13.771 1.00 34.83 O
ATOM 5 O5' A B 59 -8.085 -24.839 13.907 1.00 32.41 O
ATOM 6 C5' A B 59 -7.909 -24.841 15.315 1.00 30.38 C
ATOM 7 C4' A B 59 -7.954 -23.416 15.831 1.00 29.24 C
ATOM 8 O4' A B 59 -6.813 -22.692 15.311 1.00 28.36 O
ATOM 9 C3' A B 59 -9.165 -22.624 15.365 1.00 28.80 C
ATOM 10 O3' A B 59 -10.224 -22.796 16.294 1.00 29.62 O
ATOM 11 C2' A B 59 -8.652 -21.185 15.360 1.00 28.21 C
ATOM 12 O2' A B 59 -8.708 -20.589 16.641 1.00 27.47 O
ATOM 13 C1' A B 59 -7.193 -21.371 14.967 1.00 27.79 C
ATOM 14 N9 A B 59 -6.867 -21.132 13.563 1.00 27.32 N
ATOM 15 C8 A B 59 -6.420 -22.067 12.670 1.00 27.80 C
ATOM 16 N7 A B 59 -6.164 -21.585 11.479 1.00 27.63 N
ATOM 17 C5 A B 59 -6.448 -20.234 11.600 1.00 26.98 C
ATOM 18 C6 A B 59 -6.368 -19.170 10.681 1.00 26.06 C
ATOM 19 N6 A B 59 -5.965 -19.328 9.414 1.00 25.51 N
ATOM 20 N1 A B 59 -6.732 -17.944 11.112 1.00 25.90 N
ATOM 21 C2 A B 59 -7.128 -17.799 12.384 1.00 27.16 C
ATOM 22 N3 A B 59 -7.237 -18.723 13.342 1.00 27.15 N
ATOM 23 C4 A B 59 -6.876 -19.934 12.882 1.00 27.12 C
ATOM 24 P A B 60 -11.740 -22.939 15.799 1.00 29.16 P
ATOM 25 OP1 A B 60 -12.564 -23.208 16.995 1.00 30.09 O
ATOM 26 OP2 A B 60 -11.766 -23.877 14.657 1.00 29.82 O
ATOM 27 O5' A B 60 -12.096 -21.484 15.242 1.00 29.35 O
TER
ATOM 2 P C A 14 -7.068 -17.332 17.831 1.00 38.71 P
ATOM 3 OP1 C A 14 -8.078 -18.355 17.475 1.00 38.24 O
ATOM 4 OP2 C A 14 -7.239 -16.507 19.048 1.00 39.10 O
ATOM 5 O5' C A 14 -5.613 -18.001 17.882 1.00 40.02 O
ATOM 6 C5' C A 14 -5.405 -19.299 18.423 1.00 40.17 C
ATOM 7 C4' C A 14 -4.189 -19.945 17.780 1.00 40.55 C
ATOM 8 O4' C A 14 -4.488 -20.247 16.395 1.00 40.45 O
ATOM 9 C3' C A 14 -2.945 -19.070 17.681 1.00 40.93 C
ATOM 10 O3' C A 14 -2.234 -19.029 18.918 1.00 41.11 O
ATOM 11 C2' C A 14 -2.165 -19.799 16.590 1.00 40.71 C
ATOM 12 O2' C A 14 -1.451 -20.917 17.080 1.00 41.80 O
ATOM 13 C1' C A 14 -3.279 -20.276 15.659 1.00 39.91 C
ATOM 14 N1 C A 14 -3.410 -19.452 14.419 1.00 39.23 N
ATOM 15 C2 C A 14 -3.006 -19.993 13.192 1.00 39.30 C
ATOM 16 O2 C A 14 -2.561 -21.147 13.154 1.00 39.92 O
ATOM 17 N3 C A 14 -3.115 -19.235 12.074 1.00 38.80 N
ATOM 18 C4 C A 14 -3.596 -17.993 12.151 1.00 38.19 C
ATOM 19 N4 C A 14 -3.683 -17.290 11.019 1.00 37.93 N
ATOM 20 C5 C A 14 -4.002 -17.420 13.392 1.00 38.44 C
ATOM 21 C6 C A 14 -3.891 -18.177 14.490 1.00 38.98 C
ATOM 22 P U A 15 -1.571 -17.661 19.429 1.00 41.67 P
ATOM 23 OP1 U A 15 -0.975 -17.919 20.759 1.00 41.62 O
ATOM 24 OP2 U A 15 -2.565 -16.574 19.282 1.00 41.71 O
ATOM 25 O5' U A 15 -0.401 -17.404 18.364 1.00 40.67 O
TER
ATOM 1 O3' U B 58 -8.785 -25.780 11.713 1.00 34.18 O
ATOM 2 P A B 59 -8.067 -26.205 13.078 1.00 34.53 P
ATOM 3 OP1 A B 59 -6.663 -26.569 12.780 1.00 34.89 O
ATOM 4 OP2 A B 59 -8.948 -27.173 13.771 1.00 34.83 O
ATOM 5 O5' A B 59 -8.085 -24.839 13.907 1.00 32.41 O
ATOM 6 C5' A B 59 -7.909 -24.841 15.315 1.00 30.38 C
ATOM 7 C4' A B 59 -7.954 -23.416 15.831 1.00 29.24 C
ATOM 8 O4' A B 59 -6.813 -22.692 15.311 1.00 28.36 O
ATOM 9 C3' A B 59 -9.165 -22.624 15.365 1.00 28.80 C
ATOM 10 O3' A B 59 -10.224 -22.796 16.294 1.00 29.62 O
ATOM 11 C2' A B 59 -8.652 -21.185 15.360 1.00 28.21 C
ATOM 12 O2' A B 59 -8.708 -20.589 16.641 1.00 27.47 O
ATOM 13 C1' A B 59 -7.193 -21.371 14.967 1.00 27.79 C
ATOM 14 N9 A B 59 -6.867 -21.132 13.563 1.00 27.32 N
ATOM 15 C8 A B 59 -6.420 -22.067 12.670 1.00 27.80 C
ATOM 16 N7 A B 59 -6.164 -21.585 11.479 1.00 27.63 N
ATOM 17 C5 A B 59 -6.448 -20.234 11.600 1.00 26.98 C
ATOM 18 C6 A B 59 -6.368 -19.170 10.681 1.00 26.06 C
ATOM 19 N6 A B 59 -5.965 -19.328 9.414 1.00 25.51 N
ATOM 20 N1 A B 59 -6.732 -17.944 11.112 1.00 25.90 N
ATOM 21 C2 A B 59 -7.128 -17.799 12.384 1.00 27.16 C
ATOM 22 N3 A B 59 -7.237 -18.723 13.342 1.00 27.15 N
ATOM 23 C4 A B 59 -6.876 -19.934 12.882 1.00 27.12 C
ATOM 24 P A B 60 -11.740 -22.939 15.799 1.00 29.16 P
ATOM 25 OP1 A B 60 -12.564 -23.208 16.995 1.00 30.09 O
ATOM 26 OP2 A B 60 -11.766 -23.877 14.657 1.00 29.82 O
ATOM 27 O5' A B 60 -12.096 -21.484 15.242 1.00 29.35 O
TER
Atoms:
C2: (-3.006,-19.993,13.192)
OP1: (-8.078,-18.355,17.475)
OP2: (-7.239,-16.507,19.048)
C4: (-3.596,-17.993,12.151)
O5': (-5.613,-18.001,17.882)
C3': (-2.945,-19.070,17.681)
C1': (-3.279,-20.276,15.659)
O4': (-4.488,-20.247,16.395)
C5': (-5.405,-19.299,18.423)
P: (-7.068,-17.332,17.831)
O2: (-2.561,-21.147,13.154)
C4': (-4.189,-19.945,17.780)
C2': (-2.165,-19.799,16.590)
O2': (-1.451,-20.917,17.080)
N1: (-3.410,-19.452,14.419)
N3: (-3.115,-19.235,12.074)
N4: (-3.683,-17.290,11.019)
C6: (-3.891,-18.177,14.490)
C5: (-4.002,-17.420,13.392)
O3': (-2.234,-19.029,18.918)
OP1: (-8.078,-18.355,17.475)
OP2: (-7.239,-16.507,19.048)
C4: (-3.596,-17.993,12.151)
O5': (-5.613,-18.001,17.882)
C3': (-2.945,-19.070,17.681)
C1': (-3.279,-20.276,15.659)
O4': (-4.488,-20.247,16.395)
C5': (-5.405,-19.299,18.423)
P: (-7.068,-17.332,17.831)
O2: (-2.561,-21.147,13.154)
C4': (-4.189,-19.945,17.780)
C2': (-2.165,-19.799,16.590)
O2': (-1.451,-20.917,17.080)
N1: (-3.410,-19.452,14.419)
N3: (-3.115,-19.235,12.074)
N4: (-3.683,-17.290,11.019)
C6: (-3.891,-18.177,14.490)
C5: (-4.002,-17.420,13.392)
O3': (-2.234,-19.029,18.918)
OP1: (-6.663,-26.569,12.780)
OP2: (-8.948,-27.173,13.771)
C3': (-9.165,-22.624,15.365)
C1': (-7.193,-21.371,14.967)
C5': (-7.909,-24.841,15.315)
O4': (-6.813,-22.692,15.311)
C8: (-6.420,-22.067,12.670)
O2': (-8.708,-20.589,16.641)
C6: (-6.368,-19.170,10.681)
C5: (-6.448,-20.234,11.600)
C4: (-6.876,-19.934,12.882)
P: (-8.067,-26.205,13.078)
C4': (-7.954,-23.416,15.831)
C2': (-8.652,-21.185,15.360)
C2: (-7.128,-17.799,12.384)
N1: (-6.732,-17.944,11.112)
N3: (-7.237,-18.723,13.342)
N6: (-5.965,-19.328,9.414)
N7: (-6.164,-21.585,11.479)
N9: (-6.867,-21.132,13.563)
O5': (-8.085,-24.839,13.907)
O3': (-10.224,-22.796,16.294)
OP2: (-8.948,-27.173,13.771)
C3': (-9.165,-22.624,15.365)
C1': (-7.193,-21.371,14.967)
C5': (-7.909,-24.841,15.315)
O4': (-6.813,-22.692,15.311)
C8: (-6.420,-22.067,12.670)
O2': (-8.708,-20.589,16.641)
C6: (-6.368,-19.170,10.681)
C5: (-6.448,-20.234,11.600)
C4: (-6.876,-19.934,12.882)
P: (-8.067,-26.205,13.078)
C4': (-7.954,-23.416,15.831)
C2': (-8.652,-21.185,15.360)
C2: (-7.128,-17.799,12.384)
N1: (-6.732,-17.944,11.112)
N3: (-7.237,-18.723,13.342)
N6: (-5.965,-19.328,9.414)
N7: (-6.164,-21.585,11.479)
N9: (-6.867,-21.132,13.563)
O5': (-8.085,-24.839,13.907)
O3': (-10.224,-22.796,16.294)
Image (generated by PyMOL):