Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:01061:01206
Extra
PDB:
ATOM 1 O3' U A1060 18.640 105.467 123.826 1.00 40.72 O
ATOM 2 P C A1061 18.993 105.143 125.353 1.00 40.48 P
ATOM 3 OP1 C A1061 20.388 104.646 125.416 1.00 42.04 O
ATOM 4 OP2 C A1061 17.894 104.285 125.854 1.00 41.00 O
ATOM 5 O5' C A1061 18.954 106.569 126.064 1.00 35.94 O
ATOM 6 C5' C A1061 17.745 107.073 126.650 1.00 35.40 C
ATOM 7 C4' C A1061 17.908 108.527 127.021 1.00 35.14 C
ATOM 8 O4' C A1061 19.024 108.651 127.934 1.00 34.66 O
ATOM 9 C3' C A1061 18.259 109.468 125.879 1.00 36.49 C
ATOM 10 O3' C A1061 17.093 109.869 125.168 1.00 39.04 O
ATOM 11 C2' C A1061 18.938 110.618 126.611 1.00 35.67 C
ATOM 12 O2' C A1061 18.037 111.472 127.275 1.00 36.48 O
ATOM 13 C1' C A1061 19.721 109.863 127.682 1.00 35.28 C
ATOM 14 N1 C A1061 21.105 109.535 127.281 1.00 34.83 N
ATOM 15 C2 C A1061 22.051 110.563 127.201 1.00 35.42 C
ATOM 16 O2 C A1061 21.703 111.729 127.462 1.00 34.30 O
ATOM 17 N3 C A1061 23.320 110.260 126.844 1.00 36.09 N
ATOM 18 C4 C A1061 23.657 108.995 126.583 1.00 35.32 C
ATOM 19 N4 C A1061 24.921 108.737 126.252 1.00 35.23 N
ATOM 20 C5 C A1061 22.715 107.938 126.652 1.00 34.87 C
ATOM 21 C6 C A1061 21.464 108.247 126.998 1.00 34.78 C
ATOM 22 P C A1062 17.213 110.371 123.645 1.00 40.39 P
ATOM 23 OP1 C A1062 15.837 110.581 123.142 1.00 43.00 O
ATOM 24 OP2 C A1062 18.129 109.480 122.891 1.00 39.87 O
ATOM 25 O5' C A1062 17.895 111.799 123.790 1.00 39.39 O
TER
ATOM 1 O3' A B1205 22.332 104.274 133.356 1.00 42.95 O
ATOM 2 P A B1206 20.894 104.477 132.684 1.00 44.05 P
ATOM 3 OP1 A B1206 20.258 105.633 133.388 1.00 41.71 O
ATOM 4 OP2 A B1206 20.188 103.165 132.628 1.00 41.08 O
ATOM 5 O5' A B1206 21.261 104.934 131.197 1.00 42.34 O
ATOM 6 C5' A B1206 21.784 103.995 130.223 1.00 37.29 C
ATOM 7 C4' A B1206 23.103 104.485 129.665 1.00 36.18 C
ATOM 8 O4' A B1206 22.951 105.865 129.220 1.00 36.14 O
ATOM 9 C3' A B1206 24.283 104.489 130.636 1.00 35.48 C
ATOM 10 O3' A B1206 25.492 104.297 129.905 1.00 35.69 O
ATOM 11 C2' A B1206 24.267 105.921 131.159 1.00 34.89 C
ATOM 12 O2' A B1206 25.519 106.363 131.646 1.00 33.60 O
ATOM 13 C1' A B1206 23.881 106.687 129.895 1.00 34.88 C
ATOM 14 N9 A B1206 23.254 107.980 130.160 1.00 35.90 N
ATOM 15 C8 A B1206 21.968 108.238 130.574 1.00 36.43 C
ATOM 16 N7 A B1206 21.711 109.515 130.730 1.00 36.33 N
ATOM 17 C5 A B1206 22.904 110.139 130.394 1.00 37.29 C
ATOM 18 C6 A B1206 23.284 111.488 130.347 1.00 36.59 C
ATOM 19 N6 A B1206 22.476 112.496 130.669 1.00 37.46 N
ATOM 20 N1 A B1206 24.543 111.772 129.955 1.00 36.42 N
ATOM 21 C2 A B1206 25.359 110.763 129.646 1.00 36.93 C
ATOM 22 N3 A B1206 25.124 109.457 129.660 1.00 38.07 N
ATOM 23 C4 A B1206 23.862 109.206 130.043 1.00 36.79 C
ATOM 24 P A B1207 25.911 102.831 129.405 1.00 37.41 P
ATOM 25 OP1 A B1207 26.266 102.981 127.974 1.00 35.75 O
ATOM 26 OP2 A B1207 24.867 101.853 129.805 1.00 37.13 O
ATOM 27 O5' A B1207 27.243 102.504 130.214 1.00 37.65 O
TER
ATOM 2 P C A1061 18.993 105.143 125.353 1.00 40.48 P
ATOM 3 OP1 C A1061 20.388 104.646 125.416 1.00 42.04 O
ATOM 4 OP2 C A1061 17.894 104.285 125.854 1.00 41.00 O
ATOM 5 O5' C A1061 18.954 106.569 126.064 1.00 35.94 O
ATOM 6 C5' C A1061 17.745 107.073 126.650 1.00 35.40 C
ATOM 7 C4' C A1061 17.908 108.527 127.021 1.00 35.14 C
ATOM 8 O4' C A1061 19.024 108.651 127.934 1.00 34.66 O
ATOM 9 C3' C A1061 18.259 109.468 125.879 1.00 36.49 C
ATOM 10 O3' C A1061 17.093 109.869 125.168 1.00 39.04 O
ATOM 11 C2' C A1061 18.938 110.618 126.611 1.00 35.67 C
ATOM 12 O2' C A1061 18.037 111.472 127.275 1.00 36.48 O
ATOM 13 C1' C A1061 19.721 109.863 127.682 1.00 35.28 C
ATOM 14 N1 C A1061 21.105 109.535 127.281 1.00 34.83 N
ATOM 15 C2 C A1061 22.051 110.563 127.201 1.00 35.42 C
ATOM 16 O2 C A1061 21.703 111.729 127.462 1.00 34.30 O
ATOM 17 N3 C A1061 23.320 110.260 126.844 1.00 36.09 N
ATOM 18 C4 C A1061 23.657 108.995 126.583 1.00 35.32 C
ATOM 19 N4 C A1061 24.921 108.737 126.252 1.00 35.23 N
ATOM 20 C5 C A1061 22.715 107.938 126.652 1.00 34.87 C
ATOM 21 C6 C A1061 21.464 108.247 126.998 1.00 34.78 C
ATOM 22 P C A1062 17.213 110.371 123.645 1.00 40.39 P
ATOM 23 OP1 C A1062 15.837 110.581 123.142 1.00 43.00 O
ATOM 24 OP2 C A1062 18.129 109.480 122.891 1.00 39.87 O
ATOM 25 O5' C A1062 17.895 111.799 123.790 1.00 39.39 O
TER
ATOM 1 O3' A B1205 22.332 104.274 133.356 1.00 42.95 O
ATOM 2 P A B1206 20.894 104.477 132.684 1.00 44.05 P
ATOM 3 OP1 A B1206 20.258 105.633 133.388 1.00 41.71 O
ATOM 4 OP2 A B1206 20.188 103.165 132.628 1.00 41.08 O
ATOM 5 O5' A B1206 21.261 104.934 131.197 1.00 42.34 O
ATOM 6 C5' A B1206 21.784 103.995 130.223 1.00 37.29 C
ATOM 7 C4' A B1206 23.103 104.485 129.665 1.00 36.18 C
ATOM 8 O4' A B1206 22.951 105.865 129.220 1.00 36.14 O
ATOM 9 C3' A B1206 24.283 104.489 130.636 1.00 35.48 C
ATOM 10 O3' A B1206 25.492 104.297 129.905 1.00 35.69 O
ATOM 11 C2' A B1206 24.267 105.921 131.159 1.00 34.89 C
ATOM 12 O2' A B1206 25.519 106.363 131.646 1.00 33.60 O
ATOM 13 C1' A B1206 23.881 106.687 129.895 1.00 34.88 C
ATOM 14 N9 A B1206 23.254 107.980 130.160 1.00 35.90 N
ATOM 15 C8 A B1206 21.968 108.238 130.574 1.00 36.43 C
ATOM 16 N7 A B1206 21.711 109.515 130.730 1.00 36.33 N
ATOM 17 C5 A B1206 22.904 110.139 130.394 1.00 37.29 C
ATOM 18 C6 A B1206 23.284 111.488 130.347 1.00 36.59 C
ATOM 19 N6 A B1206 22.476 112.496 130.669 1.00 37.46 N
ATOM 20 N1 A B1206 24.543 111.772 129.955 1.00 36.42 N
ATOM 21 C2 A B1206 25.359 110.763 129.646 1.00 36.93 C
ATOM 22 N3 A B1206 25.124 109.457 129.660 1.00 38.07 N
ATOM 23 C4 A B1206 23.862 109.206 130.043 1.00 36.79 C
ATOM 24 P A B1207 25.911 102.831 129.405 1.00 37.41 P
ATOM 25 OP1 A B1207 26.266 102.981 127.974 1.00 35.75 O
ATOM 26 OP2 A B1207 24.867 101.853 129.805 1.00 37.13 O
ATOM 27 O5' A B1207 27.243 102.504 130.214 1.00 37.65 O
TER
Atoms:
C2: (22.051,110.563,127.201)
OP1: (20.388,104.646,125.416)
OP2: (17.894,104.285,125.854)
C4: (23.657,108.995,126.583)
O5': (18.954,106.569,126.064)
C3': (18.259,109.468,125.879)
C1': (19.721,109.863,127.682)
O4': (19.024,108.651,127.934)
C5': (17.745,107.073,126.650)
P: (18.993,105.143,125.353)
O2: (21.703,111.729,127.462)
C4': (17.908,108.527,127.021)
C2': (18.938,110.618,126.611)
O2': (18.037,111.472,127.275)
N1: (21.105,109.535,127.281)
N3: (23.320,110.260,126.844)
N4: (24.921,108.737,126.252)
C6: (21.464,108.247,126.998)
C5: (22.715,107.938,126.652)
O3': (17.093,109.869,125.168)
OP1: (20.388,104.646,125.416)
OP2: (17.894,104.285,125.854)
C4: (23.657,108.995,126.583)
O5': (18.954,106.569,126.064)
C3': (18.259,109.468,125.879)
C1': (19.721,109.863,127.682)
O4': (19.024,108.651,127.934)
C5': (17.745,107.073,126.650)
P: (18.993,105.143,125.353)
O2: (21.703,111.729,127.462)
C4': (17.908,108.527,127.021)
C2': (18.938,110.618,126.611)
O2': (18.037,111.472,127.275)
N1: (21.105,109.535,127.281)
N3: (23.320,110.260,126.844)
N4: (24.921,108.737,126.252)
C6: (21.464,108.247,126.998)
C5: (22.715,107.938,126.652)
O3': (17.093,109.869,125.168)
OP1: (20.258,105.633,133.388)
OP2: (20.188,103.165,132.628)
C3': (24.283,104.489,130.636)
C1': (23.881,106.687,129.895)
C5': (21.784,103.995,130.223)
O4': (22.951,105.865,129.220)
C8: (21.968,108.238,130.574)
O2': (25.519,106.363,131.646)
C6: (23.284,111.488,130.347)
C5: (22.904,110.139,130.394)
C4: (23.862,109.206,130.043)
P: (20.894,104.477,132.684)
C4': (23.103,104.485,129.665)
C2': (24.267,105.921,131.159)
C2: (25.359,110.763,129.646)
N1: (24.543,111.772,129.955)
N3: (25.124,109.457,129.660)
N6: (22.476,112.496,130.669)
N7: (21.711,109.515,130.730)
N9: (23.254,107.980,130.160)
O5': (21.261,104.934,131.197)
O3': (25.492,104.297,129.905)
OP2: (20.188,103.165,132.628)
C3': (24.283,104.489,130.636)
C1': (23.881,106.687,129.895)
C5': (21.784,103.995,130.223)
O4': (22.951,105.865,129.220)
C8: (21.968,108.238,130.574)
O2': (25.519,106.363,131.646)
C6: (23.284,111.488,130.347)
C5: (22.904,110.139,130.394)
C4: (23.862,109.206,130.043)
P: (20.894,104.477,132.684)
C4': (23.103,104.485,129.665)
C2': (24.267,105.921,131.159)
C2: (25.359,110.763,129.646)
N1: (24.543,111.772,129.955)
N3: (25.124,109.457,129.660)
N6: (22.476,112.496,130.669)
N7: (21.711,109.515,130.730)
N9: (23.254,107.980,130.160)
O5': (21.261,104.934,131.197)
O3': (25.492,104.297,129.905)
Image (generated by PyMOL):