Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1ZDH:S2:S3
Extra
PDB:
ATOM 1 O3' G A 1 2.054 103.390 -7.805 0.60 53.32 O
ATOM 2 P A A 2 2.091 105.017 -7.647 0.60 49.55 P
ATOM 3 OP1 A A 2 3.402 105.471 -8.250 0.60 49.38 O
ATOM 4 OP2 A A 2 1.776 105.420 -6.225 0.60 50.60 O
ATOM 5 O5' A A 2 0.892 105.537 -8.577 0.60 48.86 O
ATOM 6 C5' A A 2 -0.491 105.371 -8.171 0.60 48.24 C
ATOM 7 C4' A A 2 -1.401 105.664 -9.342 0.60 48.21 C
ATOM 8 O4' A A 2 -1.154 107.026 -9.787 0.60 48.05 O
ATOM 9 C3' A A 2 -1.115 104.780 -10.549 0.60 48.72 C
ATOM 10 O3' A A 2 -2.015 103.676 -10.564 0.60 52.20 O
ATOM 11 C2' A A 2 -1.305 105.712 -11.745 0.60 47.34 C
ATOM 12 O2' A A 2 -2.651 105.842 -12.171 0.60 48.17 O
ATOM 13 C1' A A 2 -0.812 107.037 -11.161 0.60 46.32 C
ATOM 14 N9 A A 2 0.642 107.176 -11.231 0.60 44.01 N
ATOM 15 C8 A A 2 1.571 106.227 -11.590 0.60 42.23 C
ATOM 16 N7 A A 2 2.812 106.655 -11.530 0.60 41.03 N
ATOM 17 C5 A A 2 2.695 107.974 -11.097 0.60 40.30 C
ATOM 18 C6 A A 2 3.653 108.981 -10.816 0.60 40.21 C
ATOM 19 N6 A A 2 4.986 108.817 -10.932 0.60 39.01 N
ATOM 20 N1 A A 2 3.186 110.191 -10.407 0.60 40.72 N
ATOM 21 C2 A A 2 1.861 110.366 -10.283 0.60 40.49 C
ATOM 22 N3 A A 2 0.871 109.499 -10.514 0.60 41.44 N
ATOM 23 C4 A A 2 1.361 108.309 -10.918 0.60 41.60 C
ATOM 24 P G A 3 -1.471 102.201 -10.173 0.60 52.70 P
ATOM 25 OP1 G A 3 -0.160 101.956 -10.869 0.60 54.77 O
ATOM 26 OP2 G A 3 -2.624 101.270 -10.398 0.60 53.99 O
ATOM 27 O5' G A 3 -1.177 102.293 -8.605 0.60 53.69 O
TER
ATOM 1 O3' A B 2 -2.015 103.676 -10.564 0.60 52.20 O
ATOM 2 P G B 3 -1.471 102.201 -10.173 0.60 52.70 P
ATOM 3 OP1 G B 3 -0.160 101.956 -10.869 0.60 54.77 O
ATOM 4 OP2 G B 3 -2.624 101.270 -10.398 0.60 53.99 O
ATOM 5 O5' G B 3 -1.177 102.293 -8.605 0.60 53.69 O
ATOM 6 C5' G B 3 -2.246 102.597 -7.709 0.60 53.04 C
ATOM 7 C4' G B 3 -3.112 101.377 -7.513 0.60 52.71 C
ATOM 8 O4' G B 3 -2.369 100.378 -6.758 0.60 53.03 O
ATOM 9 C3' G B 3 -4.378 101.630 -6.714 0.60 52.64 C
ATOM 10 O3' G B 3 -5.401 102.075 -7.602 0.60 48.53 O
ATOM 11 C2' G B 3 -4.663 100.258 -6.102 0.60 53.46 C
ATOM 12 O2' G B 3 -5.389 99.417 -6.980 0.60 56.46 O
ATOM 13 C1' G B 3 -3.250 99.708 -5.861 0.60 53.05 C
ATOM 14 N9 G B 3 -2.787 99.987 -4.502 0.60 52.57 N
ATOM 15 C8 G B 3 -1.675 100.712 -4.120 0.60 51.29 C
ATOM 16 N7 G B 3 -1.590 100.883 -2.824 0.60 50.75 N
ATOM 17 C5 G B 3 -2.707 100.224 -2.322 0.60 50.08 C
ATOM 18 C6 G B 3 -3.176 100.108 -0.990 0.60 50.22 C
ATOM 19 O6 G B 3 -2.708 100.631 0.044 0.60 50.27 O
ATOM 20 N1 G B 3 -4.322 99.303 -0.919 0.60 49.59 N
ATOM 21 C2 G B 3 -4.952 98.702 -2.004 0.60 50.87 C
ATOM 22 N2 G B 3 -6.012 97.873 -1.732 0.60 48.80 N
ATOM 23 N3 G B 3 -4.562 98.872 -3.260 0.60 50.93 N
ATOM 24 C4 G B 3 -3.439 99.627 -3.341 0.60 50.61 C
ATOM 25 P G B 4 -6.414 103.238 -7.142 0.60 44.14 P
ATOM 26 OP1 G B 4 -7.140 103.710 -8.365 0.60 43.41 O
ATOM 27 OP2 G B 4 -5.652 104.227 -6.317 0.60 44.55 O
ATOM 28 O5' G B 4 -7.430 102.524 -6.132 0.60 41.76 O
TER
ATOM 2 P A A 2 2.091 105.017 -7.647 0.60 49.55 P
ATOM 3 OP1 A A 2 3.402 105.471 -8.250 0.60 49.38 O
ATOM 4 OP2 A A 2 1.776 105.420 -6.225 0.60 50.60 O
ATOM 5 O5' A A 2 0.892 105.537 -8.577 0.60 48.86 O
ATOM 6 C5' A A 2 -0.491 105.371 -8.171 0.60 48.24 C
ATOM 7 C4' A A 2 -1.401 105.664 -9.342 0.60 48.21 C
ATOM 8 O4' A A 2 -1.154 107.026 -9.787 0.60 48.05 O
ATOM 9 C3' A A 2 -1.115 104.780 -10.549 0.60 48.72 C
ATOM 10 O3' A A 2 -2.015 103.676 -10.564 0.60 52.20 O
ATOM 11 C2' A A 2 -1.305 105.712 -11.745 0.60 47.34 C
ATOM 12 O2' A A 2 -2.651 105.842 -12.171 0.60 48.17 O
ATOM 13 C1' A A 2 -0.812 107.037 -11.161 0.60 46.32 C
ATOM 14 N9 A A 2 0.642 107.176 -11.231 0.60 44.01 N
ATOM 15 C8 A A 2 1.571 106.227 -11.590 0.60 42.23 C
ATOM 16 N7 A A 2 2.812 106.655 -11.530 0.60 41.03 N
ATOM 17 C5 A A 2 2.695 107.974 -11.097 0.60 40.30 C
ATOM 18 C6 A A 2 3.653 108.981 -10.816 0.60 40.21 C
ATOM 19 N6 A A 2 4.986 108.817 -10.932 0.60 39.01 N
ATOM 20 N1 A A 2 3.186 110.191 -10.407 0.60 40.72 N
ATOM 21 C2 A A 2 1.861 110.366 -10.283 0.60 40.49 C
ATOM 22 N3 A A 2 0.871 109.499 -10.514 0.60 41.44 N
ATOM 23 C4 A A 2 1.361 108.309 -10.918 0.60 41.60 C
ATOM 24 P G A 3 -1.471 102.201 -10.173 0.60 52.70 P
ATOM 25 OP1 G A 3 -0.160 101.956 -10.869 0.60 54.77 O
ATOM 26 OP2 G A 3 -2.624 101.270 -10.398 0.60 53.99 O
ATOM 27 O5' G A 3 -1.177 102.293 -8.605 0.60 53.69 O
TER
ATOM 1 O3' A B 2 -2.015 103.676 -10.564 0.60 52.20 O
ATOM 2 P G B 3 -1.471 102.201 -10.173 0.60 52.70 P
ATOM 3 OP1 G B 3 -0.160 101.956 -10.869 0.60 54.77 O
ATOM 4 OP2 G B 3 -2.624 101.270 -10.398 0.60 53.99 O
ATOM 5 O5' G B 3 -1.177 102.293 -8.605 0.60 53.69 O
ATOM 6 C5' G B 3 -2.246 102.597 -7.709 0.60 53.04 C
ATOM 7 C4' G B 3 -3.112 101.377 -7.513 0.60 52.71 C
ATOM 8 O4' G B 3 -2.369 100.378 -6.758 0.60 53.03 O
ATOM 9 C3' G B 3 -4.378 101.630 -6.714 0.60 52.64 C
ATOM 10 O3' G B 3 -5.401 102.075 -7.602 0.60 48.53 O
ATOM 11 C2' G B 3 -4.663 100.258 -6.102 0.60 53.46 C
ATOM 12 O2' G B 3 -5.389 99.417 -6.980 0.60 56.46 O
ATOM 13 C1' G B 3 -3.250 99.708 -5.861 0.60 53.05 C
ATOM 14 N9 G B 3 -2.787 99.987 -4.502 0.60 52.57 N
ATOM 15 C8 G B 3 -1.675 100.712 -4.120 0.60 51.29 C
ATOM 16 N7 G B 3 -1.590 100.883 -2.824 0.60 50.75 N
ATOM 17 C5 G B 3 -2.707 100.224 -2.322 0.60 50.08 C
ATOM 18 C6 G B 3 -3.176 100.108 -0.990 0.60 50.22 C
ATOM 19 O6 G B 3 -2.708 100.631 0.044 0.60 50.27 O
ATOM 20 N1 G B 3 -4.322 99.303 -0.919 0.60 49.59 N
ATOM 21 C2 G B 3 -4.952 98.702 -2.004 0.60 50.87 C
ATOM 22 N2 G B 3 -6.012 97.873 -1.732 0.60 48.80 N
ATOM 23 N3 G B 3 -4.562 98.872 -3.260 0.60 50.93 N
ATOM 24 C4 G B 3 -3.439 99.627 -3.341 0.60 50.61 C
ATOM 25 P G B 4 -6.414 103.238 -7.142 0.60 44.14 P
ATOM 26 OP1 G B 4 -7.140 103.710 -8.365 0.60 43.41 O
ATOM 27 OP2 G B 4 -5.652 104.227 -6.317 0.60 44.55 O
ATOM 28 O5' G B 4 -7.430 102.524 -6.132 0.60 41.76 O
TER
Atoms:
OP1: (3.402,105.471,-8.250)
OP2: (1.776,105.420,-6.225)
C3': (-1.115,104.780,-10.549)
C1': (-0.812,107.037,-11.161)
C5': (-0.491,105.371,-8.171)
O4': (-1.154,107.026,-9.787)
C8: (1.571,106.227,-11.590)
O2': (-2.651,105.842,-12.171)
C6: (3.653,108.981,-10.816)
C5: (2.695,107.974,-11.097)
C4: (1.361,108.309,-10.918)
P: (2.091,105.017,-7.647)
C4': (-1.401,105.664,-9.342)
C2': (-1.305,105.712,-11.745)
C2: (1.861,110.366,-10.283)
N1: (3.186,110.191,-10.407)
N3: (0.871,109.499,-10.514)
N6: (4.986,108.817,-10.932)
N7: (2.812,106.655,-11.530)
N9: (0.642,107.176,-11.231)
O5': (0.892,105.537,-8.577)
O3': (-2.015,103.676,-10.564)
OP2: (1.776,105.420,-6.225)
C3': (-1.115,104.780,-10.549)
C1': (-0.812,107.037,-11.161)
C5': (-0.491,105.371,-8.171)
O4': (-1.154,107.026,-9.787)
C8: (1.571,106.227,-11.590)
O2': (-2.651,105.842,-12.171)
C6: (3.653,108.981,-10.816)
C5: (2.695,107.974,-11.097)
C4: (1.361,108.309,-10.918)
P: (2.091,105.017,-7.647)
C4': (-1.401,105.664,-9.342)
C2': (-1.305,105.712,-11.745)
C2: (1.861,110.366,-10.283)
N1: (3.186,110.191,-10.407)
N3: (0.871,109.499,-10.514)
N6: (4.986,108.817,-10.932)
N7: (2.812,106.655,-11.530)
N9: (0.642,107.176,-11.231)
O5': (0.892,105.537,-8.577)
O3': (-2.015,103.676,-10.564)
OP1: (-0.160,101.956,-10.869)
OP2: (-2.624,101.270,-10.398)
C3': (-4.378,101.630,-6.714)
C1': (-3.250,99.708,-5.861)
C5': (-2.246,102.597,-7.709)
O6: (-2.708,100.631,0.044)
O4': (-2.369,100.378,-6.758)
C8: (-1.675,100.712,-4.120)
C2: (-4.952,98.702,-2.004)
C6: (-3.176,100.108,-0.990)
C5: (-2.707,100.224,-2.322)
C4: (-3.439,99.627,-3.341)
P: (-1.471,102.201,-10.173)
C4': (-3.112,101.377,-7.513)
C2': (-4.663,100.258,-6.102)
O2': (-5.389,99.417,-6.980)
N1: (-4.322,99.303,-0.919)
N2: (-6.012,97.873,-1.732)
N3: (-4.562,98.872,-3.260)
N7: (-1.590,100.883,-2.824)
N9: (-2.787,99.987,-4.502)
O5': (-1.177,102.293,-8.605)
O3': (-5.401,102.075,-7.602)
OP2: (-2.624,101.270,-10.398)
C3': (-4.378,101.630,-6.714)
C1': (-3.250,99.708,-5.861)
C5': (-2.246,102.597,-7.709)
O6: (-2.708,100.631,0.044)
O4': (-2.369,100.378,-6.758)
C8: (-1.675,100.712,-4.120)
C2: (-4.952,98.702,-2.004)
C6: (-3.176,100.108,-0.990)
C5: (-2.707,100.224,-2.322)
C4: (-3.439,99.627,-3.341)
P: (-1.471,102.201,-10.173)
C4': (-3.112,101.377,-7.513)
C2': (-4.663,100.258,-6.102)
O2': (-5.389,99.417,-6.980)
N1: (-4.322,99.303,-0.919)
N2: (-6.012,97.873,-1.732)
N3: (-4.562,98.872,-3.260)
N7: (-1.590,100.883,-2.824)
N9: (-2.787,99.987,-4.502)
O5': (-1.177,102.293,-8.605)
O3': (-5.401,102.075,-7.602)
Image (generated by PyMOL):