Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3K1V:A23:A4
Extra
PDB:
ATOM 1 O3' A A 22 -20.433 -8.910 27.404 1.00 33.36 O
ATOM 2 P A A 23 -20.224 -10.370 26.754 1.00 34.27 P
ATOM 3 OP1 A A 23 -20.833 -11.354 27.687 1.00 30.23 O
ATOM 4 OP2 A A 23 -18.798 -10.509 26.368 1.00 32.66 O
ATOM 5 O5' A A 23 -21.066 -10.342 25.397 1.00 32.28 O
ATOM 6 C5' A A 23 -22.474 -10.536 25.393 1.00 30.07 C
ATOM 7 C4' A A 23 -22.998 -10.618 23.972 1.00 38.30 C
ATOM 8 O4' A A 23 -22.725 -9.371 23.277 1.00 32.60 O
ATOM 9 C3' A A 23 -22.379 -11.696 23.090 1.00 41.91 C
ATOM 10 O3' A A 23 -23.065 -12.933 23.271 1.00 48.38 O
ATOM 11 C2' A A 23 -22.595 -11.132 21.690 1.00 36.29 C
ATOM 12 O2' A A 23 -23.912 -11.320 21.222 1.00 33.97 O
ATOM 13 C1' A A 23 -22.370 -9.639 21.927 1.00 37.63 C
ATOM 14 N9 A A 23 -20.983 -9.215 21.723 1.00 32.89 N
ATOM 15 C8 A A 23 -19.989 -9.137 22.666 1.00 28.75 C
ATOM 16 N7 A A 23 -18.852 -8.681 22.199 1.00 30.53 N
ATOM 17 C5 A A 23 -19.110 -8.452 20.855 1.00 23.32 C
ATOM 18 C6 A A 23 -18.309 -7.961 19.805 1.00 23.48 C
ATOM 19 N6 A A 23 -17.034 -7.593 19.953 1.00 21.49 N
ATOM 20 N1 A A 23 -18.870 -7.863 18.583 1.00 22.90 N
ATOM 21 C2 A A 23 -20.146 -8.232 18.433 1.00 17.69 C
ATOM 22 N3 A A 23 -20.999 -8.702 19.338 1.00 27.63 N
ATOM 23 C4 A A 23 -20.414 -8.788 20.544 1.00 23.85 C
ATOM 24 P A A 24 -22.436 -14.295 22.692 1.00 42.35 P
ATOM 25 OP1 A A 24 -23.197 -15.415 23.301 1.00 56.55 O
ATOM 26 OP2 A A 24 -20.963 -14.239 22.849 1.00 44.28 O
ATOM 27 O5' A A 24 -22.791 -14.255 21.141 1.00 44.49 O
TER
ATOM 1 O3' G B 3 -9.551 -2.102 20.857 1.00 20.17 O
ATOM 2 P G B 4 -9.247 -3.568 20.257 1.00 24.25 P
ATOM 3 OP1 G B 4 -8.203 -4.232 21.073 1.00 27.41 O
ATOM 4 OP2 G B 4 -9.043 -3.411 18.795 1.00 26.39 O
ATOM 5 O5' G B 4 -10.615 -4.353 20.454 1.00 21.48 O
ATOM 6 C5' G B 4 -11.171 -4.546 21.748 1.00 17.73 C
ATOM 7 C4' G B 4 -12.431 -5.369 21.649 1.00 23.62 C
ATOM 8 O4' G B 4 -13.403 -4.658 20.839 1.00 25.69 O
ATOM 9 C3' G B 4 -12.260 -6.719 20.967 1.00 24.85 C
ATOM 10 O3' G B 4 -11.846 -7.677 21.935 1.00 24.99 O
ATOM 11 C2' G B 4 -13.657 -6.986 20.416 1.00 26.16 C
ATOM 12 O2' G B 4 -14.554 -7.507 21.375 1.00 27.82 O
ATOM 13 C1' G B 4 -14.103 -5.576 20.015 1.00 25.58 C
ATOM 14 N9 G B 4 -13.810 -5.241 18.627 1.00 18.67 N
ATOM 15 C8 G B 4 -12.658 -4.664 18.143 1.00 27.67 C
ATOM 16 N7 G B 4 -12.679 -4.479 16.852 1.00 15.34 N
ATOM 17 C5 G B 4 -13.919 -4.962 16.460 1.00 24.64 C
ATOM 18 C6 G B 4 -14.504 -5.041 15.177 1.00 27.35 C
ATOM 19 O6 G B 4 -14.030 -4.683 14.098 1.00 18.21 O
ATOM 20 N1 G B 4 -15.772 -5.617 15.226 1.00 31.42 N
ATOM 21 C2 G B 4 -16.396 -6.057 16.368 1.00 24.66 C
ATOM 22 N2 G B 4 -17.619 -6.583 16.214 1.00 24.15 N
ATOM 23 N3 G B 4 -15.861 -5.985 17.573 1.00 29.19 N
ATOM 24 C4 G B 4 -14.628 -5.435 17.546 1.00 19.81 C
ATOM 25 P U B 5 -11.258 -9.102 21.474 1.00 26.53 P
ATOM 26 OP1 U B 5 -10.085 -9.408 22.326 1.00 19.81 O
ATOM 27 OP2 U B 5 -11.127 -9.142 19.995 1.00 22.10 O
ATOM 28 O5' U B 5 -12.406 -10.114 21.896 1.00 32.05 O
TER
ATOM 2 P A A 23 -20.224 -10.370 26.754 1.00 34.27 P
ATOM 3 OP1 A A 23 -20.833 -11.354 27.687 1.00 30.23 O
ATOM 4 OP2 A A 23 -18.798 -10.509 26.368 1.00 32.66 O
ATOM 5 O5' A A 23 -21.066 -10.342 25.397 1.00 32.28 O
ATOM 6 C5' A A 23 -22.474 -10.536 25.393 1.00 30.07 C
ATOM 7 C4' A A 23 -22.998 -10.618 23.972 1.00 38.30 C
ATOM 8 O4' A A 23 -22.725 -9.371 23.277 1.00 32.60 O
ATOM 9 C3' A A 23 -22.379 -11.696 23.090 1.00 41.91 C
ATOM 10 O3' A A 23 -23.065 -12.933 23.271 1.00 48.38 O
ATOM 11 C2' A A 23 -22.595 -11.132 21.690 1.00 36.29 C
ATOM 12 O2' A A 23 -23.912 -11.320 21.222 1.00 33.97 O
ATOM 13 C1' A A 23 -22.370 -9.639 21.927 1.00 37.63 C
ATOM 14 N9 A A 23 -20.983 -9.215 21.723 1.00 32.89 N
ATOM 15 C8 A A 23 -19.989 -9.137 22.666 1.00 28.75 C
ATOM 16 N7 A A 23 -18.852 -8.681 22.199 1.00 30.53 N
ATOM 17 C5 A A 23 -19.110 -8.452 20.855 1.00 23.32 C
ATOM 18 C6 A A 23 -18.309 -7.961 19.805 1.00 23.48 C
ATOM 19 N6 A A 23 -17.034 -7.593 19.953 1.00 21.49 N
ATOM 20 N1 A A 23 -18.870 -7.863 18.583 1.00 22.90 N
ATOM 21 C2 A A 23 -20.146 -8.232 18.433 1.00 17.69 C
ATOM 22 N3 A A 23 -20.999 -8.702 19.338 1.00 27.63 N
ATOM 23 C4 A A 23 -20.414 -8.788 20.544 1.00 23.85 C
ATOM 24 P A A 24 -22.436 -14.295 22.692 1.00 42.35 P
ATOM 25 OP1 A A 24 -23.197 -15.415 23.301 1.00 56.55 O
ATOM 26 OP2 A A 24 -20.963 -14.239 22.849 1.00 44.28 O
ATOM 27 O5' A A 24 -22.791 -14.255 21.141 1.00 44.49 O
TER
ATOM 1 O3' G B 3 -9.551 -2.102 20.857 1.00 20.17 O
ATOM 2 P G B 4 -9.247 -3.568 20.257 1.00 24.25 P
ATOM 3 OP1 G B 4 -8.203 -4.232 21.073 1.00 27.41 O
ATOM 4 OP2 G B 4 -9.043 -3.411 18.795 1.00 26.39 O
ATOM 5 O5' G B 4 -10.615 -4.353 20.454 1.00 21.48 O
ATOM 6 C5' G B 4 -11.171 -4.546 21.748 1.00 17.73 C
ATOM 7 C4' G B 4 -12.431 -5.369 21.649 1.00 23.62 C
ATOM 8 O4' G B 4 -13.403 -4.658 20.839 1.00 25.69 O
ATOM 9 C3' G B 4 -12.260 -6.719 20.967 1.00 24.85 C
ATOM 10 O3' G B 4 -11.846 -7.677 21.935 1.00 24.99 O
ATOM 11 C2' G B 4 -13.657 -6.986 20.416 1.00 26.16 C
ATOM 12 O2' G B 4 -14.554 -7.507 21.375 1.00 27.82 O
ATOM 13 C1' G B 4 -14.103 -5.576 20.015 1.00 25.58 C
ATOM 14 N9 G B 4 -13.810 -5.241 18.627 1.00 18.67 N
ATOM 15 C8 G B 4 -12.658 -4.664 18.143 1.00 27.67 C
ATOM 16 N7 G B 4 -12.679 -4.479 16.852 1.00 15.34 N
ATOM 17 C5 G B 4 -13.919 -4.962 16.460 1.00 24.64 C
ATOM 18 C6 G B 4 -14.504 -5.041 15.177 1.00 27.35 C
ATOM 19 O6 G B 4 -14.030 -4.683 14.098 1.00 18.21 O
ATOM 20 N1 G B 4 -15.772 -5.617 15.226 1.00 31.42 N
ATOM 21 C2 G B 4 -16.396 -6.057 16.368 1.00 24.66 C
ATOM 22 N2 G B 4 -17.619 -6.583 16.214 1.00 24.15 N
ATOM 23 N3 G B 4 -15.861 -5.985 17.573 1.00 29.19 N
ATOM 24 C4 G B 4 -14.628 -5.435 17.546 1.00 19.81 C
ATOM 25 P U B 5 -11.258 -9.102 21.474 1.00 26.53 P
ATOM 26 OP1 U B 5 -10.085 -9.408 22.326 1.00 19.81 O
ATOM 27 OP2 U B 5 -11.127 -9.142 19.995 1.00 22.10 O
ATOM 28 O5' U B 5 -12.406 -10.114 21.896 1.00 32.05 O
TER
Atoms:
OP1: (-20.833,-11.354,27.687)
OP2: (-18.798,-10.509,26.368)
C3': (-22.379,-11.696,23.090)
C1': (-22.370,-9.639,21.927)
C5': (-22.474,-10.536,25.393)
O4': (-22.725,-9.371,23.277)
C8: (-19.989,-9.137,22.666)
O2': (-23.912,-11.320,21.222)
C6: (-18.309,-7.961,19.805)
C5: (-19.110,-8.452,20.855)
C4: (-20.414,-8.788,20.544)
P: (-20.224,-10.370,26.754)
C4': (-22.998,-10.618,23.972)
C2': (-22.595,-11.132,21.690)
C2: (-20.146,-8.232,18.433)
N1: (-18.870,-7.863,18.583)
N3: (-20.999,-8.702,19.338)
N6: (-17.034,-7.593,19.953)
N7: (-18.852,-8.681,22.199)
N9: (-20.983,-9.215,21.723)
O5': (-21.066,-10.342,25.397)
O3': (-23.065,-12.933,23.271)
OP2: (-18.798,-10.509,26.368)
C3': (-22.379,-11.696,23.090)
C1': (-22.370,-9.639,21.927)
C5': (-22.474,-10.536,25.393)
O4': (-22.725,-9.371,23.277)
C8: (-19.989,-9.137,22.666)
O2': (-23.912,-11.320,21.222)
C6: (-18.309,-7.961,19.805)
C5: (-19.110,-8.452,20.855)
C4: (-20.414,-8.788,20.544)
P: (-20.224,-10.370,26.754)
C4': (-22.998,-10.618,23.972)
C2': (-22.595,-11.132,21.690)
C2: (-20.146,-8.232,18.433)
N1: (-18.870,-7.863,18.583)
N3: (-20.999,-8.702,19.338)
N6: (-17.034,-7.593,19.953)
N7: (-18.852,-8.681,22.199)
N9: (-20.983,-9.215,21.723)
O5': (-21.066,-10.342,25.397)
O3': (-23.065,-12.933,23.271)
OP1: (-8.203,-4.232,21.073)
OP2: (-9.043,-3.411,18.795)
C3': (-12.260,-6.719,20.967)
C1': (-14.103,-5.576,20.015)
C5': (-11.171,-4.546,21.748)
O6: (-14.030,-4.683,14.098)
O4': (-13.403,-4.658,20.839)
C8: (-12.658,-4.664,18.143)
C2: (-16.396,-6.057,16.368)
C6: (-14.504,-5.041,15.177)
C5: (-13.919,-4.962,16.460)
C4: (-14.628,-5.435,17.546)
P: (-9.247,-3.568,20.257)
C4': (-12.431,-5.369,21.649)
C2': (-13.657,-6.986,20.416)
O2': (-14.554,-7.507,21.375)
N1: (-15.772,-5.617,15.226)
N2: (-17.619,-6.583,16.214)
N3: (-15.861,-5.985,17.573)
N7: (-12.679,-4.479,16.852)
N9: (-13.810,-5.241,18.627)
O5': (-10.615,-4.353,20.454)
O3': (-11.846,-7.677,21.935)
OP2: (-9.043,-3.411,18.795)
C3': (-12.260,-6.719,20.967)
C1': (-14.103,-5.576,20.015)
C5': (-11.171,-4.546,21.748)
O6: (-14.030,-4.683,14.098)
O4': (-13.403,-4.658,20.839)
C8: (-12.658,-4.664,18.143)
C2: (-16.396,-6.057,16.368)
C6: (-14.504,-5.041,15.177)
C5: (-13.919,-4.962,16.460)
C4: (-14.628,-5.435,17.546)
P: (-9.247,-3.568,20.257)
C4': (-12.431,-5.369,21.649)
C2': (-13.657,-6.986,20.416)
O2': (-14.554,-7.507,21.375)
N1: (-15.772,-5.617,15.226)
N2: (-17.619,-6.583,16.214)
N3: (-15.861,-5.985,17.573)
N7: (-12.679,-4.479,16.852)
N9: (-13.810,-5.241,18.627)
O5': (-10.615,-4.353,20.454)
O3': (-11.846,-7.677,21.935)
Image (generated by PyMOL):