ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YJN:0448:0440

Extra

PDB:
ATOM 1 O3' A A 447 45.658 139.002 53.011 1.00 37.59 O
ATOM 2 P A A 448 44.223 138.286 52.989 1.00 39.46 P
ATOM 3 OP1 A A 448 43.565 138.508 54.297 1.00 37.21 O
ATOM 4 OP2 A A 448 44.370 136.907 52.461 1.00 38.21 O
ATOM 5 O5' A A 448 43.401 139.139 51.935 1.00 39.12 O
ATOM 6 C5' A A 448 43.823 139.227 50.572 1.00 38.10 C
ATOM 7 C4' A A 448 42.682 139.712 49.721 1.00 38.31 C
ATOM 8 O4' A A 448 41.663 138.681 49.640 1.00 38.91 O
ATOM 9 C3' A A 448 41.975 140.958 50.232 1.00 36.83 C
ATOM 10 O3' A A 448 41.543 141.681 49.097 1.00 36.91 O
ATOM 11 C2' A A 448 40.793 140.377 51.005 1.00 36.71 C
ATOM 12 O2' A A 448 39.673 141.222 51.075 1.00 35.14 O
ATOM 13 C1' A A 448 40.439 139.173 50.147 1.00 38.76 C
ATOM 14 N9 A A 448 39.800 138.087 50.881 1.00 40.89 N
ATOM 15 C8 A A 448 40.167 137.545 52.084 1.00 41.12 C
ATOM 16 N7 A A 448 39.442 136.517 52.440 1.00 43.20 N
ATOM 17 C5 A A 448 38.525 136.382 51.409 1.00 43.80 C
ATOM 18 C6 A A 448 37.491 135.461 51.174 1.00 44.68 C
ATOM 19 N6 A A 448 37.204 134.447 51.988 1.00 45.58 N
ATOM 20 N1 A A 448 36.758 135.612 50.052 1.00 44.89 N
ATOM 21 C2 A A 448 37.057 136.616 49.226 1.00 45.12 C
ATOM 22 N3 A A 448 38.007 137.538 49.331 1.00 45.24 N
ATOM 23 C4 A A 448 38.717 137.360 50.457 1.00 43.28 C
ATOM 24 P C A 449 42.409 142.920 48.581 1.00 36.48 P
ATOM 25 OP1 C A 449 41.670 143.531 47.448 1.00 36.46 O
ATOM 26 OP2 C A 449 43.803 142.456 48.385 1.00 33.65 O
ATOM 27 O5' C A 449 42.343 143.924 49.807 1.00 34.01 O
TER

ATOM 1 O3' C B 439 36.471 126.397 55.358 1.00 30.20 O
ATOM 2 P G B 440 35.021 126.829 55.874 1.00 31.96 P
ATOM 3 OP1 G B 440 34.998 126.647 57.346 1.00 31.68 O
ATOM 4 OP2 G B 440 34.024 126.135 55.034 1.00 31.89 O
ATOM 5 O5' G B 440 34.953 128.383 55.554 1.00 31.82 O
ATOM 6 C5' G B 440 35.986 129.255 56.031 1.00 34.32 C
ATOM 7 C4' G B 440 35.780 130.649 55.519 1.00 34.15 C
ATOM 8 O4' G B 440 35.923 130.642 54.076 1.00 35.89 O
ATOM 9 C3' G B 440 34.422 131.267 55.824 1.00 35.43 C
ATOM 10 O3' G B 440 34.575 132.652 56.076 1.00 36.10 O
ATOM 11 C2' G B 440 33.652 131.056 54.525 1.00 37.11 C
ATOM 12 O2' G B 440 32.651 132.035 54.316 1.00 37.35 O
ATOM 13 C1' G B 440 34.760 131.182 53.481 1.00 37.25 C
ATOM 14 N9 G B 440 34.477 130.421 52.268 1.00 38.67 N
ATOM 15 C8 G B 440 34.172 129.083 52.183 1.00 40.31 C
ATOM 16 N7 G B 440 33.950 128.683 50.961 1.00 40.07 N
ATOM 17 C5 G B 440 34.118 129.824 50.193 1.00 39.45 C
ATOM 18 C6 G B 440 34.002 130.008 48.806 1.00 38.91 C
ATOM 19 O6 G B 440 33.696 129.184 47.953 1.00 41.12 O
ATOM 20 N1 G B 440 34.281 131.314 48.436 1.00 39.46 N
ATOM 21 C2 G B 440 34.623 132.320 49.297 1.00 39.74 C
ATOM 22 N2 G B 440 34.891 133.503 48.739 1.00 40.83 N
ATOM 23 N3 G B 440 34.708 132.172 50.604 1.00 40.51 N
ATOM 24 C4 G B 440 34.451 130.904 50.982 1.00 39.56 C
ATOM 25 P A B 441 34.315 133.226 57.554 1.00 36.43 P
ATOM 26 OP1 A B 441 34.288 132.094 58.512 1.00 37.05 O
ATOM 27 OP2 A B 441 33.160 134.151 57.482 1.00 38.14 O
ATOM 28 O5' A B 441 35.611 134.095 57.844 1.00 34.49 O
TER

Atoms:
OP1: (43.565,138.508,54.297)
OP2: (44.370,136.907,52.461)
C3': (41.975,140.958,50.232)
C1': (40.439,139.173,50.147)
C5': (43.823,139.227,50.572)
O4': (41.663,138.681,49.640)
C8: (40.167,137.545,52.084)
O2': (39.673,141.222,51.075)
C6: (37.491,135.461,51.174)
C5: (38.525,136.382,51.409)
C4: (38.717,137.360,50.457)
P: (44.223,138.286,52.989)
C4': (42.682,139.712,49.721)
C2': (40.793,140.377,51.005)
C2: (37.057,136.616,49.226)
N1: (36.758,135.612,50.052)
N3: (38.007,137.538,49.331)
N6: (37.204,134.447,51.988)
N7: (39.442,136.517,52.440)
N9: (39.800,138.087,50.881)
O5': (43.401,139.139,51.935)
O3': (41.543,141.681,49.097)
OP1: (34.998,126.647,57.346)
OP2: (34.024,126.135,55.034)
C3': (34.422,131.267,55.824)
C1': (34.760,131.182,53.481)
C5': (35.986,129.255,56.031)
O6: (33.696,129.184,47.953)
O4': (35.923,130.642,54.076)
C8: (34.172,129.083,52.183)
C2: (34.623,132.320,49.297)
C6: (34.002,130.008,48.806)
C5: (34.118,129.824,50.193)
C4: (34.451,130.904,50.982)
P: (35.021,126.829,55.874)
C4': (35.780,130.649,55.519)
C2': (33.652,131.056,54.525)
O2': (32.651,132.035,54.316)
N1: (34.281,131.314,48.436)
N2: (34.891,133.503,48.739)
N3: (34.708,132.172,50.604)
N7: (33.950,128.683,50.961)
N9: (34.477,130.421,52.268)
O5': (34.953,128.383,55.554)
O3': (34.575,132.652,56.076)
Image (generated by PyMOL):
PyMOL image
show in jmol