Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SD1:A78:A6
Extra
PDB:
ATOM 1 O3' G A 77 4.839 -24.032 18.349 1.00 38.85 O
ATOM 2 P C A 78 4.358 -25.326 19.171 1.00 38.50 P
ATOM 3 OP1 C A 78 5.562 -25.902 19.821 1.00 42.00 O
ATOM 4 OP2 C A 78 3.575 -26.174 18.244 1.00 28.86 O
ATOM 5 O5' C A 78 3.397 -24.696 20.272 1.00 43.19 O
ATOM 6 C5' C A 78 2.870 -25.486 21.325 1.00 34.40 C
ATOM 7 C4' C A 78 3.564 -25.199 22.630 1.00 36.60 C
ATOM 8 O4' C A 78 2.610 -24.606 23.558 1.00 31.20 O
ATOM 9 C3' C A 78 4.137 -26.425 23.339 1.00 32.39 C
ATOM 10 O3' C A 78 5.300 -26.043 24.077 1.00 32.58 O
ATOM 11 C2' C A 78 3.019 -26.783 24.307 1.00 34.58 C
ATOM 12 O2' C A 78 3.422 -27.568 25.408 1.00 40.84 O
ATOM 13 C1' C A 78 2.555 -25.392 24.731 1.00 33.41 C
ATOM 14 N1 C A 78 1.179 -25.348 25.273 1.00 29.61 N
ATOM 15 C2 C A 78 0.918 -24.447 26.307 1.00 26.91 C
ATOM 16 O2 C A 78 1.837 -23.711 26.695 1.00 26.71 O
ATOM 17 N3 C A 78 -0.322 -24.393 26.844 1.00 25.29 N
ATOM 18 C4 C A 78 -1.277 -25.206 26.392 1.00 28.05 C
ATOM 19 N4 C A 78 -2.485 -25.124 26.953 1.00 27.96 N
ATOM 20 C5 C A 78 -1.036 -26.142 25.343 1.00 28.74 C
ATOM 21 C6 C A 78 0.197 -26.185 24.822 1.00 31.33 C
ATOM 22 P A A 79 6.607 -26.981 24.076 1.00 45.37 P
ATOM 23 OP1 A A 79 7.591 -26.356 23.158 1.00 43.69 O
ATOM 24 OP2 A A 79 6.151 -28.369 23.799 1.00 30.95 O
ATOM 25 O5' A A 79 7.124 -26.871 25.577 1.00 40.63 O
TER
ATOM 1 O3' G B 5 -4.946 -27.551 17.575 1.00 35.83 O
ATOM 2 P U B 6 -4.438 -26.031 17.718 1.00 38.35 P
ATOM 3 OP1 U B 6 -5.431 -25.173 17.024 1.00 38.42 O
ATOM 4 OP2 U B 6 -3.025 -25.996 17.265 1.00 38.11 O
ATOM 5 O5' U B 6 -4.508 -25.778 19.288 1.00 36.34 O
ATOM 6 C5' U B 6 -5.718 -25.973 20.002 1.00 34.88 C
ATOM 7 C4' U B 6 -5.667 -25.336 21.368 1.00 31.69 C
ATOM 8 O4' U B 6 -4.462 -25.754 22.067 1.00 27.55 O
ATOM 9 C3' U B 6 -5.585 -23.817 21.403 1.00 28.36 C
ATOM 10 O3' U B 6 -6.825 -23.178 21.162 1.00 27.68 O
ATOM 11 C2' U B 6 -5.029 -23.569 22.795 1.00 30.00 C
ATOM 12 O2' U B 6 -6.028 -23.784 23.780 1.00 32.11 O
ATOM 13 C1' U B 6 -4.005 -24.698 22.895 1.00 31.28 C
ATOM 14 N1 U B 6 -2.682 -24.256 22.417 1.00 27.06 N
ATOM 15 C2 U B 6 -2.014 -23.394 23.256 1.00 26.02 C
ATOM 16 O2 U B 6 -2.464 -23.045 24.332 1.00 27.18 O
ATOM 17 N3 U B 6 -0.798 -22.964 22.799 1.00 27.14 N
ATOM 18 C4 U B 6 -0.205 -23.296 21.602 1.00 27.62 C
ATOM 19 O4 U B 6 0.898 -22.821 21.339 1.00 28.93 O
ATOM 20 C5 U B 6 -0.967 -24.186 20.778 1.00 30.97 C
ATOM 21 C6 U B 6 -2.159 -24.623 21.200 1.00 30.30 C
ATOM 22 P A B 7 -6.861 -21.664 20.617 1.00 26.03 P
ATOM 23 OP1 A B 7 -8.287 -21.294 20.460 1.00 27.72 O
ATOM 24 OP2 A B 7 -5.973 -21.600 19.429 1.00 27.27 O
ATOM 25 O5' A B 7 -6.213 -20.837 21.812 1.00 25.45 O
TER
ATOM 2 P C A 78 4.358 -25.326 19.171 1.00 38.50 P
ATOM 3 OP1 C A 78 5.562 -25.902 19.821 1.00 42.00 O
ATOM 4 OP2 C A 78 3.575 -26.174 18.244 1.00 28.86 O
ATOM 5 O5' C A 78 3.397 -24.696 20.272 1.00 43.19 O
ATOM 6 C5' C A 78 2.870 -25.486 21.325 1.00 34.40 C
ATOM 7 C4' C A 78 3.564 -25.199 22.630 1.00 36.60 C
ATOM 8 O4' C A 78 2.610 -24.606 23.558 1.00 31.20 O
ATOM 9 C3' C A 78 4.137 -26.425 23.339 1.00 32.39 C
ATOM 10 O3' C A 78 5.300 -26.043 24.077 1.00 32.58 O
ATOM 11 C2' C A 78 3.019 -26.783 24.307 1.00 34.58 C
ATOM 12 O2' C A 78 3.422 -27.568 25.408 1.00 40.84 O
ATOM 13 C1' C A 78 2.555 -25.392 24.731 1.00 33.41 C
ATOM 14 N1 C A 78 1.179 -25.348 25.273 1.00 29.61 N
ATOM 15 C2 C A 78 0.918 -24.447 26.307 1.00 26.91 C
ATOM 16 O2 C A 78 1.837 -23.711 26.695 1.00 26.71 O
ATOM 17 N3 C A 78 -0.322 -24.393 26.844 1.00 25.29 N
ATOM 18 C4 C A 78 -1.277 -25.206 26.392 1.00 28.05 C
ATOM 19 N4 C A 78 -2.485 -25.124 26.953 1.00 27.96 N
ATOM 20 C5 C A 78 -1.036 -26.142 25.343 1.00 28.74 C
ATOM 21 C6 C A 78 0.197 -26.185 24.822 1.00 31.33 C
ATOM 22 P A A 79 6.607 -26.981 24.076 1.00 45.37 P
ATOM 23 OP1 A A 79 7.591 -26.356 23.158 1.00 43.69 O
ATOM 24 OP2 A A 79 6.151 -28.369 23.799 1.00 30.95 O
ATOM 25 O5' A A 79 7.124 -26.871 25.577 1.00 40.63 O
TER
ATOM 1 O3' G B 5 -4.946 -27.551 17.575 1.00 35.83 O
ATOM 2 P U B 6 -4.438 -26.031 17.718 1.00 38.35 P
ATOM 3 OP1 U B 6 -5.431 -25.173 17.024 1.00 38.42 O
ATOM 4 OP2 U B 6 -3.025 -25.996 17.265 1.00 38.11 O
ATOM 5 O5' U B 6 -4.508 -25.778 19.288 1.00 36.34 O
ATOM 6 C5' U B 6 -5.718 -25.973 20.002 1.00 34.88 C
ATOM 7 C4' U B 6 -5.667 -25.336 21.368 1.00 31.69 C
ATOM 8 O4' U B 6 -4.462 -25.754 22.067 1.00 27.55 O
ATOM 9 C3' U B 6 -5.585 -23.817 21.403 1.00 28.36 C
ATOM 10 O3' U B 6 -6.825 -23.178 21.162 1.00 27.68 O
ATOM 11 C2' U B 6 -5.029 -23.569 22.795 1.00 30.00 C
ATOM 12 O2' U B 6 -6.028 -23.784 23.780 1.00 32.11 O
ATOM 13 C1' U B 6 -4.005 -24.698 22.895 1.00 31.28 C
ATOM 14 N1 U B 6 -2.682 -24.256 22.417 1.00 27.06 N
ATOM 15 C2 U B 6 -2.014 -23.394 23.256 1.00 26.02 C
ATOM 16 O2 U B 6 -2.464 -23.045 24.332 1.00 27.18 O
ATOM 17 N3 U B 6 -0.798 -22.964 22.799 1.00 27.14 N
ATOM 18 C4 U B 6 -0.205 -23.296 21.602 1.00 27.62 C
ATOM 19 O4 U B 6 0.898 -22.821 21.339 1.00 28.93 O
ATOM 20 C5 U B 6 -0.967 -24.186 20.778 1.00 30.97 C
ATOM 21 C6 U B 6 -2.159 -24.623 21.200 1.00 30.30 C
ATOM 22 P A B 7 -6.861 -21.664 20.617 1.00 26.03 P
ATOM 23 OP1 A B 7 -8.287 -21.294 20.460 1.00 27.72 O
ATOM 24 OP2 A B 7 -5.973 -21.600 19.429 1.00 27.27 O
ATOM 25 O5' A B 7 -6.213 -20.837 21.812 1.00 25.45 O
TER
Atoms:
C2: (0.918,-24.447,26.307)
OP1: (5.562,-25.902,19.821)
OP2: (3.575,-26.174,18.244)
C4: (-1.277,-25.206,26.392)
O5': (3.397,-24.696,20.272)
C3': (4.137,-26.425,23.339)
C1': (2.555,-25.392,24.731)
O4': (2.610,-24.606,23.558)
C5': (2.870,-25.486,21.325)
P: (4.358,-25.326,19.171)
O2: (1.837,-23.711,26.695)
C4': (3.564,-25.199,22.630)
C2': (3.019,-26.783,24.307)
O2': (3.422,-27.568,25.408)
N1: (1.179,-25.348,25.273)
N3: (-0.322,-24.393,26.844)
N4: (-2.485,-25.124,26.953)
C6: (0.197,-26.185,24.822)
C5: (-1.036,-26.142,25.343)
O3': (5.300,-26.043,24.077)
OP1: (5.562,-25.902,19.821)
OP2: (3.575,-26.174,18.244)
C4: (-1.277,-25.206,26.392)
O5': (3.397,-24.696,20.272)
C3': (4.137,-26.425,23.339)
C1': (2.555,-25.392,24.731)
O4': (2.610,-24.606,23.558)
C5': (2.870,-25.486,21.325)
P: (4.358,-25.326,19.171)
O2: (1.837,-23.711,26.695)
C4': (3.564,-25.199,22.630)
C2': (3.019,-26.783,24.307)
O2': (3.422,-27.568,25.408)
N1: (1.179,-25.348,25.273)
N3: (-0.322,-24.393,26.844)
N4: (-2.485,-25.124,26.953)
C6: (0.197,-26.185,24.822)
C5: (-1.036,-26.142,25.343)
O3': (5.300,-26.043,24.077)
C4: (-0.205,-23.296,21.602)
N3: (-0.798,-22.964,22.799)
OP1: (-5.431,-25.173,17.024)
OP2: (-3.025,-25.996,17.265)
C2: (-2.014,-23.394,23.256)
C1': (-4.005,-24.698,22.895)
C3': (-5.585,-23.817,21.403)
O5': (-4.508,-25.778,19.288)
O4': (-4.462,-25.754,22.067)
C5': (-5.718,-25.973,20.002)
P: (-4.438,-26.031,17.718)
C4': (-5.667,-25.336,21.368)
C2': (-5.029,-23.569,22.795)
O2': (-6.028,-23.784,23.780)
N1: (-2.682,-24.256,22.417)
O4: (0.898,-22.821,21.339)
O2: (-2.464,-23.045,24.332)
C6: (-2.159,-24.623,21.200)
C5: (-0.967,-24.186,20.778)
O3': (-6.825,-23.178,21.162)
N3: (-0.798,-22.964,22.799)
OP1: (-5.431,-25.173,17.024)
OP2: (-3.025,-25.996,17.265)
C2: (-2.014,-23.394,23.256)
C1': (-4.005,-24.698,22.895)
C3': (-5.585,-23.817,21.403)
O5': (-4.508,-25.778,19.288)
O4': (-4.462,-25.754,22.067)
C5': (-5.718,-25.973,20.002)
P: (-4.438,-26.031,17.718)
C4': (-5.667,-25.336,21.368)
C2': (-5.029,-23.569,22.795)
O2': (-6.028,-23.784,23.780)
N1: (-2.682,-24.256,22.417)
O4: (0.898,-22.821,21.339)
O2: (-2.464,-23.045,24.332)
C6: (-2.159,-24.623,21.200)
C5: (-0.967,-24.186,20.778)
O3': (-6.825,-23.178,21.162)
Image (generated by PyMOL):