Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DDY:E10:E14
Extra
PDB:
ATOM 1 O3' G A 9 -17.952 -10.935 20.744 1.00 15.10 O
ATOM 2 P C A 10 -16.659 -10.480 19.931 1.00 18.60 P
ATOM 3 OP1 C A 10 -15.706 -9.870 20.899 1.00 22.53 O
ATOM 4 OP2 C A 10 -17.150 -9.688 18.767 1.00 16.53 O
ATOM 5 O5' C A 10 -15.990 -11.836 19.437 1.00 16.87 O
ATOM 6 C5' C A 10 -14.738 -12.247 19.970 1.00 16.29 C
ATOM 7 C4' C A 10 -14.921 -13.475 20.823 1.00 16.02 C
ATOM 8 O4' C A 10 -15.281 -14.607 20.031 1.00 15.77 O
ATOM 9 C3' C A 10 -13.700 -13.924 21.616 1.00 16.17 C
ATOM 10 O3' C A 10 -13.869 -13.505 22.962 1.00 19.26 O
ATOM 11 C2' C A 10 -13.703 -15.455 21.459 1.00 15.58 C
ATOM 12 O2' C A 10 -13.607 -16.120 22.698 1.00 16.15 O
ATOM 13 C1' C A 10 -15.050 -15.746 20.806 1.00 15.85 C
ATOM 14 N1 C A 10 -15.011 -16.885 19.885 1.00 17.69 N
ATOM 15 C2 C A 10 -15.523 -18.119 20.292 1.00 19.71 C
ATOM 16 O2 C A 10 -15.947 -18.241 21.443 1.00 22.34 O
ATOM 17 N3 C A 10 -15.545 -19.141 19.421 1.00 20.13 N
ATOM 18 C4 C A 10 -15.080 -18.965 18.184 1.00 20.90 C
ATOM 19 N4 C A 10 -15.141 -19.992 17.338 1.00 22.54 N
ATOM 20 C5 C A 10 -14.532 -17.727 17.753 1.00 20.85 C
ATOM 21 C6 C A 10 -14.506 -16.729 18.631 1.00 18.47 C
ATOM 22 P G A 11 -13.306 -12.074 23.428 1.00 19.32 P
ATOM 23 OP1 G A 11 -13.792 -11.942 24.826 1.00 23.46 O
ATOM 24 OP2 G A 11 -13.648 -11.040 22.415 1.00 20.00 O
ATOM 25 O5' G A 11 -11.725 -12.239 23.443 1.00 15.48 O
TER
ATOM 1 O3' A B 13 -11.191 -15.608 17.268 1.00 17.67 O
ATOM 2 P U B 14 -11.746 -14.153 16.919 1.00 22.87 P
ATOM 3 OP1 U B 14 -10.836 -13.527 15.922 1.00 21.75 O
ATOM 4 OP2 U B 14 -12.001 -13.474 18.213 1.00 24.29 O
ATOM 5 O5' U B 14 -13.146 -14.457 16.211 1.00 22.30 O
ATOM 6 C5' U B 14 -13.199 -15.021 14.901 1.00 18.39 C
ATOM 7 C4' U B 14 -14.610 -14.974 14.351 1.00 18.47 C
ATOM 8 O4' U B 14 -15.450 -15.932 15.052 1.00 20.31 O
ATOM 9 C3' U B 14 -15.336 -13.639 14.474 1.00 17.35 C
ATOM 10 O3' U B 14 -16.222 -13.531 13.380 1.00 16.51 O
ATOM 11 C2' U B 14 -16.247 -13.875 15.670 1.00 18.01 C
ATOM 12 O2' U B 14 -17.364 -13.017 15.650 1.00 20.85 O
ATOM 13 C1' U B 14 -16.671 -15.309 15.381 1.00 17.97 C
ATOM 14 N1 U B 14 -17.324 -16.086 16.446 1.00 17.87 N
ATOM 15 C2 U B 14 -18.039 -17.200 16.055 1.00 19.73 C
ATOM 16 O2 U B 14 -18.186 -17.512 14.879 1.00 21.64 O
ATOM 17 N3 U B 14 -18.582 -17.932 17.080 1.00 19.82 N
ATOM 18 C4 U B 14 -18.497 -17.659 18.428 1.00 17.89 C
ATOM 19 O4 U B 14 -19.037 -18.415 19.235 1.00 18.08 O
ATOM 20 C5 U B 14 -17.770 -16.474 18.750 1.00 16.30 C
ATOM 21 C6 U B 14 -17.222 -15.744 17.771 1.00 16.22 C
ATOM 22 P A B 15 -15.743 -12.849 12.014 1.00 22.00 P
ATOM 23 OP1 A B 15 -14.289 -13.146 11.857 1.00 20.58 O
ATOM 24 OP2 A B 15 -16.216 -11.433 12.025 1.00 19.04 O
ATOM 25 O5' A B 15 -16.559 -13.649 10.893 1.00 20.14 O
TER
ATOM 2 P C A 10 -16.659 -10.480 19.931 1.00 18.60 P
ATOM 3 OP1 C A 10 -15.706 -9.870 20.899 1.00 22.53 O
ATOM 4 OP2 C A 10 -17.150 -9.688 18.767 1.00 16.53 O
ATOM 5 O5' C A 10 -15.990 -11.836 19.437 1.00 16.87 O
ATOM 6 C5' C A 10 -14.738 -12.247 19.970 1.00 16.29 C
ATOM 7 C4' C A 10 -14.921 -13.475 20.823 1.00 16.02 C
ATOM 8 O4' C A 10 -15.281 -14.607 20.031 1.00 15.77 O
ATOM 9 C3' C A 10 -13.700 -13.924 21.616 1.00 16.17 C
ATOM 10 O3' C A 10 -13.869 -13.505 22.962 1.00 19.26 O
ATOM 11 C2' C A 10 -13.703 -15.455 21.459 1.00 15.58 C
ATOM 12 O2' C A 10 -13.607 -16.120 22.698 1.00 16.15 O
ATOM 13 C1' C A 10 -15.050 -15.746 20.806 1.00 15.85 C
ATOM 14 N1 C A 10 -15.011 -16.885 19.885 1.00 17.69 N
ATOM 15 C2 C A 10 -15.523 -18.119 20.292 1.00 19.71 C
ATOM 16 O2 C A 10 -15.947 -18.241 21.443 1.00 22.34 O
ATOM 17 N3 C A 10 -15.545 -19.141 19.421 1.00 20.13 N
ATOM 18 C4 C A 10 -15.080 -18.965 18.184 1.00 20.90 C
ATOM 19 N4 C A 10 -15.141 -19.992 17.338 1.00 22.54 N
ATOM 20 C5 C A 10 -14.532 -17.727 17.753 1.00 20.85 C
ATOM 21 C6 C A 10 -14.506 -16.729 18.631 1.00 18.47 C
ATOM 22 P G A 11 -13.306 -12.074 23.428 1.00 19.32 P
ATOM 23 OP1 G A 11 -13.792 -11.942 24.826 1.00 23.46 O
ATOM 24 OP2 G A 11 -13.648 -11.040 22.415 1.00 20.00 O
ATOM 25 O5' G A 11 -11.725 -12.239 23.443 1.00 15.48 O
TER
ATOM 1 O3' A B 13 -11.191 -15.608 17.268 1.00 17.67 O
ATOM 2 P U B 14 -11.746 -14.153 16.919 1.00 22.87 P
ATOM 3 OP1 U B 14 -10.836 -13.527 15.922 1.00 21.75 O
ATOM 4 OP2 U B 14 -12.001 -13.474 18.213 1.00 24.29 O
ATOM 5 O5' U B 14 -13.146 -14.457 16.211 1.00 22.30 O
ATOM 6 C5' U B 14 -13.199 -15.021 14.901 1.00 18.39 C
ATOM 7 C4' U B 14 -14.610 -14.974 14.351 1.00 18.47 C
ATOM 8 O4' U B 14 -15.450 -15.932 15.052 1.00 20.31 O
ATOM 9 C3' U B 14 -15.336 -13.639 14.474 1.00 17.35 C
ATOM 10 O3' U B 14 -16.222 -13.531 13.380 1.00 16.51 O
ATOM 11 C2' U B 14 -16.247 -13.875 15.670 1.00 18.01 C
ATOM 12 O2' U B 14 -17.364 -13.017 15.650 1.00 20.85 O
ATOM 13 C1' U B 14 -16.671 -15.309 15.381 1.00 17.97 C
ATOM 14 N1 U B 14 -17.324 -16.086 16.446 1.00 17.87 N
ATOM 15 C2 U B 14 -18.039 -17.200 16.055 1.00 19.73 C
ATOM 16 O2 U B 14 -18.186 -17.512 14.879 1.00 21.64 O
ATOM 17 N3 U B 14 -18.582 -17.932 17.080 1.00 19.82 N
ATOM 18 C4 U B 14 -18.497 -17.659 18.428 1.00 17.89 C
ATOM 19 O4 U B 14 -19.037 -18.415 19.235 1.00 18.08 O
ATOM 20 C5 U B 14 -17.770 -16.474 18.750 1.00 16.30 C
ATOM 21 C6 U B 14 -17.222 -15.744 17.771 1.00 16.22 C
ATOM 22 P A B 15 -15.743 -12.849 12.014 1.00 22.00 P
ATOM 23 OP1 A B 15 -14.289 -13.146 11.857 1.00 20.58 O
ATOM 24 OP2 A B 15 -16.216 -11.433 12.025 1.00 19.04 O
ATOM 25 O5' A B 15 -16.559 -13.649 10.893 1.00 20.14 O
TER
Atoms:
C2: (-15.523,-18.119,20.292)
OP1: (-15.706,-9.870,20.899)
OP2: (-17.150,-9.688,18.767)
C4: (-15.080,-18.965,18.184)
O5': (-15.990,-11.836,19.437)
C3': (-13.700,-13.924,21.616)
C1': (-15.050,-15.746,20.806)
O4': (-15.281,-14.607,20.031)
C5': (-14.738,-12.247,19.970)
P: (-16.659,-10.480,19.931)
O2: (-15.947,-18.241,21.443)
C4': (-14.921,-13.475,20.823)
C2': (-13.703,-15.455,21.459)
O2': (-13.607,-16.120,22.698)
N1: (-15.011,-16.885,19.885)
N3: (-15.545,-19.141,19.421)
N4: (-15.141,-19.992,17.338)
C6: (-14.506,-16.729,18.631)
C5: (-14.532,-17.727,17.753)
O3': (-13.869,-13.505,22.962)
OP1: (-15.706,-9.870,20.899)
OP2: (-17.150,-9.688,18.767)
C4: (-15.080,-18.965,18.184)
O5': (-15.990,-11.836,19.437)
C3': (-13.700,-13.924,21.616)
C1': (-15.050,-15.746,20.806)
O4': (-15.281,-14.607,20.031)
C5': (-14.738,-12.247,19.970)
P: (-16.659,-10.480,19.931)
O2: (-15.947,-18.241,21.443)
C4': (-14.921,-13.475,20.823)
C2': (-13.703,-15.455,21.459)
O2': (-13.607,-16.120,22.698)
N1: (-15.011,-16.885,19.885)
N3: (-15.545,-19.141,19.421)
N4: (-15.141,-19.992,17.338)
C6: (-14.506,-16.729,18.631)
C5: (-14.532,-17.727,17.753)
O3': (-13.869,-13.505,22.962)
C4: (-18.497,-17.659,18.428)
N3: (-18.582,-17.932,17.080)
OP1: (-10.836,-13.527,15.922)
OP2: (-12.001,-13.474,18.213)
C2: (-18.039,-17.200,16.055)
C1': (-16.671,-15.309,15.381)
C3': (-15.336,-13.639,14.474)
O5': (-13.146,-14.457,16.211)
O4': (-15.450,-15.932,15.052)
C5': (-13.199,-15.021,14.901)
P: (-11.746,-14.153,16.919)
C4': (-14.610,-14.974,14.351)
C2': (-16.247,-13.875,15.670)
O2': (-17.364,-13.017,15.650)
N1: (-17.324,-16.086,16.446)
O4: (-19.037,-18.415,19.235)
O2: (-18.186,-17.512,14.879)
C6: (-17.222,-15.744,17.771)
C5: (-17.770,-16.474,18.750)
O3': (-16.222,-13.531,13.380)
N3: (-18.582,-17.932,17.080)
OP1: (-10.836,-13.527,15.922)
OP2: (-12.001,-13.474,18.213)
C2: (-18.039,-17.200,16.055)
C1': (-16.671,-15.309,15.381)
C3': (-15.336,-13.639,14.474)
O5': (-13.146,-14.457,16.211)
O4': (-15.450,-15.932,15.052)
C5': (-13.199,-15.021,14.901)
P: (-11.746,-14.153,16.919)
C4': (-14.610,-14.974,14.351)
C2': (-16.247,-13.875,15.670)
O2': (-17.364,-13.017,15.650)
N1: (-17.324,-16.086,16.446)
O4: (-19.037,-18.415,19.235)
O2: (-18.186,-17.512,14.879)
C6: (-17.222,-15.744,17.771)
C5: (-17.770,-16.474,18.750)
O3': (-16.222,-13.531,13.380)
Image (generated by PyMOL):