Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3MDI:C5:C1
Extra
PDB:
ATOM 1 O3' A A 4 31.134 29.560 2.997 1.00 25.14 O
ATOM 2 P A A 5 30.895 28.141 3.691 1.00 24.12 P
ATOM 3 OP1 A A 5 29.474 28.051 4.116 1.00 26.90 O
ATOM 4 OP2 A A 5 31.999 28.039 4.680 1.00 23.10 O
ATOM 5 O5' A A 5 31.118 27.164 2.470 1.00 21.64 O
ATOM 6 C5' A A 5 32.211 26.263 2.448 1.00 15.70 C
ATOM 7 C4' A A 5 32.679 26.063 1.030 1.00 20.78 C
ATOM 8 O4' A A 5 31.794 25.127 0.353 1.00 22.26 O
ATOM 9 C3' A A 5 32.728 27.311 0.147 1.00 23.97 C
ATOM 10 O3' A A 5 33.945 27.338 -0.594 1.00 23.24 O
ATOM 11 C2' A A 5 31.579 27.113 -0.838 1.00 22.05 C
ATOM 12 O2' A A 5 31.818 27.689 -2.100 1.00 23.44 O
ATOM 13 C1' A A 5 31.542 25.597 -0.958 1.00 23.87 C
ATOM 14 N9 A A 5 30.275 25.020 -1.416 1.00 22.93 N
ATOM 15 C8 A A 5 29.017 25.576 -1.437 1.00 23.36 C
ATOM 16 N7 A A 5 28.095 24.756 -1.895 1.00 25.72 N
ATOM 17 C5 A A 5 28.797 23.595 -2.192 1.00 20.29 C
ATOM 18 C6 A A 5 28.395 22.352 -2.708 1.00 23.21 C
ATOM 19 N6 A A 5 27.134 22.050 -3.042 1.00 19.77 N
ATOM 20 N1 A A 5 29.356 21.418 -2.882 1.00 22.25 N
ATOM 21 C2 A A 5 30.620 21.717 -2.561 1.00 21.48 C
ATOM 22 N3 A A 5 31.119 22.838 -2.065 1.00 18.84 N
ATOM 23 C4 A A 5 30.138 23.745 -1.906 1.00 19.15 C
TER
ATOM 1 P G B 1 20.040 20.728 -5.254 1.00 21.27 P
ATOM 2 OP1 G B 1 19.470 22.036 -5.667 1.00 30.16 O
ATOM 3 OP2 G B 1 20.112 19.634 -6.236 1.00 24.91 O
ATOM 4 O5' G B 1 21.453 20.929 -4.588 1.00 24.15 O
ATOM 5 C5' G B 1 21.764 22.115 -3.867 1.00 25.15 C
ATOM 6 C4' G B 1 23.183 22.530 -4.149 1.00 22.22 C
ATOM 7 O4' G B 1 24.049 21.381 -3.937 1.00 23.11 O
ATOM 8 C3' G B 1 23.422 22.979 -5.591 1.00 24.52 C
ATOM 9 O3' G B 1 24.513 23.895 -5.586 1.00 27.03 O
ATOM 10 C2' G B 1 23.847 21.677 -6.261 1.00 22.52 C
ATOM 11 O2' G B 1 24.579 21.810 -7.459 1.00 20.63 O
ATOM 12 C1' G B 1 24.696 21.059 -5.155 1.00 22.44 C
ATOM 13 N9 G B 1 24.833 19.609 -5.294 1.00 22.02 N
ATOM 14 C8 G B 1 23.942 18.746 -5.896 1.00 20.82 C
ATOM 15 N7 G B 1 24.358 17.506 -5.900 1.00 20.41 N
ATOM 16 C5 G B 1 25.601 17.569 -5.286 1.00 17.35 C
ATOM 17 C6 G B 1 26.527 16.543 -5.004 1.00 20.02 C
ATOM 18 O6 G B 1 26.409 15.337 -5.262 1.00 19.49 O
ATOM 19 N1 G B 1 27.666 17.039 -4.356 1.00 17.77 N
ATOM 20 C2 G B 1 27.887 18.359 -4.036 1.00 17.48 C
ATOM 21 N2 G B 1 29.036 18.657 -3.422 1.00 19.64 N
ATOM 22 N3 G B 1 27.028 19.325 -4.288 1.00 19.66 N
ATOM 23 C4 G B 1 25.914 18.858 -4.908 1.00 21.06 C
ATOM 24 P U B 2 24.465 25.267 -6.402 1.00 29.62 P
ATOM 25 OP1 U B 2 23.656 26.242 -5.623 1.00 24.56 O
ATOM 26 OP2 U B 2 24.141 24.864 -7.791 1.00 25.83 O
ATOM 27 O5' U B 2 25.985 25.717 -6.309 1.00 29.07 O
TER
ATOM 2 P A A 5 30.895 28.141 3.691 1.00 24.12 P
ATOM 3 OP1 A A 5 29.474 28.051 4.116 1.00 26.90 O
ATOM 4 OP2 A A 5 31.999 28.039 4.680 1.00 23.10 O
ATOM 5 O5' A A 5 31.118 27.164 2.470 1.00 21.64 O
ATOM 6 C5' A A 5 32.211 26.263 2.448 1.00 15.70 C
ATOM 7 C4' A A 5 32.679 26.063 1.030 1.00 20.78 C
ATOM 8 O4' A A 5 31.794 25.127 0.353 1.00 22.26 O
ATOM 9 C3' A A 5 32.728 27.311 0.147 1.00 23.97 C
ATOM 10 O3' A A 5 33.945 27.338 -0.594 1.00 23.24 O
ATOM 11 C2' A A 5 31.579 27.113 -0.838 1.00 22.05 C
ATOM 12 O2' A A 5 31.818 27.689 -2.100 1.00 23.44 O
ATOM 13 C1' A A 5 31.542 25.597 -0.958 1.00 23.87 C
ATOM 14 N9 A A 5 30.275 25.020 -1.416 1.00 22.93 N
ATOM 15 C8 A A 5 29.017 25.576 -1.437 1.00 23.36 C
ATOM 16 N7 A A 5 28.095 24.756 -1.895 1.00 25.72 N
ATOM 17 C5 A A 5 28.797 23.595 -2.192 1.00 20.29 C
ATOM 18 C6 A A 5 28.395 22.352 -2.708 1.00 23.21 C
ATOM 19 N6 A A 5 27.134 22.050 -3.042 1.00 19.77 N
ATOM 20 N1 A A 5 29.356 21.418 -2.882 1.00 22.25 N
ATOM 21 C2 A A 5 30.620 21.717 -2.561 1.00 21.48 C
ATOM 22 N3 A A 5 31.119 22.838 -2.065 1.00 18.84 N
ATOM 23 C4 A A 5 30.138 23.745 -1.906 1.00 19.15 C
TER
ATOM 1 P G B 1 20.040 20.728 -5.254 1.00 21.27 P
ATOM 2 OP1 G B 1 19.470 22.036 -5.667 1.00 30.16 O
ATOM 3 OP2 G B 1 20.112 19.634 -6.236 1.00 24.91 O
ATOM 4 O5' G B 1 21.453 20.929 -4.588 1.00 24.15 O
ATOM 5 C5' G B 1 21.764 22.115 -3.867 1.00 25.15 C
ATOM 6 C4' G B 1 23.183 22.530 -4.149 1.00 22.22 C
ATOM 7 O4' G B 1 24.049 21.381 -3.937 1.00 23.11 O
ATOM 8 C3' G B 1 23.422 22.979 -5.591 1.00 24.52 C
ATOM 9 O3' G B 1 24.513 23.895 -5.586 1.00 27.03 O
ATOM 10 C2' G B 1 23.847 21.677 -6.261 1.00 22.52 C
ATOM 11 O2' G B 1 24.579 21.810 -7.459 1.00 20.63 O
ATOM 12 C1' G B 1 24.696 21.059 -5.155 1.00 22.44 C
ATOM 13 N9 G B 1 24.833 19.609 -5.294 1.00 22.02 N
ATOM 14 C8 G B 1 23.942 18.746 -5.896 1.00 20.82 C
ATOM 15 N7 G B 1 24.358 17.506 -5.900 1.00 20.41 N
ATOM 16 C5 G B 1 25.601 17.569 -5.286 1.00 17.35 C
ATOM 17 C6 G B 1 26.527 16.543 -5.004 1.00 20.02 C
ATOM 18 O6 G B 1 26.409 15.337 -5.262 1.00 19.49 O
ATOM 19 N1 G B 1 27.666 17.039 -4.356 1.00 17.77 N
ATOM 20 C2 G B 1 27.887 18.359 -4.036 1.00 17.48 C
ATOM 21 N2 G B 1 29.036 18.657 -3.422 1.00 19.64 N
ATOM 22 N3 G B 1 27.028 19.325 -4.288 1.00 19.66 N
ATOM 23 C4 G B 1 25.914 18.858 -4.908 1.00 21.06 C
ATOM 24 P U B 2 24.465 25.267 -6.402 1.00 29.62 P
ATOM 25 OP1 U B 2 23.656 26.242 -5.623 1.00 24.56 O
ATOM 26 OP2 U B 2 24.141 24.864 -7.791 1.00 25.83 O
ATOM 27 O5' U B 2 25.985 25.717 -6.309 1.00 29.07 O
TER
Atoms:
OP1: (29.474,28.051,4.116)
OP2: (31.999,28.039,4.680)
C3': (32.728,27.311,0.147)
C1': (31.542,25.597,-0.958)
C5': (32.211,26.263,2.448)
O4': (31.794,25.127,0.353)
C8: (29.017,25.576,-1.437)
O2': (31.818,27.689,-2.100)
C6: (28.395,22.352,-2.708)
C5: (28.797,23.595,-2.192)
C4: (30.138,23.745,-1.906)
P: (30.895,28.141,3.691)
C4': (32.679,26.063,1.030)
C2': (31.579,27.113,-0.838)
C2: (30.620,21.717,-2.561)
N1: (29.356,21.418,-2.882)
N3: (31.119,22.838,-2.065)
N6: (27.134,22.050,-3.042)
N7: (28.095,24.756,-1.895)
N9: (30.275,25.020,-1.416)
O5': (31.118,27.164,2.470)
O3': (33.945,27.338,-0.594)
OP2: (31.999,28.039,4.680)
C3': (32.728,27.311,0.147)
C1': (31.542,25.597,-0.958)
C5': (32.211,26.263,2.448)
O4': (31.794,25.127,0.353)
C8: (29.017,25.576,-1.437)
O2': (31.818,27.689,-2.100)
C6: (28.395,22.352,-2.708)
C5: (28.797,23.595,-2.192)
C4: (30.138,23.745,-1.906)
P: (30.895,28.141,3.691)
C4': (32.679,26.063,1.030)
C2': (31.579,27.113,-0.838)
C2: (30.620,21.717,-2.561)
N1: (29.356,21.418,-2.882)
N3: (31.119,22.838,-2.065)
N6: (27.134,22.050,-3.042)
N7: (28.095,24.756,-1.895)
N9: (30.275,25.020,-1.416)
O5': (31.118,27.164,2.470)
O3': (33.945,27.338,-0.594)
OP1: (19.470,22.036,-5.667)
OP2: (20.112,19.634,-6.236)
C3': (23.422,22.979,-5.591)
C1': (24.696,21.059,-5.155)
C5': (21.764,22.115,-3.867)
O6: (26.409,15.337,-5.262)
O4': (24.049,21.381,-3.937)
C8: (23.942,18.746,-5.896)
C2: (27.887,18.359,-4.036)
C6: (26.527,16.543,-5.004)
C5: (25.601,17.569,-5.286)
C4: (25.914,18.858,-4.908)
P: (20.040,20.728,-5.254)
C4': (23.183,22.530,-4.149)
C2': (23.847,21.677,-6.261)
O2': (24.579,21.810,-7.459)
N1: (27.666,17.039,-4.356)
N2: (29.036,18.657,-3.422)
N3: (27.028,19.325,-4.288)
N7: (24.358,17.506,-5.900)
N9: (24.833,19.609,-5.294)
O5': (21.453,20.929,-4.588)
O3': (24.513,23.895,-5.586)
OP2: (20.112,19.634,-6.236)
C3': (23.422,22.979,-5.591)
C1': (24.696,21.059,-5.155)
C5': (21.764,22.115,-3.867)
O6: (26.409,15.337,-5.262)
O4': (24.049,21.381,-3.937)
C8: (23.942,18.746,-5.896)
C2: (27.887,18.359,-4.036)
C6: (26.527,16.543,-5.004)
C5: (25.601,17.569,-5.286)
C4: (25.914,18.858,-4.908)
P: (20.040,20.728,-5.254)
C4': (23.183,22.530,-4.149)
C2': (23.847,21.677,-6.261)
O2': (24.579,21.810,-7.459)
N1: (27.666,17.039,-4.356)
N2: (29.036,18.657,-3.422)
N3: (27.028,19.325,-4.288)
N7: (24.358,17.506,-5.900)
N9: (24.833,19.609,-5.294)
O5': (21.453,20.929,-4.588)
O3': (24.513,23.895,-5.586)
Image (generated by PyMOL):