ClaRNA

Doublet info:

Details

Nucleotide types: CU
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3SD3:A78:A6

Extra

PDB:
ATOM 1 O3' G A 77 18.003 -23.818 19.041 1.00 42.18 O
ATOM 2 P C A 78 17.698 -25.370 19.341 1.00 40.90 P
ATOM 3 OP1 C A 78 18.813 -26.157 18.759 1.00 40.75 O
ATOM 4 OP2 C A 78 16.317 -25.643 18.876 1.00 41.56 O
ATOM 5 O5' C A 78 17.760 -25.445 20.931 1.00 41.36 O
ATOM 6 C5' C A 78 16.820 -24.744 21.744 1.00 40.33 C
ATOM 7 C4' C A 78 17.309 -24.632 23.167 1.00 36.48 C
ATOM 8 O4' C A 78 16.229 -24.151 24.025 1.00 32.74 O
ATOM 9 C3' C A 78 17.801 -25.948 23.790 1.00 37.27 C
ATOM 10 O3' C A 78 18.970 -25.706 24.572 1.00 37.92 O
ATOM 11 C2' C A 78 16.649 -26.337 24.709 1.00 36.92 C
ATOM 12 O2' C A 78 17.013 -27.162 25.793 1.00 41.36 O
ATOM 13 C1' C A 78 16.169 -24.970 25.173 1.00 35.34 C
ATOM 14 N1 C A 78 14.791 -24.971 25.723 1.00 34.84 N
ATOM 15 C2 C A 78 14.518 -24.210 26.870 1.00 35.43 C
ATOM 16 O2 C A 78 15.410 -23.496 27.346 1.00 38.21 O
ATOM 17 N3 C A 78 13.282 -24.239 27.422 1.00 30.19 N
ATOM 18 C4 C A 78 12.344 -25.018 26.885 1.00 31.57 C
ATOM 19 N4 C A 78 11.138 -25.026 27.452 1.00 37.63 N
ATOM 20 C5 C A 78 12.595 -25.817 25.735 1.00 30.36 C
ATOM 21 C6 C A 78 13.824 -25.783 25.200 1.00 32.16 C
ATOM 22 P A A 79 20.239 -26.685 24.447 1.00 54.23 P
ATOM 23 OP1 A A 79 21.189 -26.047 23.502 1.00 56.65 O
ATOM 24 OP2 A A 79 19.719 -28.037 24.132 1.00 53.05 O
ATOM 25 O5' A A 79 20.846 -26.669 25.920 1.00 49.21 O
TER

ATOM 1 O3' G B 5 8.664 -27.239 18.013 1.00 33.73 O
ATOM 2 P U B 6 9.147 -25.717 18.220 1.00 38.88 P
ATOM 3 OP1 U B 6 8.106 -24.847 17.626 1.00 38.83 O
ATOM 4 OP2 U B 6 10.531 -25.623 17.702 1.00 33.83 O
ATOM 5 O5' U B 6 9.146 -25.553 19.808 1.00 36.63 O
ATOM 6 C5' U B 6 7.950 -25.723 20.554 1.00 33.68 C
ATOM 7 C4' U B 6 8.040 -25.094 21.924 1.00 33.75 C
ATOM 8 O4' U B 6 9.274 -25.496 22.582 1.00 33.88 O
ATOM 9 C3' U B 6 8.105 -23.575 21.982 1.00 33.75 C
ATOM 10 O3' U B 6 6.865 -22.931 21.736 1.00 33.69 O
ATOM 11 C2' U B 6 8.644 -23.356 23.384 1.00 33.91 C
ATOM 12 O2' U B 6 7.648 -23.646 24.355 1.00 33.98 O
ATOM 13 C1' U B 6 9.705 -24.453 23.443 1.00 34.36 C
ATOM 14 N1 U B 6 11.008 -23.951 22.968 1.00 34.45 N
ATOM 15 C2 U B 6 11.699 -23.144 23.848 1.00 34.78 C
ATOM 16 O2 U B 6 11.286 -22.876 24.964 1.00 35.22 O
ATOM 17 N3 U B 6 12.891 -22.661 23.377 1.00 36.86 N
ATOM 18 C4 U B 6 13.443 -22.893 22.136 1.00 37.59 C
ATOM 19 O4 U B 6 14.530 -22.388 21.864 1.00 34.42 O
ATOM 20 C5 U B 6 12.662 -23.731 21.277 1.00 37.73 C
ATOM 21 C6 U B 6 11.490 -24.213 21.707 1.00 35.97 C
ATOM 22 P A B 7 6.841 -21.427 21.155 1.00 33.67 P
ATOM 23 OP1 A B 7 5.420 -21.066 20.937 1.00 33.64 O
ATOM 24 OP2 A B 7 7.770 -21.384 20.004 1.00 35.86 O
ATOM 25 O5' A B 7 7.439 -20.570 22.354 1.00 35.95 O
TER

Atoms:
C2: (14.518,-24.210,26.870)
OP1: (18.813,-26.157,18.759)
OP2: (16.317,-25.643,18.876)
C4: (12.344,-25.018,26.885)
O5': (17.760,-25.445,20.931)
C3': (17.801,-25.948,23.790)
C1': (16.169,-24.970,25.173)
O4': (16.229,-24.151,24.025)
C5': (16.820,-24.744,21.744)
P: (17.698,-25.370,19.341)
O2: (15.410,-23.496,27.346)
C4': (17.309,-24.632,23.167)
C2': (16.649,-26.337,24.709)
O2': (17.013,-27.162,25.793)
N1: (14.791,-24.971,25.723)
N3: (13.282,-24.239,27.422)
N4: (11.138,-25.026,27.452)
C6: (13.824,-25.783,25.200)
C5: (12.595,-25.817,25.735)
O3': (18.970,-25.706,24.572)
C4: (13.443,-22.893,22.136)
N3: (12.891,-22.661,23.377)
OP1: (8.106,-24.847,17.626)
OP2: (10.531,-25.623,17.702)
C2: (11.699,-23.144,23.848)
C1': (9.705,-24.453,23.443)
C3': (8.105,-23.575,21.982)
O5': (9.146,-25.553,19.808)
O4': (9.274,-25.496,22.582)
C5': (7.950,-25.723,20.554)
P: (9.147,-25.717,18.220)
C4': (8.040,-25.094,21.924)
C2': (8.644,-23.356,23.384)
O2': (7.648,-23.646,24.355)
N1: (11.008,-23.951,22.968)
O4: (14.530,-22.388,21.864)
O2: (11.286,-22.876,24.964)
C6: (11.490,-24.213,21.707)
C5: (12.662,-23.731,21.277)
O3': (6.865,-22.931,21.736)
Image (generated by PyMOL):
PyMOL image
show in jmol