Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A946:A2259
Extra
PDB:
ATOM 1 O3' G A 945 -120.080 -71.177 4.549 1.00 0.01 O
ATOM 2 P G A 946 -119.831 -69.865 3.698 1.00 0.01 P
ATOM 3 OP1 G A 946 -121.008 -69.012 3.863 1.00 0.01 O
ATOM 4 OP2 G A 946 -119.464 -70.307 2.341 1.00 0.01 O
ATOM 5 O5' G A 946 -118.580 -69.186 4.423 1.00 0.01 O
ATOM 6 C5' G A 946 -118.195 -67.839 4.138 1.00 0.01 C
ATOM 7 C4' G A 946 -117.768 -67.104 5.387 1.00 0.01 C
ATOM 8 O4' G A 946 -117.009 -67.989 6.241 1.00 0.01 O
ATOM 9 C3' G A 946 -116.829 -65.922 5.212 1.00 0.01 C
ATOM 10 O3' G A 946 -117.463 -64.751 4.771 1.00 0.01 O
ATOM 11 C2' G A 946 -116.250 -65.787 6.596 1.00 0.01 C
ATOM 12 O2' G A 946 -117.196 -65.224 7.480 1.00 0.01 O
ATOM 13 C1' G A 946 -116.051 -67.243 6.966 1.00 0.01 C
ATOM 14 N9 G A 946 -114.705 -67.696 6.589 1.00 0.01 N
ATOM 15 C8 G A 946 -114.344 -68.576 5.609 1.00 0.01 C
ATOM 16 N7 G A 946 -113.044 -68.734 5.500 1.00 0.01 N
ATOM 17 C5 G A 946 -112.512 -67.882 6.455 1.00 0.01 C
ATOM 18 C6 G A 946 -111.175 -67.625 6.798 1.00 0.01 C
ATOM 19 O6 G A 946 -110.180 -68.112 6.298 1.00 0.01 O
ATOM 20 N1 G A 946 -111.078 -66.702 7.806 1.00 0.01 N
ATOM 21 C2 G A 946 -112.143 -66.102 8.402 1.00 0.01 C
ATOM 22 N2 G A 946 -111.895 -65.229 9.385 1.00 0.01 N
ATOM 23 N3 G A 946 -113.395 -66.333 8.099 1.00 0.01 N
ATOM 24 C4 G A 946 -113.519 -67.231 7.119 1.00 0.01 C
ATOM 25 P G A 947 -116.622 -63.613 4.022 1.00 0.01 P
ATOM 26 OP1 G A 947 -117.587 -62.707 3.433 1.00 0.01 O
ATOM 27 OP2 G A 947 -115.655 -64.276 3.139 1.00 0.01 O
ATOM 28 O5' G A 947 -115.850 -62.902 5.193 1.00 0.01 O
TER
ATOM 1 O3' U B2258 -118.969 -64.036 9.766 1.00 0.01 O
ATOM 2 P A B2259 -118.558 -65.454 10.309 1.00 0.01 P
ATOM 3 OP1 A B2259 -117.204 -65.347 10.839 1.00 0.01 O
ATOM 4 OP2 A B2259 -118.825 -66.420 9.239 1.00 0.01 O
ATOM 5 O5' A B2259 -119.569 -65.673 11.480 1.00 0.01 O
ATOM 6 C5' A B2259 -120.053 -66.957 11.778 1.00 0.01 C
ATOM 7 C4' A B2259 -120.435 -67.035 13.202 1.00 0.01 C
ATOM 8 O4' A B2259 -119.315 -66.599 13.995 1.00 0.01 O
ATOM 9 C3' A B2259 -121.597 -66.151 13.595 1.00 0.01 C
ATOM 10 O3' A B2259 -122.365 -66.811 14.565 1.00 0.01 O
ATOM 11 C2' A B2259 -120.946 -64.953 14.244 1.00 0.01 C
ATOM 12 O2' A B2259 -121.763 -64.364 15.227 1.00 0.01 O
ATOM 13 C1' A B2259 -119.712 -65.576 14.867 1.00 0.01 C
ATOM 14 N9 A B2259 -118.561 -64.677 15.059 1.00 0.01 N
ATOM 15 C8 A B2259 -117.480 -64.439 14.234 1.00 0.01 C
ATOM 16 N7 A B2259 -116.555 -63.647 14.725 1.00 0.01 N
ATOM 17 C5 A B2259 -117.038 -63.361 15.977 1.00 0.01 C
ATOM 18 C6 A B2259 -116.526 -62.607 17.020 1.00 0.01 C
ATOM 19 N6 A B2259 -115.392 -61.936 17.005 1.00 0.01 N
ATOM 20 N1 A B2259 -117.224 -62.526 18.135 1.00 0.01 N
ATOM 21 C2 A B2259 -118.373 -63.188 18.190 1.00 0.01 C
ATOM 22 N3 A B2259 -118.969 -63.947 17.295 1.00 0.01 N
ATOM 23 C4 A B2259 -118.234 -63.997 16.197 1.00 0.01 C
ATOM 24 P A B2260 -123.693 -67.529 14.143 1.00 0.01 P
ATOM 25 OP1 A B2260 -124.396 -66.637 13.227 1.00 0.01 O
ATOM 26 OP2 A B2260 -124.347 -67.951 15.361 1.00 0.01 O
ATOM 27 O5' A B2260 -123.187 -68.767 13.349 1.00 0.01 O
TER
ATOM 2 P G A 946 -119.831 -69.865 3.698 1.00 0.01 P
ATOM 3 OP1 G A 946 -121.008 -69.012 3.863 1.00 0.01 O
ATOM 4 OP2 G A 946 -119.464 -70.307 2.341 1.00 0.01 O
ATOM 5 O5' G A 946 -118.580 -69.186 4.423 1.00 0.01 O
ATOM 6 C5' G A 946 -118.195 -67.839 4.138 1.00 0.01 C
ATOM 7 C4' G A 946 -117.768 -67.104 5.387 1.00 0.01 C
ATOM 8 O4' G A 946 -117.009 -67.989 6.241 1.00 0.01 O
ATOM 9 C3' G A 946 -116.829 -65.922 5.212 1.00 0.01 C
ATOM 10 O3' G A 946 -117.463 -64.751 4.771 1.00 0.01 O
ATOM 11 C2' G A 946 -116.250 -65.787 6.596 1.00 0.01 C
ATOM 12 O2' G A 946 -117.196 -65.224 7.480 1.00 0.01 O
ATOM 13 C1' G A 946 -116.051 -67.243 6.966 1.00 0.01 C
ATOM 14 N9 G A 946 -114.705 -67.696 6.589 1.00 0.01 N
ATOM 15 C8 G A 946 -114.344 -68.576 5.609 1.00 0.01 C
ATOM 16 N7 G A 946 -113.044 -68.734 5.500 1.00 0.01 N
ATOM 17 C5 G A 946 -112.512 -67.882 6.455 1.00 0.01 C
ATOM 18 C6 G A 946 -111.175 -67.625 6.798 1.00 0.01 C
ATOM 19 O6 G A 946 -110.180 -68.112 6.298 1.00 0.01 O
ATOM 20 N1 G A 946 -111.078 -66.702 7.806 1.00 0.01 N
ATOM 21 C2 G A 946 -112.143 -66.102 8.402 1.00 0.01 C
ATOM 22 N2 G A 946 -111.895 -65.229 9.385 1.00 0.01 N
ATOM 23 N3 G A 946 -113.395 -66.333 8.099 1.00 0.01 N
ATOM 24 C4 G A 946 -113.519 -67.231 7.119 1.00 0.01 C
ATOM 25 P G A 947 -116.622 -63.613 4.022 1.00 0.01 P
ATOM 26 OP1 G A 947 -117.587 -62.707 3.433 1.00 0.01 O
ATOM 27 OP2 G A 947 -115.655 -64.276 3.139 1.00 0.01 O
ATOM 28 O5' G A 947 -115.850 -62.902 5.193 1.00 0.01 O
TER
ATOM 1 O3' U B2258 -118.969 -64.036 9.766 1.00 0.01 O
ATOM 2 P A B2259 -118.558 -65.454 10.309 1.00 0.01 P
ATOM 3 OP1 A B2259 -117.204 -65.347 10.839 1.00 0.01 O
ATOM 4 OP2 A B2259 -118.825 -66.420 9.239 1.00 0.01 O
ATOM 5 O5' A B2259 -119.569 -65.673 11.480 1.00 0.01 O
ATOM 6 C5' A B2259 -120.053 -66.957 11.778 1.00 0.01 C
ATOM 7 C4' A B2259 -120.435 -67.035 13.202 1.00 0.01 C
ATOM 8 O4' A B2259 -119.315 -66.599 13.995 1.00 0.01 O
ATOM 9 C3' A B2259 -121.597 -66.151 13.595 1.00 0.01 C
ATOM 10 O3' A B2259 -122.365 -66.811 14.565 1.00 0.01 O
ATOM 11 C2' A B2259 -120.946 -64.953 14.244 1.00 0.01 C
ATOM 12 O2' A B2259 -121.763 -64.364 15.227 1.00 0.01 O
ATOM 13 C1' A B2259 -119.712 -65.576 14.867 1.00 0.01 C
ATOM 14 N9 A B2259 -118.561 -64.677 15.059 1.00 0.01 N
ATOM 15 C8 A B2259 -117.480 -64.439 14.234 1.00 0.01 C
ATOM 16 N7 A B2259 -116.555 -63.647 14.725 1.00 0.01 N
ATOM 17 C5 A B2259 -117.038 -63.361 15.977 1.00 0.01 C
ATOM 18 C6 A B2259 -116.526 -62.607 17.020 1.00 0.01 C
ATOM 19 N6 A B2259 -115.392 -61.936 17.005 1.00 0.01 N
ATOM 20 N1 A B2259 -117.224 -62.526 18.135 1.00 0.01 N
ATOM 21 C2 A B2259 -118.373 -63.188 18.190 1.00 0.01 C
ATOM 22 N3 A B2259 -118.969 -63.947 17.295 1.00 0.01 N
ATOM 23 C4 A B2259 -118.234 -63.997 16.197 1.00 0.01 C
ATOM 24 P A B2260 -123.693 -67.529 14.143 1.00 0.01 P
ATOM 25 OP1 A B2260 -124.396 -66.637 13.227 1.00 0.01 O
ATOM 26 OP2 A B2260 -124.347 -67.951 15.361 1.00 0.01 O
ATOM 27 O5' A B2260 -123.187 -68.767 13.349 1.00 0.01 O
TER
Atoms:
OP1: (-121.008,-69.012,3.863)
OP2: (-119.464,-70.307,2.341)
C3': (-116.829,-65.922,5.212)
C1': (-116.051,-67.243,6.966)
C5': (-118.195,-67.839,4.138)
O6: (-110.180,-68.112,6.298)
O4': (-117.009,-67.989,6.241)
C8: (-114.344,-68.576,5.609)
C2: (-112.143,-66.102,8.402)
C6: (-111.175,-67.625,6.798)
C5: (-112.512,-67.882,6.455)
C4: (-113.519,-67.231,7.119)
P: (-119.831,-69.865,3.698)
C4': (-117.768,-67.104,5.387)
C2': (-116.250,-65.787,6.596)
O2': (-117.196,-65.224,7.480)
N1: (-111.078,-66.702,7.806)
N2: (-111.895,-65.229,9.385)
N3: (-113.395,-66.333,8.099)
N7: (-113.044,-68.734,5.500)
N9: (-114.705,-67.696,6.589)
O5': (-118.580,-69.186,4.423)
O3': (-117.463,-64.751,4.771)
OP2: (-119.464,-70.307,2.341)
C3': (-116.829,-65.922,5.212)
C1': (-116.051,-67.243,6.966)
C5': (-118.195,-67.839,4.138)
O6: (-110.180,-68.112,6.298)
O4': (-117.009,-67.989,6.241)
C8: (-114.344,-68.576,5.609)
C2: (-112.143,-66.102,8.402)
C6: (-111.175,-67.625,6.798)
C5: (-112.512,-67.882,6.455)
C4: (-113.519,-67.231,7.119)
P: (-119.831,-69.865,3.698)
C4': (-117.768,-67.104,5.387)
C2': (-116.250,-65.787,6.596)
O2': (-117.196,-65.224,7.480)
N1: (-111.078,-66.702,7.806)
N2: (-111.895,-65.229,9.385)
N3: (-113.395,-66.333,8.099)
N7: (-113.044,-68.734,5.500)
N9: (-114.705,-67.696,6.589)
O5': (-118.580,-69.186,4.423)
O3': (-117.463,-64.751,4.771)
OP1: (-117.204,-65.347,10.839)
OP2: (-118.825,-66.420,9.239)
C3': (-121.597,-66.151,13.595)
C1': (-119.712,-65.576,14.867)
C5': (-120.053,-66.957,11.778)
O4': (-119.315,-66.599,13.995)
C8: (-117.480,-64.439,14.234)
O2': (-121.763,-64.364,15.227)
C6: (-116.526,-62.607,17.020)
C5: (-117.038,-63.361,15.977)
C4: (-118.234,-63.997,16.197)
P: (-118.558,-65.454,10.309)
C4': (-120.435,-67.035,13.202)
C2': (-120.946,-64.953,14.244)
C2: (-118.373,-63.188,18.190)
N1: (-117.224,-62.526,18.135)
N3: (-118.969,-63.947,17.295)
N6: (-115.392,-61.936,17.005)
N7: (-116.555,-63.647,14.725)
N9: (-118.561,-64.677,15.059)
O5': (-119.569,-65.673,11.480)
O3': (-122.365,-66.811,14.565)
OP2: (-118.825,-66.420,9.239)
C3': (-121.597,-66.151,13.595)
C1': (-119.712,-65.576,14.867)
C5': (-120.053,-66.957,11.778)
O4': (-119.315,-66.599,13.995)
C8: (-117.480,-64.439,14.234)
O2': (-121.763,-64.364,15.227)
C6: (-116.526,-62.607,17.020)
C5: (-117.038,-63.361,15.977)
C4: (-118.234,-63.997,16.197)
P: (-118.558,-65.454,10.309)
C4': (-120.435,-67.035,13.202)
C2': (-120.946,-64.953,14.244)
C2: (-118.373,-63.188,18.190)
N1: (-117.224,-62.526,18.135)
N3: (-118.969,-63.947,17.295)
N6: (-115.392,-61.936,17.005)
N7: (-116.555,-63.647,14.725)
N9: (-118.561,-64.677,15.059)
O5': (-119.569,-65.673,11.480)
O3': (-122.365,-66.811,14.565)
Image (generated by PyMOL):