ClaRNA

Doublet info:

Details

Nucleotide types: AU
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1FXL:B4:B3

Extra

PDB:
ATOM 1 O3' U A 3 12.161 15.082 -2.912 1.00 22.11 O
ATOM 2 P A A 4 11.107 13.888 -2.775 1.00 21.21 P
ATOM 3 OP1 A A 4 9.801 14.428 -3.238 1.00 20.08 O
ATOM 4 OP2 A A 4 11.213 13.284 -1.426 1.00 19.61 O
ATOM 5 O5' A A 4 11.645 12.816 -3.819 1.00 22.38 O
ATOM 6 C5' A A 4 11.818 13.160 -5.190 1.00 25.56 C
ATOM 7 C4' A A 4 12.734 12.168 -5.858 1.00 27.83 C
ATOM 8 O4' A A 4 14.097 12.379 -5.417 1.00 27.36 O
ATOM 9 C3' A A 4 12.452 10.718 -5.514 1.00 29.23 C
ATOM 10 O3' A A 4 11.441 10.214 -6.363 1.00 30.47 O
ATOM 11 C2' A A 4 13.788 10.055 -5.814 1.00 31.27 C
ATOM 12 O2' A A 4 13.963 9.760 -7.184 1.00 35.67 O
ATOM 13 C1' A A 4 14.771 11.134 -5.355 1.00 30.30 C
ATOM 14 N9 A A 4 15.187 10.910 -3.976 1.00 31.00 N
ATOM 15 C8 A A 4 14.475 11.139 -2.823 1.00 31.53 C
ATOM 16 N7 A A 4 15.113 10.790 -1.733 1.00 32.05 N
ATOM 17 C5 A A 4 16.327 10.309 -2.202 1.00 31.91 C
ATOM 18 C6 A A 4 17.445 9.784 -1.546 1.00 34.42 C
ATOM 19 N6 A A 4 17.515 9.624 -0.222 1.00 35.95 N
ATOM 20 N1 A A 4 18.502 9.414 -2.306 1.00 36.95 N
ATOM 21 C2 A A 4 18.418 9.557 -3.639 1.00 35.02 C
ATOM 22 N3 A A 4 17.414 10.028 -4.370 1.00 31.87 N
ATOM 23 C4 A A 4 16.389 10.390 -3.580 1.00 31.17 C
ATOM 24 P U A 5 10.027 9.795 -5.741 1.00 30.91 P
ATOM 25 OP1 U A 5 9.037 10.821 -6.165 1.00 28.83 O
ATOM 26 OP2 U A 5 10.214 9.512 -4.292 1.00 31.74 O
ATOM 27 O5' U A 5 9.716 8.421 -6.485 1.00 27.01 O
TER

ATOM 1 O3' U B 2 11.461 15.833 2.283 1.00 26.98 O
ATOM 2 P U B 3 12.811 16.733 2.268 1.00 28.78 P
ATOM 3 OP1 U B 3 13.840 15.964 3.008 1.00 27.31 O
ATOM 4 OP2 U B 3 12.468 18.116 2.702 1.00 30.31 O
ATOM 5 O5' U B 3 13.283 16.823 0.751 1.00 27.35 O
ATOM 6 C5' U B 3 13.433 15.659 -0.033 1.00 27.75 C
ATOM 7 C4' U B 3 13.752 16.033 -1.456 1.00 26.88 C
ATOM 8 O4' U B 3 15.170 16.313 -1.568 1.00 26.32 O
ATOM 9 C3' U B 3 13.482 14.907 -2.433 1.00 24.62 C
ATOM 10 O3' U B 3 12.161 15.082 -2.912 1.00 22.11 O
ATOM 11 C2' U B 3 14.507 15.139 -3.535 1.00 26.90 C
ATOM 12 O2' U B 3 14.060 16.021 -4.542 1.00 30.21 O
ATOM 13 C1' U B 3 15.678 15.745 -2.760 1.00 28.86 C
ATOM 14 N1 U B 3 16.701 14.756 -2.397 1.00 32.26 N
ATOM 15 C2 U B 3 17.595 14.368 -3.378 1.00 33.96 C
ATOM 16 O2 U B 3 17.543 14.782 -4.524 1.00 35.05 O
ATOM 17 N3 U B 3 18.551 13.476 -2.969 1.00 35.54 N
ATOM 18 C4 U B 3 18.698 12.937 -1.706 1.00 37.38 C
ATOM 19 O4 U B 3 19.648 12.184 -1.478 1.00 39.11 O
ATOM 20 C5 U B 3 17.718 13.370 -0.752 1.00 35.53 C
ATOM 21 C6 U B 3 16.776 14.242 -1.122 1.00 33.08 C
ATOM 22 P A B 4 11.107 13.888 -2.775 1.00 21.21 P
ATOM 23 OP1 A B 4 9.801 14.428 -3.238 1.00 20.08 O
ATOM 24 OP2 A B 4 11.213 13.284 -1.426 1.00 19.61 O
ATOM 25 O5' A B 4 11.645 12.816 -3.819 1.00 22.38 O
TER

Atoms:
OP1: (9.801,14.428,-3.238)
OP2: (11.213,13.284,-1.426)
C3': (12.452,10.718,-5.514)
C1': (14.771,11.134,-5.355)
C5': (11.818,13.160,-5.190)
O4': (14.097,12.379,-5.417)
C8: (14.475,11.139,-2.823)
O2': (13.963,9.760,-7.184)
C6: (17.445,9.784,-1.546)
C5: (16.327,10.309,-2.202)
C4: (16.389,10.390,-3.580)
P: (11.107,13.888,-2.775)
C4': (12.734,12.168,-5.858)
C2': (13.788,10.055,-5.814)
C2: (18.418,9.557,-3.639)
N1: (18.502,9.414,-2.306)
N3: (17.414,10.028,-4.370)
N6: (17.515,9.624,-0.222)
N7: (15.113,10.790,-1.733)
N9: (15.187,10.910,-3.976)
O5': (11.645,12.816,-3.819)
O3': (11.441,10.214,-6.363)
C4: (18.698,12.937,-1.706)
N3: (18.551,13.476,-2.969)
OP1: (13.840,15.964,3.008)
OP2: (12.468,18.116,2.702)
C2: (17.595,14.368,-3.378)
C1': (15.678,15.745,-2.760)
C3': (13.482,14.907,-2.433)
O5': (13.283,16.823,0.751)
O4': (15.170,16.313,-1.568)
C5': (13.433,15.659,-0.033)
P: (12.811,16.733,2.268)
C4': (13.752,16.033,-1.456)
C2': (14.507,15.139,-3.535)
O2': (14.060,16.021,-4.542)
N1: (16.701,14.756,-2.397)
O4: (19.648,12.184,-1.478)
O2: (17.543,14.782,-4.524)
C6: (16.776,14.242,-1.122)
C5: (17.718,13.370,-0.752)
O3': (12.161,15.082,-2.912)
Image (generated by PyMOL):
PyMOL image
show in jmol