ClaRNA

Doublet info:

Details

Nucleotide types: GG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3KNI:A736:A771

Extra

PDB:
ATOM 1 O3' A A 735 38.209 -12.888 -7.071 1.00 37.53 O
ATOM 2 P G A 736 38.727 -14.299 -7.642 1.00 43.92 P
ATOM 3 OP1 G A 736 38.985 -14.164 -9.094 1.00 40.41 O
ATOM 4 OP2 G A 736 37.807 -15.348 -7.151 1.00 47.25 O
ATOM 5 O5' G A 736 40.093 -14.584 -6.883 1.00 50.38 O
ATOM 6 C5' G A 736 41.233 -13.775 -7.079 1.00 49.65 C
ATOM 7 C4' G A 736 42.346 -14.282 -6.214 1.00 47.42 C
ATOM 8 O4' G A 736 41.932 -14.087 -4.836 1.00 49.32 O
ATOM 9 C3' G A 736 42.612 -15.770 -6.413 1.00 49.44 C
ATOM 10 O3' G A 736 43.932 -16.264 -6.641 1.00 54.12 O
ATOM 11 C2' G A 736 42.093 -16.441 -5.141 1.00 46.65 C
ATOM 12 O2' G A 736 43.074 -17.324 -4.637 1.00 55.56 O
ATOM 13 C1' G A 736 41.994 -15.305 -4.123 1.00 46.58 C
ATOM 14 N9 G A 736 40.778 -15.453 -3.303 1.00 52.72 N
ATOM 15 C8 G A 736 39.522 -15.757 -3.782 1.00 49.15 C
ATOM 16 N7 G A 736 38.627 -15.864 -2.842 1.00 46.78 N
ATOM 17 C5 G A 736 39.316 -15.602 -1.666 1.00 47.11 C
ATOM 18 C6 G A 736 38.849 -15.552 -0.335 1.00 48.08 C
ATOM 19 O6 G A 736 37.690 -15.707 0.082 1.00 52.74 O
ATOM 20 N1 G A 736 39.871 -15.268 0.562 1.00 42.74 N
ATOM 21 C2 G A 736 41.172 -15.049 0.222 1.00 46.87 C
ATOM 22 N2 G A 736 42.012 -14.805 1.248 1.00 47.72 N
ATOM 23 N3 G A 736 41.625 -15.069 -1.028 1.00 50.95 N
ATOM 24 C4 G A 736 40.645 -15.351 -1.919 1.00 50.72 C
ATOM 25 P G A 737 45.162 -15.307 -7.039 1.00 47.11 P
ATOM 26 OP1 G A 737 45.698 -14.740 -5.778 1.00 38.88 O
ATOM 27 OP2 G A 737 44.908 -14.420 -8.207 1.00 44.97 O
ATOM 28 O5' G A 737 46.181 -16.425 -7.488 1.00 45.48 O
TER

ATOM 1 O3' U B 770 40.424 -20.407 -7.159 1.00 51.90 O
ATOM 2 P G B 771 41.963 -20.271 -6.723 1.00 51.62 P
ATOM 3 OP1 G B 771 42.186 -20.667 -5.307 1.00 47.99 O
ATOM 4 OP2 G B 771 42.398 -18.923 -7.176 1.00 43.13 O
ATOM 5 O5' G B 771 42.661 -21.349 -7.662 1.00 54.26 O
ATOM 6 C5' G B 771 42.892 -21.005 -9.005 1.00 49.99 C
ATOM 7 C4' G B 771 43.869 -21.936 -9.639 1.00 43.10 C
ATOM 8 O4' G B 771 43.313 -23.273 -9.681 1.00 45.65 O
ATOM 9 C3' G B 771 44.050 -21.520 -11.083 1.00 40.75 C
ATOM 10 O3' G B 771 45.136 -20.632 -11.181 1.00 39.73 O
ATOM 11 C2' G B 771 44.238 -22.833 -11.805 1.00 41.77 C
ATOM 12 O2' G B 771 45.534 -23.340 -11.653 1.00 41.56 O
ATOM 13 C1' G B 771 43.281 -23.726 -11.015 1.00 43.00 C
ATOM 14 N9 G B 771 41.895 -23.651 -11.455 1.00 50.15 N
ATOM 15 C8 G B 771 41.285 -22.668 -12.208 1.00 50.12 C
ATOM 16 N7 G B 771 40.030 -22.920 -12.453 1.00 56.08 N
ATOM 17 C5 G B 771 39.801 -24.128 -11.827 1.00 48.46 C
ATOM 18 C6 G B 771 38.659 -24.892 -11.778 1.00 50.72 C
ATOM 19 O6 G B 771 37.579 -24.668 -12.317 1.00 57.26 O
ATOM 20 N1 G B 771 38.843 -26.042 -11.024 1.00 55.44 N
ATOM 21 C2 G B 771 40.012 -26.405 -10.412 1.00 58.29 C
ATOM 22 N2 G B 771 39.992 -27.557 -9.727 1.00 58.25 N
ATOM 23 N3 G B 771 41.111 -25.694 -10.471 1.00 55.80 N
ATOM 24 C4 G B 771 40.936 -24.578 -11.189 1.00 50.80 C
ATOM 25 P A B 772 45.477 -19.978 -12.598 1.00 38.30 P
ATOM 26 OP1 A B 772 46.347 -18.793 -12.347 1.00 38.91 O
ATOM 27 OP2 A B 772 44.215 -19.811 -13.363 1.00 48.10 O
ATOM 28 O5' A B 772 46.278 -21.150 -13.328 1.00 42.09 O
TER

Atoms:
OP1: (38.985,-14.164,-9.094)
OP2: (37.807,-15.348,-7.151)
C3': (42.612,-15.770,-6.413)
C1': (41.994,-15.305,-4.123)
C5': (41.233,-13.775,-7.079)
O6: (37.690,-15.707,0.082)
O4': (41.932,-14.087,-4.836)
C8: (39.522,-15.757,-3.782)
C2: (41.172,-15.049,0.222)
C6: (38.849,-15.552,-0.335)
C5: (39.316,-15.602,-1.666)
C4: (40.645,-15.351,-1.919)
P: (38.727,-14.299,-7.642)
C4': (42.346,-14.282,-6.214)
C2': (42.093,-16.441,-5.141)
O2': (43.074,-17.324,-4.637)
N1: (39.871,-15.268,0.562)
N2: (42.012,-14.805,1.248)
N3: (41.625,-15.069,-1.028)
N7: (38.627,-15.864,-2.842)
N9: (40.778,-15.453,-3.303)
O5': (40.093,-14.584,-6.883)
O3': (43.932,-16.264,-6.641)
OP1: (42.186,-20.667,-5.307)
OP2: (42.398,-18.923,-7.176)
C3': (44.050,-21.520,-11.083)
C1': (43.281,-23.726,-11.015)
C5': (42.892,-21.005,-9.005)
O6: (37.579,-24.668,-12.317)
O4': (43.313,-23.273,-9.681)
C8: (41.285,-22.668,-12.208)
C2: (40.012,-26.405,-10.412)
C6: (38.659,-24.892,-11.778)
C5: (39.801,-24.128,-11.827)
C4: (40.936,-24.578,-11.189)
P: (41.963,-20.271,-6.723)
C4': (43.869,-21.936,-9.639)
C2': (44.238,-22.833,-11.805)
O2': (45.534,-23.340,-11.653)
N1: (38.843,-26.042,-11.024)
N2: (39.992,-27.557,-9.727)
N3: (41.111,-25.694,-10.471)
N7: (40.030,-22.920,-12.453)
N9: (41.895,-23.651,-11.455)
O5': (42.661,-21.349,-7.662)
O3': (45.136,-20.632,-11.181)
Image (generated by PyMOL):
PyMOL image
show in jmol