Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1ZDI:S2:S3
Extra
PDB:
ATOM 1 O3' G A 1 2.041 103.341 -7.739 0.70 46.65 O
ATOM 2 P A A 2 2.112 104.948 -7.534 0.70 43.16 P
ATOM 3 OP1 A A 2 3.413 105.411 -8.134 0.70 42.60 O
ATOM 4 OP2 A A 2 1.790 105.294 -6.113 0.70 44.26 O
ATOM 5 O5' A A 2 0.927 105.495 -8.453 0.70 42.79 O
ATOM 6 C5' A A 2 -0.480 105.244 -8.145 0.70 42.36 C
ATOM 7 C4' A A 2 -1.319 105.538 -9.360 0.70 42.53 C
ATOM 8 O4' A A 2 -1.039 106.904 -9.777 0.70 42.96 O
ATOM 9 C3' A A 2 -0.964 104.653 -10.544 0.70 42.87 C
ATOM 10 O3' A A 2 -1.887 103.570 -10.623 0.70 46.63 O
ATOM 11 C2' A A 2 -1.114 105.580 -11.746 0.70 41.70 C
ATOM 12 O2' A A 2 -2.449 105.687 -12.242 0.70 39.23 O
ATOM 13 C1' A A 2 -0.687 106.926 -11.152 0.70 40.93 C
ATOM 14 N9 A A 2 0.757 107.135 -11.219 0.70 39.13 N
ATOM 15 C8 A A 2 1.737 106.224 -11.528 0.70 38.07 C
ATOM 16 N7 A A 2 2.955 106.717 -11.452 0.70 38.19 N
ATOM 17 C5 A A 2 2.762 108.042 -11.068 0.70 36.24 C
ATOM 18 C6 A A 2 3.675 109.112 -10.798 0.70 35.75 C
ATOM 19 N6 A A 2 5.018 108.997 -10.831 0.70 34.75 N
ATOM 20 N1 A A 2 3.141 110.311 -10.464 0.70 35.70 N
ATOM 21 C2 A A 2 1.815 110.420 -10.390 0.70 36.25 C
ATOM 22 N3 A A 2 0.872 109.497 -10.603 0.70 36.43 N
ATOM 23 C4 A A 2 1.418 108.316 -10.950 0.70 37.43 C
ATOM 24 P G A 3 -1.441 102.115 -10.078 0.70 46.70 P
ATOM 25 OP1 G A 3 -0.048 101.765 -10.591 0.70 49.22 O
ATOM 26 OP2 G A 3 -2.607 101.214 -10.391 0.70 49.06 O
ATOM 27 O5' G A 3 -1.327 102.299 -8.492 0.70 47.81 O
TER
ATOM 1 O3' A B 2 -1.887 103.570 -10.623 0.70 46.63 O
ATOM 2 P G B 3 -1.441 102.115 -10.078 0.70 46.70 P
ATOM 3 OP1 G B 3 -0.048 101.765 -10.591 0.70 49.22 O
ATOM 4 OP2 G B 3 -2.607 101.214 -10.391 0.70 49.06 O
ATOM 5 O5' G B 3 -1.327 102.299 -8.492 0.70 47.81 O
ATOM 6 C5' G B 3 -2.510 102.651 -7.734 0.70 48.47 C
ATOM 7 C4' G B 3 -3.334 101.426 -7.456 0.70 48.66 C
ATOM 8 O4' G B 3 -2.548 100.486 -6.657 0.70 49.09 O
ATOM 9 C3' G B 3 -4.603 101.667 -6.660 0.70 48.29 C
ATOM 10 O3' G B 3 -5.673 102.042 -7.543 0.70 44.62 O
ATOM 11 C2' G B 3 -4.836 100.317 -5.972 0.70 49.61 C
ATOM 12 O2' G B 3 -5.522 99.380 -6.807 0.70 51.20 O
ATOM 13 C1' G B 3 -3.387 99.828 -5.719 0.70 49.20 C
ATOM 14 N9 G B 3 -2.941 100.168 -4.370 0.70 48.54 N
ATOM 15 C8 G B 3 -1.871 100.966 -4.002 0.70 48.19 C
ATOM 16 N7 G B 3 -1.783 101.135 -2.703 0.70 47.53 N
ATOM 17 C5 G B 3 -2.847 100.409 -2.193 0.70 47.09 C
ATOM 18 C6 G B 3 -3.290 100.242 -0.858 0.70 47.16 C
ATOM 19 O6 G B 3 -2.815 100.765 0.187 0.70 46.67 O
ATOM 20 N1 G B 3 -4.403 99.384 -0.790 0.70 47.11 N
ATOM 21 C2 G B 3 -5.021 98.784 -1.883 0.70 48.07 C
ATOM 22 N2 G B 3 -6.094 97.925 -1.647 0.70 47.99 N
ATOM 23 N3 G B 3 -4.628 98.971 -3.128 0.70 47.86 N
ATOM 24 C4 G B 3 -3.550 99.780 -3.211 0.70 47.66 C
ATOM 25 P G B 4 -6.630 103.297 -7.160 0.70 39.44 P
ATOM 26 OP1 G B 4 -7.319 103.756 -8.418 0.70 38.32 O
ATOM 27 OP2 G B 4 -5.792 104.267 -6.385 0.70 39.39 O
ATOM 28 O5' G B 4 -7.692 102.671 -6.141 0.70 35.64 O
TER
ATOM 2 P A A 2 2.112 104.948 -7.534 0.70 43.16 P
ATOM 3 OP1 A A 2 3.413 105.411 -8.134 0.70 42.60 O
ATOM 4 OP2 A A 2 1.790 105.294 -6.113 0.70 44.26 O
ATOM 5 O5' A A 2 0.927 105.495 -8.453 0.70 42.79 O
ATOM 6 C5' A A 2 -0.480 105.244 -8.145 0.70 42.36 C
ATOM 7 C4' A A 2 -1.319 105.538 -9.360 0.70 42.53 C
ATOM 8 O4' A A 2 -1.039 106.904 -9.777 0.70 42.96 O
ATOM 9 C3' A A 2 -0.964 104.653 -10.544 0.70 42.87 C
ATOM 10 O3' A A 2 -1.887 103.570 -10.623 0.70 46.63 O
ATOM 11 C2' A A 2 -1.114 105.580 -11.746 0.70 41.70 C
ATOM 12 O2' A A 2 -2.449 105.687 -12.242 0.70 39.23 O
ATOM 13 C1' A A 2 -0.687 106.926 -11.152 0.70 40.93 C
ATOM 14 N9 A A 2 0.757 107.135 -11.219 0.70 39.13 N
ATOM 15 C8 A A 2 1.737 106.224 -11.528 0.70 38.07 C
ATOM 16 N7 A A 2 2.955 106.717 -11.452 0.70 38.19 N
ATOM 17 C5 A A 2 2.762 108.042 -11.068 0.70 36.24 C
ATOM 18 C6 A A 2 3.675 109.112 -10.798 0.70 35.75 C
ATOM 19 N6 A A 2 5.018 108.997 -10.831 0.70 34.75 N
ATOM 20 N1 A A 2 3.141 110.311 -10.464 0.70 35.70 N
ATOM 21 C2 A A 2 1.815 110.420 -10.390 0.70 36.25 C
ATOM 22 N3 A A 2 0.872 109.497 -10.603 0.70 36.43 N
ATOM 23 C4 A A 2 1.418 108.316 -10.950 0.70 37.43 C
ATOM 24 P G A 3 -1.441 102.115 -10.078 0.70 46.70 P
ATOM 25 OP1 G A 3 -0.048 101.765 -10.591 0.70 49.22 O
ATOM 26 OP2 G A 3 -2.607 101.214 -10.391 0.70 49.06 O
ATOM 27 O5' G A 3 -1.327 102.299 -8.492 0.70 47.81 O
TER
ATOM 1 O3' A B 2 -1.887 103.570 -10.623 0.70 46.63 O
ATOM 2 P G B 3 -1.441 102.115 -10.078 0.70 46.70 P
ATOM 3 OP1 G B 3 -0.048 101.765 -10.591 0.70 49.22 O
ATOM 4 OP2 G B 3 -2.607 101.214 -10.391 0.70 49.06 O
ATOM 5 O5' G B 3 -1.327 102.299 -8.492 0.70 47.81 O
ATOM 6 C5' G B 3 -2.510 102.651 -7.734 0.70 48.47 C
ATOM 7 C4' G B 3 -3.334 101.426 -7.456 0.70 48.66 C
ATOM 8 O4' G B 3 -2.548 100.486 -6.657 0.70 49.09 O
ATOM 9 C3' G B 3 -4.603 101.667 -6.660 0.70 48.29 C
ATOM 10 O3' G B 3 -5.673 102.042 -7.543 0.70 44.62 O
ATOM 11 C2' G B 3 -4.836 100.317 -5.972 0.70 49.61 C
ATOM 12 O2' G B 3 -5.522 99.380 -6.807 0.70 51.20 O
ATOM 13 C1' G B 3 -3.387 99.828 -5.719 0.70 49.20 C
ATOM 14 N9 G B 3 -2.941 100.168 -4.370 0.70 48.54 N
ATOM 15 C8 G B 3 -1.871 100.966 -4.002 0.70 48.19 C
ATOM 16 N7 G B 3 -1.783 101.135 -2.703 0.70 47.53 N
ATOM 17 C5 G B 3 -2.847 100.409 -2.193 0.70 47.09 C
ATOM 18 C6 G B 3 -3.290 100.242 -0.858 0.70 47.16 C
ATOM 19 O6 G B 3 -2.815 100.765 0.187 0.70 46.67 O
ATOM 20 N1 G B 3 -4.403 99.384 -0.790 0.70 47.11 N
ATOM 21 C2 G B 3 -5.021 98.784 -1.883 0.70 48.07 C
ATOM 22 N2 G B 3 -6.094 97.925 -1.647 0.70 47.99 N
ATOM 23 N3 G B 3 -4.628 98.971 -3.128 0.70 47.86 N
ATOM 24 C4 G B 3 -3.550 99.780 -3.211 0.70 47.66 C
ATOM 25 P G B 4 -6.630 103.297 -7.160 0.70 39.44 P
ATOM 26 OP1 G B 4 -7.319 103.756 -8.418 0.70 38.32 O
ATOM 27 OP2 G B 4 -5.792 104.267 -6.385 0.70 39.39 O
ATOM 28 O5' G B 4 -7.692 102.671 -6.141 0.70 35.64 O
TER
Atoms:
OP1: (3.413,105.411,-8.134)
OP2: (1.790,105.294,-6.113)
C3': (-0.964,104.653,-10.544)
C1': (-0.687,106.926,-11.152)
C5': (-0.480,105.244,-8.145)
O4': (-1.039,106.904,-9.777)
C8: (1.737,106.224,-11.528)
O2': (-2.449,105.687,-12.242)
C6: (3.675,109.112,-10.798)
C5: (2.762,108.042,-11.068)
C4: (1.418,108.316,-10.950)
P: (2.112,104.948,-7.534)
C4': (-1.319,105.538,-9.360)
C2': (-1.114,105.580,-11.746)
C2: (1.815,110.420,-10.390)
N1: (3.141,110.311,-10.464)
N3: (0.872,109.497,-10.603)
N6: (5.018,108.997,-10.831)
N7: (2.955,106.717,-11.452)
N9: (0.757,107.135,-11.219)
O5': (0.927,105.495,-8.453)
O3': (-1.887,103.570,-10.623)
OP2: (1.790,105.294,-6.113)
C3': (-0.964,104.653,-10.544)
C1': (-0.687,106.926,-11.152)
C5': (-0.480,105.244,-8.145)
O4': (-1.039,106.904,-9.777)
C8: (1.737,106.224,-11.528)
O2': (-2.449,105.687,-12.242)
C6: (3.675,109.112,-10.798)
C5: (2.762,108.042,-11.068)
C4: (1.418,108.316,-10.950)
P: (2.112,104.948,-7.534)
C4': (-1.319,105.538,-9.360)
C2': (-1.114,105.580,-11.746)
C2: (1.815,110.420,-10.390)
N1: (3.141,110.311,-10.464)
N3: (0.872,109.497,-10.603)
N6: (5.018,108.997,-10.831)
N7: (2.955,106.717,-11.452)
N9: (0.757,107.135,-11.219)
O5': (0.927,105.495,-8.453)
O3': (-1.887,103.570,-10.623)
OP1: (-0.048,101.765,-10.591)
OP2: (-2.607,101.214,-10.391)
C3': (-4.603,101.667,-6.660)
C1': (-3.387,99.828,-5.719)
C5': (-2.510,102.651,-7.734)
O6: (-2.815,100.765,0.187)
O4': (-2.548,100.486,-6.657)
C8: (-1.871,100.966,-4.002)
C2: (-5.021,98.784,-1.883)
C6: (-3.290,100.242,-0.858)
C5: (-2.847,100.409,-2.193)
C4: (-3.550,99.780,-3.211)
P: (-1.441,102.115,-10.078)
C4': (-3.334,101.426,-7.456)
C2': (-4.836,100.317,-5.972)
O2': (-5.522,99.380,-6.807)
N1: (-4.403,99.384,-0.790)
N2: (-6.094,97.925,-1.647)
N3: (-4.628,98.971,-3.128)
N7: (-1.783,101.135,-2.703)
N9: (-2.941,100.168,-4.370)
O5': (-1.327,102.299,-8.492)
O3': (-5.673,102.042,-7.543)
OP2: (-2.607,101.214,-10.391)
C3': (-4.603,101.667,-6.660)
C1': (-3.387,99.828,-5.719)
C5': (-2.510,102.651,-7.734)
O6: (-2.815,100.765,0.187)
O4': (-2.548,100.486,-6.657)
C8: (-1.871,100.966,-4.002)
C2: (-5.021,98.784,-1.883)
C6: (-3.290,100.242,-0.858)
C5: (-2.847,100.409,-2.193)
C4: (-3.550,99.780,-3.211)
P: (-1.441,102.115,-10.078)
C4': (-3.334,101.426,-7.456)
C2': (-4.836,100.317,-5.972)
O2': (-5.522,99.380,-6.807)
N1: (-4.403,99.384,-0.790)
N2: (-6.094,97.925,-1.647)
N3: (-4.628,98.971,-3.128)
N7: (-1.783,101.135,-2.703)
N9: (-2.941,100.168,-4.370)
O5': (-1.327,102.299,-8.492)
O3': (-5.673,102.042,-7.543)
Image (generated by PyMOL):