ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YJW:0617:02016

Extra

PDB:
ATOM 1 P A A 617 39.294 112.641 95.337 1.00 26.03 P
ATOM 2 OP1 A A 617 39.089 111.491 96.238 1.00 26.38 O
ATOM 3 OP2 A A 617 38.632 112.657 94.020 1.00 28.01 O
ATOM 4 O5' A A 617 38.921 113.975 96.134 1.00 26.48 O
ATOM 5 C5' A A 617 38.470 115.170 95.452 1.00 26.11 C
ATOM 6 C4' A A 617 39.016 116.409 96.137 1.00 28.79 C
ATOM 7 O4' A A 617 38.667 116.351 97.545 1.00 31.09 O
ATOM 8 C3' A A 617 40.533 116.579 96.145 1.00 29.82 C
ATOM 9 O3' A A 617 41.021 117.194 94.959 1.00 29.26 O
ATOM 10 C2' A A 617 40.751 117.479 97.351 1.00 31.69 C
ATOM 11 O2' A A 617 40.468 118.839 97.085 1.00 35.19 O
ATOM 12 C1' A A 617 39.706 116.933 98.323 1.00 31.35 C
ATOM 13 N9 A A 617 40.244 115.916 99.231 1.00 31.33 N
ATOM 14 C8 A A 617 39.921 114.582 99.298 1.00 31.56 C
ATOM 15 N7 A A 617 40.574 113.928 100.225 1.00 31.31 N
ATOM 16 C5 A A 617 41.383 114.892 100.809 1.00 30.17 C
ATOM 17 C6 A A 617 42.314 114.832 101.851 1.00 30.12 C
ATOM 18 N6 A A 617 42.600 113.717 102.522 1.00 31.78 N
ATOM 19 N1 A A 617 42.953 115.968 102.187 1.00 28.66 N
ATOM 20 C2 A A 617 42.669 117.082 101.514 1.00 29.31 C
ATOM 21 N3 A A 617 41.815 117.267 100.518 1.00 30.99 N
ATOM 22 C4 A A 617 41.193 116.118 100.207 1.00 30.61 C
ATOM 23 P A A 618 42.365 116.643 94.260 1.00 32.58 P
ATOM 24 OP1 A A 618 42.520 117.439 93.017 1.00 32.51 O
ATOM 25 OP2 A A 618 42.326 115.164 94.170 1.00 31.87 O
ATOM 26 O5' A A 618 43.548 116.981 95.279 1.00 31.50 O
TER

ATOM 1 O3' U B2015 42.355 108.555 109.798 1.00 30.30 O
ATOM 2 P G B2016 43.618 107.915 109.055 1.00 30.24 P
ATOM 3 OP1 G B2016 43.377 106.459 108.905 1.00 30.39 O
ATOM 4 OP2 G B2016 44.841 108.386 109.754 1.00 31.25 O
ATOM 5 O5' G B2016 43.573 108.576 107.612 1.00 29.57 O
ATOM 6 C5' G B2016 42.433 108.408 106.761 1.00 29.15 C
ATOM 7 C4' G B2016 42.511 109.372 105.610 1.00 28.72 C
ATOM 8 O4' G B2016 42.440 110.726 106.121 1.00 28.98 O
ATOM 9 C3' G B2016 43.815 109.324 104.837 1.00 28.22 C
ATOM 10 O3' G B2016 43.770 108.298 103.855 1.00 30.13 O
ATOM 11 C2' G B2016 43.872 110.712 104.223 1.00 28.94 C
ATOM 12 O2' G B2016 43.041 110.824 103.088 1.00 27.74 O
ATOM 13 C1' G B2016 43.287 111.565 105.355 1.00 31.02 C
ATOM 14 N9 G B2016 44.293 112.159 106.240 1.00 32.75 N
ATOM 15 C8 G B2016 44.823 111.618 107.387 1.00 32.65 C
ATOM 16 N7 G B2016 45.724 112.380 107.945 1.00 32.53 N
ATOM 17 C5 G B2016 45.794 113.494 107.121 1.00 32.76 C
ATOM 18 C6 G B2016 46.604 114.649 107.207 1.00 34.03 C
ATOM 19 O6 G B2016 47.466 114.930 108.052 1.00 36.63 O
ATOM 20 N1 G B2016 46.342 115.530 106.168 1.00 33.97 N
ATOM 21 C2 G B2016 45.430 115.327 105.170 1.00 32.68 C
ATOM 22 N2 G B2016 45.322 116.300 104.260 1.00 34.44 N
ATOM 23 N3 G B2016 44.680 114.253 105.070 1.00 32.29 N
ATOM 24 C4 G B2016 44.910 113.382 106.072 1.00 32.59 C
ATOM 25 P C B2017 45.001 107.275 103.701 1.00 31.85 P
ATOM 26 OP1 C B2017 44.544 106.212 102.772 1.00 30.38 O
ATOM 27 OP2 C B2017 45.499 106.898 105.063 1.00 31.14 O
ATOM 28 O5' C B2017 46.113 108.141 102.961 1.00 30.07 O
TER

Atoms:
OP1: (39.089,111.491,96.238)
OP2: (38.632,112.657,94.020)
C3': (40.533,116.579,96.145)
C1': (39.706,116.933,98.323)
C5': (38.470,115.170,95.452)
O4': (38.667,116.351,97.545)
C8: (39.921,114.582,99.298)
O2': (40.468,118.839,97.085)
C6: (42.314,114.832,101.851)
C5: (41.383,114.892,100.809)
C4: (41.193,116.118,100.207)
P: (39.294,112.641,95.337)
C4': (39.016,116.409,96.137)
C2': (40.751,117.479,97.351)
C2: (42.669,117.082,101.514)
N1: (42.953,115.968,102.187)
N3: (41.815,117.267,100.518)
N6: (42.600,113.717,102.522)
N7: (40.574,113.928,100.225)
N9: (40.244,115.916,99.231)
O5': (38.921,113.975,96.134)
O3': (41.021,117.194,94.959)
OP1: (43.377,106.459,108.905)
OP2: (44.841,108.386,109.754)
C3': (43.815,109.324,104.837)
C1': (43.287,111.565,105.355)
C5': (42.433,108.408,106.761)
O6: (47.466,114.930,108.052)
O4': (42.440,110.726,106.121)
C8: (44.823,111.618,107.387)
C2: (45.430,115.327,105.170)
C6: (46.604,114.649,107.207)
C5: (45.794,113.494,107.121)
C4: (44.910,113.382,106.072)
P: (43.618,107.915,109.055)
C4': (42.511,109.372,105.610)
C2': (43.872,110.712,104.223)
O2': (43.041,110.824,103.088)
N1: (46.342,115.530,106.168)
N2: (45.322,116.300,104.260)
N3: (44.680,114.253,105.070)
N7: (45.724,112.380,107.945)
N9: (44.293,112.159,106.240)
O5': (43.573,108.576,107.612)
O3': (43.770,108.298,103.855)
Image (generated by PyMOL):
PyMOL image
show in jmol