Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0617:02016
Extra
PDB:
ATOM 1 P A A 617 39.366 112.847 95.443 1.00 30.62 P
ATOM 2 OP1 A A 617 39.092 111.691 96.321 1.00 30.42 O
ATOM 3 OP2 A A 617 38.743 112.903 94.102 1.00 30.12 O
ATOM 4 O5' A A 617 39.020 114.179 96.255 1.00 31.33 O
ATOM 5 C5' A A 617 38.511 115.367 95.598 1.00 31.07 C
ATOM 6 C4' A A 617 39.064 116.614 96.261 1.00 31.61 C
ATOM 7 O4' A A 617 38.729 116.586 97.671 1.00 31.78 O
ATOM 8 C3' A A 617 40.582 116.769 96.239 1.00 31.76 C
ATOM 9 O3' A A 617 41.019 117.430 95.064 1.00 29.82 O
ATOM 10 C2' A A 617 40.844 117.658 97.441 1.00 32.27 C
ATOM 11 O2' A A 617 40.596 119.018 97.148 1.00 35.69 O
ATOM 12 C1' A A 617 39.795 117.148 98.427 1.00 33.35 C
ATOM 13 N9 A A 617 40.308 116.129 99.347 1.00 33.15 N
ATOM 14 C8 A A 617 39.917 114.819 99.457 1.00 32.82 C
ATOM 15 N7 A A 617 40.551 114.155 100.388 1.00 31.81 N
ATOM 16 C5 A A 617 41.418 115.088 100.932 1.00 31.18 C
ATOM 17 C6 A A 617 42.357 115.008 101.971 1.00 31.33 C
ATOM 18 N6 A A 617 42.579 113.899 102.686 1.00 30.87 N
ATOM 19 N1 A A 617 43.068 116.115 102.259 1.00 30.68 N
ATOM 20 C2 A A 617 42.835 117.224 101.555 1.00 31.35 C
ATOM 21 N3 A A 617 41.973 117.429 100.566 1.00 32.69 N
ATOM 22 C4 A A 617 41.287 116.306 100.297 1.00 32.44 C
ATOM 23 P A A 618 42.345 116.941 94.314 1.00 31.60 P
ATOM 24 OP1 A A 618 42.400 117.772 93.090 1.00 29.50 O
ATOM 25 OP2 A A 618 42.315 115.463 94.197 1.00 35.18 O
ATOM 26 O5' A A 618 43.564 117.251 95.302 1.00 30.30 O
TER
ATOM 1 O3' U B2015 42.386 108.740 109.893 1.00 29.91 O
ATOM 2 P G B2016 43.611 108.071 109.080 1.00 30.67 P
ATOM 3 OP1 G B2016 43.290 106.635 108.910 1.00 32.75 O
ATOM 4 OP2 G B2016 44.894 108.455 109.720 1.00 29.63 O
ATOM 5 O5' G B2016 43.561 108.765 107.648 1.00 29.09 O
ATOM 6 C5' G B2016 42.447 108.585 106.754 1.00 27.55 C
ATOM 7 C4' G B2016 42.549 109.566 105.605 1.00 30.25 C
ATOM 8 O4' G B2016 42.488 110.924 106.128 1.00 29.97 O
ATOM 9 C3' G B2016 43.871 109.517 104.852 1.00 30.37 C
ATOM 10 O3' G B2016 43.859 108.487 103.870 1.00 31.74 O
ATOM 11 C2' G B2016 43.979 110.920 104.266 1.00 29.82 C
ATOM 12 O2' G B2016 43.229 111.122 103.090 1.00 31.20 O
ATOM 13 C1' G B2016 43.354 111.762 105.379 1.00 30.35 C
ATOM 14 N9 G B2016 44.345 112.359 106.271 1.00 31.98 N
ATOM 15 C8 G B2016 44.913 111.803 107.395 1.00 31.37 C
ATOM 16 N7 G B2016 45.802 112.581 107.956 1.00 31.41 N
ATOM 17 C5 G B2016 45.821 113.718 107.159 1.00 30.78 C
ATOM 18 C6 G B2016 46.604 114.897 107.254 1.00 31.41 C
ATOM 19 O6 G B2016 47.489 115.172 108.080 1.00 31.92 O
ATOM 20 N1 G B2016 46.286 115.803 106.244 1.00 29.98 N
ATOM 21 C2 G B2016 45.349 115.593 105.261 1.00 28.70 C
ATOM 22 N2 G B2016 45.178 116.577 104.375 1.00 27.42 N
ATOM 23 N3 G B2016 44.632 114.498 105.153 1.00 29.27 N
ATOM 24 C4 G B2016 44.915 113.607 106.126 1.00 31.20 C
ATOM 25 P C B2017 45.124 107.500 103.720 1.00 32.75 P
ATOM 26 OP1 C B2017 44.703 106.417 102.804 1.00 29.74 O
ATOM 27 OP2 C B2017 45.652 107.147 105.072 1.00 34.09 O
ATOM 28 O5' C B2017 46.220 108.396 102.991 1.00 31.79 O
TER
ATOM 2 OP1 A A 617 39.092 111.691 96.321 1.00 30.42 O
ATOM 3 OP2 A A 617 38.743 112.903 94.102 1.00 30.12 O
ATOM 4 O5' A A 617 39.020 114.179 96.255 1.00 31.33 O
ATOM 5 C5' A A 617 38.511 115.367 95.598 1.00 31.07 C
ATOM 6 C4' A A 617 39.064 116.614 96.261 1.00 31.61 C
ATOM 7 O4' A A 617 38.729 116.586 97.671 1.00 31.78 O
ATOM 8 C3' A A 617 40.582 116.769 96.239 1.00 31.76 C
ATOM 9 O3' A A 617 41.019 117.430 95.064 1.00 29.82 O
ATOM 10 C2' A A 617 40.844 117.658 97.441 1.00 32.27 C
ATOM 11 O2' A A 617 40.596 119.018 97.148 1.00 35.69 O
ATOM 12 C1' A A 617 39.795 117.148 98.427 1.00 33.35 C
ATOM 13 N9 A A 617 40.308 116.129 99.347 1.00 33.15 N
ATOM 14 C8 A A 617 39.917 114.819 99.457 1.00 32.82 C
ATOM 15 N7 A A 617 40.551 114.155 100.388 1.00 31.81 N
ATOM 16 C5 A A 617 41.418 115.088 100.932 1.00 31.18 C
ATOM 17 C6 A A 617 42.357 115.008 101.971 1.00 31.33 C
ATOM 18 N6 A A 617 42.579 113.899 102.686 1.00 30.87 N
ATOM 19 N1 A A 617 43.068 116.115 102.259 1.00 30.68 N
ATOM 20 C2 A A 617 42.835 117.224 101.555 1.00 31.35 C
ATOM 21 N3 A A 617 41.973 117.429 100.566 1.00 32.69 N
ATOM 22 C4 A A 617 41.287 116.306 100.297 1.00 32.44 C
ATOM 23 P A A 618 42.345 116.941 94.314 1.00 31.60 P
ATOM 24 OP1 A A 618 42.400 117.772 93.090 1.00 29.50 O
ATOM 25 OP2 A A 618 42.315 115.463 94.197 1.00 35.18 O
ATOM 26 O5' A A 618 43.564 117.251 95.302 1.00 30.30 O
TER
ATOM 1 O3' U B2015 42.386 108.740 109.893 1.00 29.91 O
ATOM 2 P G B2016 43.611 108.071 109.080 1.00 30.67 P
ATOM 3 OP1 G B2016 43.290 106.635 108.910 1.00 32.75 O
ATOM 4 OP2 G B2016 44.894 108.455 109.720 1.00 29.63 O
ATOM 5 O5' G B2016 43.561 108.765 107.648 1.00 29.09 O
ATOM 6 C5' G B2016 42.447 108.585 106.754 1.00 27.55 C
ATOM 7 C4' G B2016 42.549 109.566 105.605 1.00 30.25 C
ATOM 8 O4' G B2016 42.488 110.924 106.128 1.00 29.97 O
ATOM 9 C3' G B2016 43.871 109.517 104.852 1.00 30.37 C
ATOM 10 O3' G B2016 43.859 108.487 103.870 1.00 31.74 O
ATOM 11 C2' G B2016 43.979 110.920 104.266 1.00 29.82 C
ATOM 12 O2' G B2016 43.229 111.122 103.090 1.00 31.20 O
ATOM 13 C1' G B2016 43.354 111.762 105.379 1.00 30.35 C
ATOM 14 N9 G B2016 44.345 112.359 106.271 1.00 31.98 N
ATOM 15 C8 G B2016 44.913 111.803 107.395 1.00 31.37 C
ATOM 16 N7 G B2016 45.802 112.581 107.956 1.00 31.41 N
ATOM 17 C5 G B2016 45.821 113.718 107.159 1.00 30.78 C
ATOM 18 C6 G B2016 46.604 114.897 107.254 1.00 31.41 C
ATOM 19 O6 G B2016 47.489 115.172 108.080 1.00 31.92 O
ATOM 20 N1 G B2016 46.286 115.803 106.244 1.00 29.98 N
ATOM 21 C2 G B2016 45.349 115.593 105.261 1.00 28.70 C
ATOM 22 N2 G B2016 45.178 116.577 104.375 1.00 27.42 N
ATOM 23 N3 G B2016 44.632 114.498 105.153 1.00 29.27 N
ATOM 24 C4 G B2016 44.915 113.607 106.126 1.00 31.20 C
ATOM 25 P C B2017 45.124 107.500 103.720 1.00 32.75 P
ATOM 26 OP1 C B2017 44.703 106.417 102.804 1.00 29.74 O
ATOM 27 OP2 C B2017 45.652 107.147 105.072 1.00 34.09 O
ATOM 28 O5' C B2017 46.220 108.396 102.991 1.00 31.79 O
TER
Atoms:
OP1: (39.092,111.691,96.321)
OP2: (38.743,112.903,94.102)
C3': (40.582,116.769,96.239)
C1': (39.795,117.148,98.427)
C5': (38.511,115.367,95.598)
O4': (38.729,116.586,97.671)
C8: (39.917,114.819,99.457)
O2': (40.596,119.018,97.148)
C6: (42.357,115.008,101.971)
C5: (41.418,115.088,100.932)
C4: (41.287,116.306,100.297)
P: (39.366,112.847,95.443)
C4': (39.064,116.614,96.261)
C2': (40.844,117.658,97.441)
C2: (42.835,117.224,101.555)
N1: (43.068,116.115,102.259)
N3: (41.973,117.429,100.566)
N6: (42.579,113.899,102.686)
N7: (40.551,114.155,100.388)
N9: (40.308,116.129,99.347)
O5': (39.020,114.179,96.255)
O3': (41.019,117.430,95.064)
OP2: (38.743,112.903,94.102)
C3': (40.582,116.769,96.239)
C1': (39.795,117.148,98.427)
C5': (38.511,115.367,95.598)
O4': (38.729,116.586,97.671)
C8: (39.917,114.819,99.457)
O2': (40.596,119.018,97.148)
C6: (42.357,115.008,101.971)
C5: (41.418,115.088,100.932)
C4: (41.287,116.306,100.297)
P: (39.366,112.847,95.443)
C4': (39.064,116.614,96.261)
C2': (40.844,117.658,97.441)
C2: (42.835,117.224,101.555)
N1: (43.068,116.115,102.259)
N3: (41.973,117.429,100.566)
N6: (42.579,113.899,102.686)
N7: (40.551,114.155,100.388)
N9: (40.308,116.129,99.347)
O5': (39.020,114.179,96.255)
O3': (41.019,117.430,95.064)
OP1: (43.290,106.635,108.910)
OP2: (44.894,108.455,109.720)
C3': (43.871,109.517,104.852)
C1': (43.354,111.762,105.379)
C5': (42.447,108.585,106.754)
O6: (47.489,115.172,108.080)
O4': (42.488,110.924,106.128)
C8: (44.913,111.803,107.395)
C2: (45.349,115.593,105.261)
C6: (46.604,114.897,107.254)
C5: (45.821,113.718,107.159)
C4: (44.915,113.607,106.126)
P: (43.611,108.071,109.080)
C4': (42.549,109.566,105.605)
C2': (43.979,110.920,104.266)
O2': (43.229,111.122,103.090)
N1: (46.286,115.803,106.244)
N2: (45.178,116.577,104.375)
N3: (44.632,114.498,105.153)
N7: (45.802,112.581,107.956)
N9: (44.345,112.359,106.271)
O5': (43.561,108.765,107.648)
O3': (43.859,108.487,103.870)
OP2: (44.894,108.455,109.720)
C3': (43.871,109.517,104.852)
C1': (43.354,111.762,105.379)
C5': (42.447,108.585,106.754)
O6: (47.489,115.172,108.080)
O4': (42.488,110.924,106.128)
C8: (44.913,111.803,107.395)
C2: (45.349,115.593,105.261)
C6: (46.604,114.897,107.254)
C5: (45.821,113.718,107.159)
C4: (44.915,113.607,106.126)
P: (43.611,108.071,109.080)
C4': (42.549,109.566,105.605)
C2': (43.979,110.920,104.266)
O2': (43.229,111.122,103.090)
N1: (46.286,115.803,106.244)
N2: (45.178,116.577,104.375)
N3: (44.632,114.498,105.153)
N7: (45.802,112.581,107.956)
N9: (44.345,112.359,106.271)
O5': (43.561,108.765,107.648)
O3': (43.859,108.487,103.870)
Image (generated by PyMOL):