Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DDY:G10:G14
Extra
PDB:
ATOM 1 O3' G A 9 -1.130 -46.273 1.352 1.00 20.44 O
ATOM 2 P C A 10 -1.713 -46.996 2.650 1.00 27.35 P
ATOM 3 OP1 C A 10 -0.554 -47.528 3.425 1.00 26.28 O
ATOM 4 OP2 C A 10 -2.813 -47.910 2.228 1.00 26.56 O
ATOM 5 O5' C A 10 -2.383 -45.802 3.459 1.00 28.21 O
ATOM 6 C5' C A 10 -2.118 -45.618 4.841 1.00 25.82 C
ATOM 7 C4' C A 10 -1.290 -44.375 5.047 1.00 25.21 C
ATOM 8 O4' C A 10 -1.993 -43.203 4.586 1.00 24.46 O
ATOM 9 C3' C A 10 -0.983 -44.055 6.498 1.00 25.05 C
ATOM 10 O3' C A 10 0.178 -44.792 6.839 1.00 25.76 O
ATOM 11 C2' C A 10 -0.629 -42.570 6.447 1.00 23.88 C
ATOM 12 O2' C A 10 0.741 -42.411 6.165 1.00 25.63 O
ATOM 13 C1' C A 10 -1.431 -42.083 5.233 1.00 23.66 C
ATOM 14 N1 C A 10 -2.468 -41.067 5.429 1.00 23.25 N
ATOM 15 C2 C A 10 -2.207 -39.779 4.961 1.00 22.50 C
ATOM 16 O2 C A 10 -1.082 -39.530 4.513 1.00 21.39 O
ATOM 17 N3 C A 10 -3.174 -38.843 5.009 1.00 21.25 N
ATOM 18 C4 C A 10 -4.363 -39.147 5.526 1.00 22.19 C
ATOM 19 N4 C A 10 -5.309 -38.194 5.503 1.00 21.21 N
ATOM 20 C5 C A 10 -4.641 -40.443 6.076 1.00 22.17 C
ATOM 21 C6 C A 10 -3.670 -41.363 6.009 1.00 21.04 C
ATOM 22 P G A 11 0.046 -46.302 7.353 1.00 26.50 P
ATOM 23 OP1 G A 11 0.626 -47.166 6.288 1.00 25.93 O
ATOM 24 OP2 G A 11 -1.364 -46.514 7.786 1.00 24.10 O
ATOM 25 O5' G A 11 1.023 -46.301 8.619 1.00 25.59 O
TER
ATOM 1 O3' A B 13 -4.672 -42.811 8.904 1.00 20.87 O
ATOM 2 P U B 14 -5.273 -44.213 8.414 1.00 20.94 P
ATOM 3 OP1 U B 14 -6.326 -44.625 9.381 1.00 22.77 O
ATOM 4 OP2 U B 14 -4.119 -45.118 8.151 1.00 20.15 O
ATOM 5 O5' U B 14 -6.014 -43.834 7.057 1.00 19.42 O
ATOM 6 C5' U B 14 -7.351 -43.342 7.076 1.00 17.40 C
ATOM 7 C4' U B 14 -7.900 -43.260 5.672 1.00 18.07 C
ATOM 8 O4' U B 14 -7.319 -42.117 4.978 1.00 18.22 O
ATOM 9 C3' U B 14 -7.597 -44.465 4.786 1.00 17.98 C
ATOM 10 O3' U B 14 -8.670 -44.626 3.870 1.00 17.04 O
ATOM 11 C2' U B 14 -6.400 -43.975 3.980 1.00 18.22 C
ATOM 12 O2' U B 14 -6.193 -44.691 2.779 1.00 17.76 O
ATOM 13 C1' U B 14 -6.864 -42.547 3.715 1.00 18.13 C
ATOM 14 N1 U B 14 -5.923 -41.562 3.155 1.00 17.19 N
ATOM 15 C2 U B 14 -6.478 -40.422 2.607 1.00 16.58 C
ATOM 16 O2 U B 14 -7.688 -40.220 2.585 1.00 18.52 O
ATOM 17 N3 U B 14 -5.574 -39.535 2.077 1.00 12.52 N
ATOM 18 C4 U B 14 -4.204 -39.671 2.029 1.00 10.78 C
ATOM 19 O4 U B 14 -3.537 -38.809 1.467 1.00 8.31 O
ATOM 20 C5 U B 14 -3.698 -40.874 2.613 1.00 11.57 C
ATOM 21 C6 U B 14 -4.552 -41.757 3.150 1.00 16.14 C
ATOM 22 P A B 15 -10.049 -45.278 4.356 1.00 20.50 P
ATOM 23 OP1 A B 15 -9.884 -45.678 5.777 1.00 20.19 O
ATOM 24 OP2 A B 15 -10.430 -46.297 3.342 1.00 20.68 O
ATOM 25 O5' A B 15 -11.103 -44.081 4.283 1.00 18.89 O
TER
ATOM 2 P C A 10 -1.713 -46.996 2.650 1.00 27.35 P
ATOM 3 OP1 C A 10 -0.554 -47.528 3.425 1.00 26.28 O
ATOM 4 OP2 C A 10 -2.813 -47.910 2.228 1.00 26.56 O
ATOM 5 O5' C A 10 -2.383 -45.802 3.459 1.00 28.21 O
ATOM 6 C5' C A 10 -2.118 -45.618 4.841 1.00 25.82 C
ATOM 7 C4' C A 10 -1.290 -44.375 5.047 1.00 25.21 C
ATOM 8 O4' C A 10 -1.993 -43.203 4.586 1.00 24.46 O
ATOM 9 C3' C A 10 -0.983 -44.055 6.498 1.00 25.05 C
ATOM 10 O3' C A 10 0.178 -44.792 6.839 1.00 25.76 O
ATOM 11 C2' C A 10 -0.629 -42.570 6.447 1.00 23.88 C
ATOM 12 O2' C A 10 0.741 -42.411 6.165 1.00 25.63 O
ATOM 13 C1' C A 10 -1.431 -42.083 5.233 1.00 23.66 C
ATOM 14 N1 C A 10 -2.468 -41.067 5.429 1.00 23.25 N
ATOM 15 C2 C A 10 -2.207 -39.779 4.961 1.00 22.50 C
ATOM 16 O2 C A 10 -1.082 -39.530 4.513 1.00 21.39 O
ATOM 17 N3 C A 10 -3.174 -38.843 5.009 1.00 21.25 N
ATOM 18 C4 C A 10 -4.363 -39.147 5.526 1.00 22.19 C
ATOM 19 N4 C A 10 -5.309 -38.194 5.503 1.00 21.21 N
ATOM 20 C5 C A 10 -4.641 -40.443 6.076 1.00 22.17 C
ATOM 21 C6 C A 10 -3.670 -41.363 6.009 1.00 21.04 C
ATOM 22 P G A 11 0.046 -46.302 7.353 1.00 26.50 P
ATOM 23 OP1 G A 11 0.626 -47.166 6.288 1.00 25.93 O
ATOM 24 OP2 G A 11 -1.364 -46.514 7.786 1.00 24.10 O
ATOM 25 O5' G A 11 1.023 -46.301 8.619 1.00 25.59 O
TER
ATOM 1 O3' A B 13 -4.672 -42.811 8.904 1.00 20.87 O
ATOM 2 P U B 14 -5.273 -44.213 8.414 1.00 20.94 P
ATOM 3 OP1 U B 14 -6.326 -44.625 9.381 1.00 22.77 O
ATOM 4 OP2 U B 14 -4.119 -45.118 8.151 1.00 20.15 O
ATOM 5 O5' U B 14 -6.014 -43.834 7.057 1.00 19.42 O
ATOM 6 C5' U B 14 -7.351 -43.342 7.076 1.00 17.40 C
ATOM 7 C4' U B 14 -7.900 -43.260 5.672 1.00 18.07 C
ATOM 8 O4' U B 14 -7.319 -42.117 4.978 1.00 18.22 O
ATOM 9 C3' U B 14 -7.597 -44.465 4.786 1.00 17.98 C
ATOM 10 O3' U B 14 -8.670 -44.626 3.870 1.00 17.04 O
ATOM 11 C2' U B 14 -6.400 -43.975 3.980 1.00 18.22 C
ATOM 12 O2' U B 14 -6.193 -44.691 2.779 1.00 17.76 O
ATOM 13 C1' U B 14 -6.864 -42.547 3.715 1.00 18.13 C
ATOM 14 N1 U B 14 -5.923 -41.562 3.155 1.00 17.19 N
ATOM 15 C2 U B 14 -6.478 -40.422 2.607 1.00 16.58 C
ATOM 16 O2 U B 14 -7.688 -40.220 2.585 1.00 18.52 O
ATOM 17 N3 U B 14 -5.574 -39.535 2.077 1.00 12.52 N
ATOM 18 C4 U B 14 -4.204 -39.671 2.029 1.00 10.78 C
ATOM 19 O4 U B 14 -3.537 -38.809 1.467 1.00 8.31 O
ATOM 20 C5 U B 14 -3.698 -40.874 2.613 1.00 11.57 C
ATOM 21 C6 U B 14 -4.552 -41.757 3.150 1.00 16.14 C
ATOM 22 P A B 15 -10.049 -45.278 4.356 1.00 20.50 P
ATOM 23 OP1 A B 15 -9.884 -45.678 5.777 1.00 20.19 O
ATOM 24 OP2 A B 15 -10.430 -46.297 3.342 1.00 20.68 O
ATOM 25 O5' A B 15 -11.103 -44.081 4.283 1.00 18.89 O
TER
Atoms:
C2: (-2.207,-39.779,4.961)
OP1: (-0.554,-47.528,3.425)
OP2: (-2.813,-47.910,2.228)
C4: (-4.363,-39.147,5.526)
O5': (-2.383,-45.802,3.459)
C3': (-0.983,-44.055,6.498)
C1': (-1.431,-42.083,5.233)
O4': (-1.993,-43.203,4.586)
C5': (-2.118,-45.618,4.841)
P: (-1.713,-46.996,2.650)
O2: (-1.082,-39.530,4.513)
C4': (-1.290,-44.375,5.047)
C2': (-0.629,-42.570,6.447)
O2': (0.741,-42.411,6.165)
N1: (-2.468,-41.067,5.429)
N3: (-3.174,-38.843,5.009)
N4: (-5.309,-38.194,5.503)
C6: (-3.670,-41.363,6.009)
C5: (-4.641,-40.443,6.076)
O3': (0.178,-44.792,6.839)
OP1: (-0.554,-47.528,3.425)
OP2: (-2.813,-47.910,2.228)
C4: (-4.363,-39.147,5.526)
O5': (-2.383,-45.802,3.459)
C3': (-0.983,-44.055,6.498)
C1': (-1.431,-42.083,5.233)
O4': (-1.993,-43.203,4.586)
C5': (-2.118,-45.618,4.841)
P: (-1.713,-46.996,2.650)
O2: (-1.082,-39.530,4.513)
C4': (-1.290,-44.375,5.047)
C2': (-0.629,-42.570,6.447)
O2': (0.741,-42.411,6.165)
N1: (-2.468,-41.067,5.429)
N3: (-3.174,-38.843,5.009)
N4: (-5.309,-38.194,5.503)
C6: (-3.670,-41.363,6.009)
C5: (-4.641,-40.443,6.076)
O3': (0.178,-44.792,6.839)
C4: (-4.204,-39.671,2.029)
N3: (-5.574,-39.535,2.077)
OP1: (-6.326,-44.625,9.381)
OP2: (-4.119,-45.118,8.151)
C2: (-6.478,-40.422,2.607)
C1': (-6.864,-42.547,3.715)
C3': (-7.597,-44.465,4.786)
O5': (-6.014,-43.834,7.057)
O4': (-7.319,-42.117,4.978)
C5': (-7.351,-43.342,7.076)
P: (-5.273,-44.213,8.414)
C4': (-7.900,-43.260,5.672)
C2': (-6.400,-43.975,3.980)
O2': (-6.193,-44.691,2.779)
N1: (-5.923,-41.562,3.155)
O4: (-3.537,-38.809,1.467)
O2: (-7.688,-40.220,2.585)
C6: (-4.552,-41.757,3.150)
C5: (-3.698,-40.874,2.613)
O3': (-8.670,-44.626,3.870)
N3: (-5.574,-39.535,2.077)
OP1: (-6.326,-44.625,9.381)
OP2: (-4.119,-45.118,8.151)
C2: (-6.478,-40.422,2.607)
C1': (-6.864,-42.547,3.715)
C3': (-7.597,-44.465,4.786)
O5': (-6.014,-43.834,7.057)
O4': (-7.319,-42.117,4.978)
C5': (-7.351,-43.342,7.076)
P: (-5.273,-44.213,8.414)
C4': (-7.900,-43.260,5.672)
C2': (-6.400,-43.975,3.980)
O2': (-6.193,-44.691,2.779)
N1: (-5.923,-41.562,3.155)
O4: (-3.537,-38.809,1.467)
O2: (-7.688,-40.220,2.585)
C6: (-4.552,-41.757,3.150)
C5: (-3.698,-40.874,2.613)
O3': (-8.670,-44.626,3.870)
Image (generated by PyMOL):