Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1NTB:B8:A9
Extra
PDB:
ATOM 1 O3' A A 7 11.910 40.318 3.560 1.00 47.66 O
ATOM 2 P C A 8 12.559 41.449 2.590 1.00 43.48 P
ATOM 3 OP1 C A 8 13.981 41.416 3.016 1.00 43.05 O
ATOM 4 OP2 C A 8 11.786 42.715 2.655 1.00 42.81 O
ATOM 5 O5' C A 8 12.491 40.896 1.097 1.00 43.31 O
ATOM 6 C5' C A 8 13.281 39.761 0.761 1.00 42.45 C
ATOM 7 C4' C A 8 12.561 38.939 -0.273 1.00 42.13 C
ATOM 8 O4' C A 8 12.324 39.775 -1.405 1.00 43.15 O
ATOM 9 C3' C A 8 13.314 37.758 -0.826 1.00 41.34 C
ATOM 10 O3' C A 8 13.129 36.656 0.010 1.00 40.74 O
ATOM 11 C2' C A 8 12.663 37.575 -2.183 1.00 41.91 C
ATOM 12 O2' C A 8 11.490 36.795 -2.124 1.00 42.37 O
ATOM 13 C1' C A 8 12.320 39.000 -2.580 1.00 42.96 C
ATOM 14 N1 C A 8 13.267 39.639 -3.520 1.00 44.02 N
ATOM 15 C2 C A 8 12.862 39.967 -4.814 1.00 44.42 C
ATOM 16 O2 C A 8 11.716 39.706 -5.185 1.00 43.68 O
ATOM 17 N3 C A 8 13.751 40.569 -5.637 1.00 46.03 N
ATOM 18 C4 C A 8 14.982 40.850 -5.216 1.00 45.63 C
ATOM 19 N4 C A 8 15.820 41.443 -6.072 1.00 46.00 N
ATOM 20 C5 C A 8 15.409 40.529 -3.902 1.00 45.90 C
ATOM 21 C6 C A 8 14.526 39.939 -3.095 1.00 45.28 C
ATOM 22 P G A 9 13.811 35.256 -0.318 1.00 40.18 P
ATOM 23 OP1 G A 9 15.237 35.484 -0.648 1.00 39.31 O
ATOM 24 OP2 G A 9 12.921 34.551 -1.280 1.00 40.21 O
ATOM 25 O5' G A 9 13.695 34.519 1.097 1.00 39.56 O
TER
ATOM 1 O3' U B 8 10.808 43.634 -11.726 1.00 49.49 O
ATOM 2 P U B 9 11.247 43.932 -10.205 1.00 48.00 P
ATOM 3 OP1 U B 9 11.511 45.380 -10.089 1.00 47.87 O
ATOM 4 OP2 U B 9 12.358 42.995 -9.956 1.00 50.00 O
ATOM 5 O5' U B 9 10.026 43.592 -9.197 1.00 48.08 O
ATOM 6 C5' U B 9 9.563 42.245 -8.947 1.00 47.73 C
ATOM 7 C4' U B 9 9.336 41.968 -7.461 1.00 46.99 C
ATOM 8 O4' U B 9 10.620 41.915 -6.778 1.00 46.95 O
ATOM 9 C3' U B 9 8.479 42.999 -6.707 1.00 45.80 C
ATOM 10 O3' U B 9 7.377 42.380 -6.029 1.00 45.68 O
ATOM 11 C2' U B 9 9.443 43.632 -5.703 1.00 45.44 C
ATOM 12 O2' U B 9 8.846 43.953 -4.464 1.00 42.83 O
ATOM 13 C1' U B 9 10.495 42.548 -5.517 1.00 46.40 C
ATOM 14 N1 U B 9 11.822 43.096 -5.107 1.00 46.23 N
ATOM 15 C2 U B 9 12.275 42.965 -3.795 1.00 45.95 C
ATOM 16 O2 U B 9 11.660 42.401 -2.891 1.00 44.39 O
ATOM 17 N3 U B 9 13.515 43.524 -3.578 1.00 46.72 N
ATOM 18 C4 U B 9 14.312 44.193 -4.498 1.00 46.75 C
ATOM 19 O4 U B 9 15.399 44.647 -4.153 1.00 47.45 O
ATOM 20 C5 U B 9 13.767 44.288 -5.822 1.00 46.27 C
ATOM 21 C6 U B 9 12.574 43.750 -6.068 1.00 45.77 C
ATOM 22 P U B 10 5.952 42.027 -6.689 1.00 45.61 P
ATOM 23 OP1 U B 10 5.853 42.558 -8.062 1.00 45.74 O
ATOM 24 OP2 U B 10 4.928 42.369 -5.675 1.00 44.12 O
ATOM 25 O5' U B 10 6.072 40.439 -6.818 1.00 45.82 O
TER
ATOM 2 P C A 8 12.559 41.449 2.590 1.00 43.48 P
ATOM 3 OP1 C A 8 13.981 41.416 3.016 1.00 43.05 O
ATOM 4 OP2 C A 8 11.786 42.715 2.655 1.00 42.81 O
ATOM 5 O5' C A 8 12.491 40.896 1.097 1.00 43.31 O
ATOM 6 C5' C A 8 13.281 39.761 0.761 1.00 42.45 C
ATOM 7 C4' C A 8 12.561 38.939 -0.273 1.00 42.13 C
ATOM 8 O4' C A 8 12.324 39.775 -1.405 1.00 43.15 O
ATOM 9 C3' C A 8 13.314 37.758 -0.826 1.00 41.34 C
ATOM 10 O3' C A 8 13.129 36.656 0.010 1.00 40.74 O
ATOM 11 C2' C A 8 12.663 37.575 -2.183 1.00 41.91 C
ATOM 12 O2' C A 8 11.490 36.795 -2.124 1.00 42.37 O
ATOM 13 C1' C A 8 12.320 39.000 -2.580 1.00 42.96 C
ATOM 14 N1 C A 8 13.267 39.639 -3.520 1.00 44.02 N
ATOM 15 C2 C A 8 12.862 39.967 -4.814 1.00 44.42 C
ATOM 16 O2 C A 8 11.716 39.706 -5.185 1.00 43.68 O
ATOM 17 N3 C A 8 13.751 40.569 -5.637 1.00 46.03 N
ATOM 18 C4 C A 8 14.982 40.850 -5.216 1.00 45.63 C
ATOM 19 N4 C A 8 15.820 41.443 -6.072 1.00 46.00 N
ATOM 20 C5 C A 8 15.409 40.529 -3.902 1.00 45.90 C
ATOM 21 C6 C A 8 14.526 39.939 -3.095 1.00 45.28 C
ATOM 22 P G A 9 13.811 35.256 -0.318 1.00 40.18 P
ATOM 23 OP1 G A 9 15.237 35.484 -0.648 1.00 39.31 O
ATOM 24 OP2 G A 9 12.921 34.551 -1.280 1.00 40.21 O
ATOM 25 O5' G A 9 13.695 34.519 1.097 1.00 39.56 O
TER
ATOM 1 O3' U B 8 10.808 43.634 -11.726 1.00 49.49 O
ATOM 2 P U B 9 11.247 43.932 -10.205 1.00 48.00 P
ATOM 3 OP1 U B 9 11.511 45.380 -10.089 1.00 47.87 O
ATOM 4 OP2 U B 9 12.358 42.995 -9.956 1.00 50.00 O
ATOM 5 O5' U B 9 10.026 43.592 -9.197 1.00 48.08 O
ATOM 6 C5' U B 9 9.563 42.245 -8.947 1.00 47.73 C
ATOM 7 C4' U B 9 9.336 41.968 -7.461 1.00 46.99 C
ATOM 8 O4' U B 9 10.620 41.915 -6.778 1.00 46.95 O
ATOM 9 C3' U B 9 8.479 42.999 -6.707 1.00 45.80 C
ATOM 10 O3' U B 9 7.377 42.380 -6.029 1.00 45.68 O
ATOM 11 C2' U B 9 9.443 43.632 -5.703 1.00 45.44 C
ATOM 12 O2' U B 9 8.846 43.953 -4.464 1.00 42.83 O
ATOM 13 C1' U B 9 10.495 42.548 -5.517 1.00 46.40 C
ATOM 14 N1 U B 9 11.822 43.096 -5.107 1.00 46.23 N
ATOM 15 C2 U B 9 12.275 42.965 -3.795 1.00 45.95 C
ATOM 16 O2 U B 9 11.660 42.401 -2.891 1.00 44.39 O
ATOM 17 N3 U B 9 13.515 43.524 -3.578 1.00 46.72 N
ATOM 18 C4 U B 9 14.312 44.193 -4.498 1.00 46.75 C
ATOM 19 O4 U B 9 15.399 44.647 -4.153 1.00 47.45 O
ATOM 20 C5 U B 9 13.767 44.288 -5.822 1.00 46.27 C
ATOM 21 C6 U B 9 12.574 43.750 -6.068 1.00 45.77 C
ATOM 22 P U B 10 5.952 42.027 -6.689 1.00 45.61 P
ATOM 23 OP1 U B 10 5.853 42.558 -8.062 1.00 45.74 O
ATOM 24 OP2 U B 10 4.928 42.369 -5.675 1.00 44.12 O
ATOM 25 O5' U B 10 6.072 40.439 -6.818 1.00 45.82 O
TER
Atoms:
C2: (12.862,39.967,-4.814)
OP1: (13.981,41.416,3.016)
OP2: (11.786,42.715,2.655)
C4: (14.982,40.850,-5.216)
O5': (12.491,40.896,1.097)
C3': (13.314,37.758,-0.826)
C1': (12.320,39.000,-2.580)
O4': (12.324,39.775,-1.405)
C5': (13.281,39.761,0.761)
P: (12.559,41.449,2.590)
O2: (11.716,39.706,-5.185)
C4': (12.561,38.939,-0.273)
C2': (12.663,37.575,-2.183)
O2': (11.490,36.795,-2.124)
N1: (13.267,39.639,-3.520)
N3: (13.751,40.569,-5.637)
N4: (15.820,41.443,-6.072)
C6: (14.526,39.939,-3.095)
C5: (15.409,40.529,-3.902)
O3': (13.129,36.656,0.010)
OP1: (13.981,41.416,3.016)
OP2: (11.786,42.715,2.655)
C4: (14.982,40.850,-5.216)
O5': (12.491,40.896,1.097)
C3': (13.314,37.758,-0.826)
C1': (12.320,39.000,-2.580)
O4': (12.324,39.775,-1.405)
C5': (13.281,39.761,0.761)
P: (12.559,41.449,2.590)
O2: (11.716,39.706,-5.185)
C4': (12.561,38.939,-0.273)
C2': (12.663,37.575,-2.183)
O2': (11.490,36.795,-2.124)
N1: (13.267,39.639,-3.520)
N3: (13.751,40.569,-5.637)
N4: (15.820,41.443,-6.072)
C6: (14.526,39.939,-3.095)
C5: (15.409,40.529,-3.902)
O3': (13.129,36.656,0.010)
C4: (14.312,44.193,-4.498)
N3: (13.515,43.524,-3.578)
OP1: (11.511,45.380,-10.089)
OP2: (12.358,42.995,-9.956)
C2: (12.275,42.965,-3.795)
C1': (10.495,42.548,-5.517)
C3': (8.479,42.999,-6.707)
O5': (10.026,43.592,-9.197)
O4': (10.620,41.915,-6.778)
C5': (9.563,42.245,-8.947)
P: (11.247,43.932,-10.205)
C4': (9.336,41.968,-7.461)
C2': (9.443,43.632,-5.703)
O2': (8.846,43.953,-4.464)
N1: (11.822,43.096,-5.107)
O4: (15.399,44.647,-4.153)
O2: (11.660,42.401,-2.891)
C6: (12.574,43.750,-6.068)
C5: (13.767,44.288,-5.822)
O3': (7.377,42.380,-6.029)
N3: (13.515,43.524,-3.578)
OP1: (11.511,45.380,-10.089)
OP2: (12.358,42.995,-9.956)
C2: (12.275,42.965,-3.795)
C1': (10.495,42.548,-5.517)
C3': (8.479,42.999,-6.707)
O5': (10.026,43.592,-9.197)
O4': (10.620,41.915,-6.778)
C5': (9.563,42.245,-8.947)
P: (11.247,43.932,-10.205)
C4': (9.336,41.968,-7.461)
C2': (9.443,43.632,-5.703)
O2': (8.846,43.953,-4.464)
N1: (11.822,43.096,-5.107)
O4: (15.399,44.647,-4.153)
O2: (11.660,42.401,-2.891)
C6: (12.574,43.750,-6.068)
C5: (13.767,44.288,-5.822)
O3': (7.377,42.380,-6.029)
Image (generated by PyMOL):