Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1ZDK:S5:S6
Extra
PDB:
ATOM 1 O3' G A 4 2.128 103.542 -7.812 0.50106.25 O
ATOM 2 P A A 5 2.127 105.146 -7.523 0.50100.98 P
ATOM 3 OP1 A A 5 3.407 105.712 -8.095 0.50101.14 O
ATOM 4 OP2 A A 5 1.823 105.379 -6.056 0.50 99.50 O
ATOM 5 O5' A A 5 0.917 105.684 -8.431 0.50 99.25 O
ATOM 6 C5' A A 5 -0.462 105.245 -8.198 0.50 96.74 C
ATOM 7 C4' A A 5 -1.336 105.584 -9.393 0.50 94.85 C
ATOM 8 O4' A A 5 -1.050 106.961 -9.750 0.50 93.38 O
ATOM 9 C3' A A 5 -1.072 104.765 -10.661 0.50 94.73 C
ATOM 10 O3' A A 5 -1.990 103.674 -10.791 0.50 96.11 O
ATOM 11 C2' A A 5 -1.282 105.780 -11.774 0.50 92.63 C
ATOM 12 O2' A A 5 -2.652 105.996 -12.059 0.50 90.52 O
ATOM 13 C1' A A 5 -0.723 107.043 -11.122 0.50 92.10 C
ATOM 14 N9 A A 5 0.735 107.170 -11.217 0.50 90.54 N
ATOM 15 C8 A A 5 1.674 106.241 -11.620 0.50 89.59 C
ATOM 16 N7 A A 5 2.910 106.692 -11.596 0.50 88.96 N
ATOM 17 C5 A A 5 2.780 108.006 -11.148 0.50 88.72 C
ATOM 18 C6 A A 5 3.724 109.041 -10.906 0.50 88.62 C
ATOM 19 N6 A A 5 5.048 108.913 -11.102 0.50 86.16 N
ATOM 20 N1 A A 5 3.251 110.235 -10.448 0.50 89.48 N
ATOM 21 C2 A A 5 1.925 110.373 -10.260 0.50 89.31 C
ATOM 22 N3 A A 5 0.946 109.482 -10.463 0.50 90.16 N
ATOM 23 C4 A A 5 1.446 108.307 -10.905 0.50 89.74 C
ATOM 24 P G A 6 -1.585 102.213 -10.237 0.50 97.60 P
ATOM 25 OP1 G A 6 -0.232 101.813 -10.736 0.50 98.42 O
ATOM 26 OP2 G A 6 -2.767 101.321 -10.480 0.50 97.06 O
ATOM 27 O5' G A 6 -1.459 102.446 -8.664 0.50 97.05 O
TER
ATOM 1 O3' A B 5 -1.990 103.674 -10.791 0.50 96.11 O
ATOM 2 P G B 6 -1.585 102.213 -10.237 0.50 97.60 P
ATOM 3 OP1 G B 6 -0.232 101.813 -10.736 0.50 98.42 O
ATOM 4 OP2 G B 6 -2.767 101.321 -10.480 0.50 97.06 O
ATOM 5 O5' G B 6 -1.459 102.446 -8.664 0.50 97.05 O
ATOM 6 C5' G B 6 -2.632 102.722 -7.885 0.50 94.74 C
ATOM 7 C4' G B 6 -3.420 101.453 -7.712 0.50 93.06 C
ATOM 8 O4' G B 6 -2.595 100.486 -7.006 0.50 93.64 O
ATOM 9 C3' G B 6 -4.676 101.596 -6.881 0.50 91.40 C
ATOM 10 O3' G B 6 -5.765 102.018 -7.711 0.50 89.31 O
ATOM 11 C2' G B 6 -4.849 100.195 -6.295 0.50 91.52 C
ATOM 12 O2' G B 6 -5.515 99.307 -7.179 0.50 89.24 O
ATOM 13 C1' G B 6 -3.386 99.761 -6.082 0.50 92.77 C
ATOM 14 N9 G B 6 -2.895 100.077 -4.738 0.50 93.44 N
ATOM 15 C8 G B 6 -1.708 100.706 -4.396 0.50 93.55 C
ATOM 16 N7 G B 6 -1.595 100.917 -3.108 0.50 94.11 N
ATOM 17 C5 G B 6 -2.766 100.388 -2.570 0.50 93.56 C
ATOM 18 C6 G B 6 -3.225 100.341 -1.229 0.50 93.04 C
ATOM 19 O6 G B 6 -2.685 100.807 -0.205 0.50 92.04 O
ATOM 20 N1 G B 6 -4.454 99.682 -1.138 0.50 93.05 N
ATOM 21 C2 G B 6 -5.157 99.144 -2.204 0.50 93.04 C
ATOM 22 N2 G B 6 -6.315 98.497 -1.919 0.50 92.28 N
ATOM 23 N3 G B 6 -4.753 99.218 -3.457 0.50 92.73 N
ATOM 24 C4 G B 6 -3.561 99.843 -3.568 0.50 93.44 C
ATOM 25 P G B 7 -6.557 103.379 -7.352 0.50 87.21 P
ATOM 26 OP1 G B 7 -7.228 103.909 -8.579 0.50 83.56 O
ATOM 27 OP2 G B 7 -5.602 104.251 -6.586 0.50 85.87 O
ATOM 28 O5' G B 7 -7.671 102.933 -6.297 0.50 88.91 O
TER
ATOM 2 P A A 5 2.127 105.146 -7.523 0.50100.98 P
ATOM 3 OP1 A A 5 3.407 105.712 -8.095 0.50101.14 O
ATOM 4 OP2 A A 5 1.823 105.379 -6.056 0.50 99.50 O
ATOM 5 O5' A A 5 0.917 105.684 -8.431 0.50 99.25 O
ATOM 6 C5' A A 5 -0.462 105.245 -8.198 0.50 96.74 C
ATOM 7 C4' A A 5 -1.336 105.584 -9.393 0.50 94.85 C
ATOM 8 O4' A A 5 -1.050 106.961 -9.750 0.50 93.38 O
ATOM 9 C3' A A 5 -1.072 104.765 -10.661 0.50 94.73 C
ATOM 10 O3' A A 5 -1.990 103.674 -10.791 0.50 96.11 O
ATOM 11 C2' A A 5 -1.282 105.780 -11.774 0.50 92.63 C
ATOM 12 O2' A A 5 -2.652 105.996 -12.059 0.50 90.52 O
ATOM 13 C1' A A 5 -0.723 107.043 -11.122 0.50 92.10 C
ATOM 14 N9 A A 5 0.735 107.170 -11.217 0.50 90.54 N
ATOM 15 C8 A A 5 1.674 106.241 -11.620 0.50 89.59 C
ATOM 16 N7 A A 5 2.910 106.692 -11.596 0.50 88.96 N
ATOM 17 C5 A A 5 2.780 108.006 -11.148 0.50 88.72 C
ATOM 18 C6 A A 5 3.724 109.041 -10.906 0.50 88.62 C
ATOM 19 N6 A A 5 5.048 108.913 -11.102 0.50 86.16 N
ATOM 20 N1 A A 5 3.251 110.235 -10.448 0.50 89.48 N
ATOM 21 C2 A A 5 1.925 110.373 -10.260 0.50 89.31 C
ATOM 22 N3 A A 5 0.946 109.482 -10.463 0.50 90.16 N
ATOM 23 C4 A A 5 1.446 108.307 -10.905 0.50 89.74 C
ATOM 24 P G A 6 -1.585 102.213 -10.237 0.50 97.60 P
ATOM 25 OP1 G A 6 -0.232 101.813 -10.736 0.50 98.42 O
ATOM 26 OP2 G A 6 -2.767 101.321 -10.480 0.50 97.06 O
ATOM 27 O5' G A 6 -1.459 102.446 -8.664 0.50 97.05 O
TER
ATOM 1 O3' A B 5 -1.990 103.674 -10.791 0.50 96.11 O
ATOM 2 P G B 6 -1.585 102.213 -10.237 0.50 97.60 P
ATOM 3 OP1 G B 6 -0.232 101.813 -10.736 0.50 98.42 O
ATOM 4 OP2 G B 6 -2.767 101.321 -10.480 0.50 97.06 O
ATOM 5 O5' G B 6 -1.459 102.446 -8.664 0.50 97.05 O
ATOM 6 C5' G B 6 -2.632 102.722 -7.885 0.50 94.74 C
ATOM 7 C4' G B 6 -3.420 101.453 -7.712 0.50 93.06 C
ATOM 8 O4' G B 6 -2.595 100.486 -7.006 0.50 93.64 O
ATOM 9 C3' G B 6 -4.676 101.596 -6.881 0.50 91.40 C
ATOM 10 O3' G B 6 -5.765 102.018 -7.711 0.50 89.31 O
ATOM 11 C2' G B 6 -4.849 100.195 -6.295 0.50 91.52 C
ATOM 12 O2' G B 6 -5.515 99.307 -7.179 0.50 89.24 O
ATOM 13 C1' G B 6 -3.386 99.761 -6.082 0.50 92.77 C
ATOM 14 N9 G B 6 -2.895 100.077 -4.738 0.50 93.44 N
ATOM 15 C8 G B 6 -1.708 100.706 -4.396 0.50 93.55 C
ATOM 16 N7 G B 6 -1.595 100.917 -3.108 0.50 94.11 N
ATOM 17 C5 G B 6 -2.766 100.388 -2.570 0.50 93.56 C
ATOM 18 C6 G B 6 -3.225 100.341 -1.229 0.50 93.04 C
ATOM 19 O6 G B 6 -2.685 100.807 -0.205 0.50 92.04 O
ATOM 20 N1 G B 6 -4.454 99.682 -1.138 0.50 93.05 N
ATOM 21 C2 G B 6 -5.157 99.144 -2.204 0.50 93.04 C
ATOM 22 N2 G B 6 -6.315 98.497 -1.919 0.50 92.28 N
ATOM 23 N3 G B 6 -4.753 99.218 -3.457 0.50 92.73 N
ATOM 24 C4 G B 6 -3.561 99.843 -3.568 0.50 93.44 C
ATOM 25 P G B 7 -6.557 103.379 -7.352 0.50 87.21 P
ATOM 26 OP1 G B 7 -7.228 103.909 -8.579 0.50 83.56 O
ATOM 27 OP2 G B 7 -5.602 104.251 -6.586 0.50 85.87 O
ATOM 28 O5' G B 7 -7.671 102.933 -6.297 0.50 88.91 O
TER
Atoms:
OP1: (3.407,105.712,-8.095)
OP2: (1.823,105.379,-6.056)
C3': (-1.072,104.765,-10.661)
C1': (-0.723,107.043,-11.122)
C5': (-0.462,105.245,-8.198)
O4': (-1.050,106.961,-9.750)
C8: (1.674,106.241,-11.620)
O2': (-2.652,105.996,-12.059)
C6: (3.724,109.041,-10.906)
C5: (2.780,108.006,-11.148)
C4: (1.446,108.307,-10.905)
P: (2.127,105.146,-7.523)
C4': (-1.336,105.584,-9.393)
C2': (-1.282,105.780,-11.774)
C2: (1.925,110.373,-10.260)
N1: (3.251,110.235,-10.448)
N3: (0.946,109.482,-10.463)
N6: (5.048,108.913,-11.102)
N7: (2.910,106.692,-11.596)
N9: (0.735,107.170,-11.217)
O5': (0.917,105.684,-8.431)
O3': (-1.990,103.674,-10.791)
OP2: (1.823,105.379,-6.056)
C3': (-1.072,104.765,-10.661)
C1': (-0.723,107.043,-11.122)
C5': (-0.462,105.245,-8.198)
O4': (-1.050,106.961,-9.750)
C8: (1.674,106.241,-11.620)
O2': (-2.652,105.996,-12.059)
C6: (3.724,109.041,-10.906)
C5: (2.780,108.006,-11.148)
C4: (1.446,108.307,-10.905)
P: (2.127,105.146,-7.523)
C4': (-1.336,105.584,-9.393)
C2': (-1.282,105.780,-11.774)
C2: (1.925,110.373,-10.260)
N1: (3.251,110.235,-10.448)
N3: (0.946,109.482,-10.463)
N6: (5.048,108.913,-11.102)
N7: (2.910,106.692,-11.596)
N9: (0.735,107.170,-11.217)
O5': (0.917,105.684,-8.431)
O3': (-1.990,103.674,-10.791)
OP1: (-0.232,101.813,-10.736)
OP2: (-2.767,101.321,-10.480)
C3': (-4.676,101.596,-6.881)
C1': (-3.386,99.761,-6.082)
C5': (-2.632,102.722,-7.885)
O6: (-2.685,100.807,-0.205)
O4': (-2.595,100.486,-7.006)
C8: (-1.708,100.706,-4.396)
C2: (-5.157,99.144,-2.204)
C6: (-3.225,100.341,-1.229)
C5: (-2.766,100.388,-2.570)
C4: (-3.561,99.843,-3.568)
P: (-1.585,102.213,-10.237)
C4': (-3.420,101.453,-7.712)
C2': (-4.849,100.195,-6.295)
O2': (-5.515,99.307,-7.179)
N1: (-4.454,99.682,-1.138)
N2: (-6.315,98.497,-1.919)
N3: (-4.753,99.218,-3.457)
N7: (-1.595,100.917,-3.108)
N9: (-2.895,100.077,-4.738)
O5': (-1.459,102.446,-8.664)
O3': (-5.765,102.018,-7.711)
OP2: (-2.767,101.321,-10.480)
C3': (-4.676,101.596,-6.881)
C1': (-3.386,99.761,-6.082)
C5': (-2.632,102.722,-7.885)
O6: (-2.685,100.807,-0.205)
O4': (-2.595,100.486,-7.006)
C8: (-1.708,100.706,-4.396)
C2: (-5.157,99.144,-2.204)
C6: (-3.225,100.341,-1.229)
C5: (-2.766,100.388,-2.570)
C4: (-3.561,99.843,-3.568)
P: (-1.585,102.213,-10.237)
C4': (-3.420,101.453,-7.712)
C2': (-4.849,100.195,-6.295)
O2': (-5.515,99.307,-7.179)
N1: (-4.454,99.682,-1.138)
N2: (-6.315,98.497,-1.919)
N3: (-4.753,99.218,-3.457)
N7: (-1.595,100.917,-3.108)
N9: (-2.895,100.077,-4.738)
O5': (-1.459,102.446,-8.664)
O3': (-5.765,102.018,-7.711)
Image (generated by PyMOL):