Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A1388:A1387
Extra
PDB:
ATOM 1 O3' U A1387 -8.956 -52.876 22.009 1.00 0.01 O
ATOM 2 P A A1388 -8.961 -51.467 21.221 1.00 0.01 P
ATOM 3 OP1 A A1388 -10.316 -50.908 21.353 1.00 0.01 O
ATOM 4 OP2 A A1388 -8.422 -51.707 19.870 1.00 0.01 O
ATOM 5 O5' A A1388 -7.937 -50.605 22.071 1.00 0.01 O
ATOM 6 C5' A A1388 -7.007 -49.740 21.448 1.00 0.01 C
ATOM 7 C4' A A1388 -5.933 -49.350 22.410 1.00 0.01 C
ATOM 8 O4' A A1388 -4.995 -50.414 22.539 1.00 0.01 O
ATOM 9 C3' A A1388 -5.078 -48.156 22.033 1.00 0.01 C
ATOM 10 O3' A A1388 -5.679 -46.931 22.403 1.00 0.01 O
ATOM 11 C2' A A1388 -3.761 -48.410 22.772 1.00 0.01 C
ATOM 12 O2' A A1388 -3.714 -47.677 23.974 1.00 0.01 O
ATOM 13 C1' A A1388 -3.838 -49.892 23.120 1.00 0.01 C
ATOM 14 N9 A A1388 -2.660 -50.659 22.695 1.00 0.10 N
ATOM 15 C8 A A1388 -1.816 -50.660 21.627 1.00 0.10 C
ATOM 16 N7 A A1388 -0.870 -51.560 21.748 1.00 0.10 N
ATOM 17 C5 A A1388 -1.108 -52.157 22.967 1.00 0.10 C
ATOM 18 C6 A A1388 -0.482 -53.185 23.704 1.00 0.10 C
ATOM 19 N6 A A1388 0.599 -53.890 23.325 1.00 0.10 N
ATOM 20 N1 A A1388 -1.024 -53.512 24.899 1.00 0.10 N
ATOM 21 C2 A A1388 -2.102 -52.823 25.303 1.00 0.10 C
ATOM 22 N3 A A1388 -2.767 -51.845 24.706 1.00 0.10 N
ATOM 23 C4 A A1388 -2.202 -51.588 23.539 1.00 0.10 C
ATOM 24 P U A1389 -6.266 -45.943 21.287 1.00 12.13 P
ATOM 25 OP1 U A1389 -7.639 -45.605 21.697 1.00 12.13 O
ATOM 26 OP2 U A1389 -6.045 -46.582 19.965 1.00 12.13 O
ATOM 27 O5' U A1389 -5.350 -44.667 21.433 1.00 12.13 O
TER
ATOM 1 O3' A B1386 -8.185 -57.422 19.012 1.00 0.01 O
ATOM 2 P U B1387 -7.505 -55.997 19.196 1.00 0.01 P
ATOM 3 OP1 U B1387 -8.539 -54.991 18.933 1.00 0.01 O
ATOM 4 OP2 U B1387 -6.272 -55.994 18.370 1.00 0.01 O
ATOM 5 O5' U B1387 -7.144 -55.985 20.733 1.00 0.01 O
ATOM 6 C5' U B1387 -8.176 -56.059 21.703 1.00 0.01 C
ATOM 7 C4' U B1387 -8.018 -55.006 22.763 1.00 0.01 C
ATOM 8 O4' U B1387 -6.886 -55.342 23.583 1.00 0.01 O
ATOM 9 C3' U B1387 -7.750 -53.593 22.262 1.00 0.01 C
ATOM 10 O3' U B1387 -8.956 -52.876 22.009 1.00 0.01 O
ATOM 11 C2' U B1387 -6.913 -52.999 23.374 1.00 0.01 C
ATOM 12 O2' U B1387 -7.742 -52.585 24.456 1.00 0.01 O
ATOM 13 C1' U B1387 -6.106 -54.212 23.828 1.00 0.01 C
ATOM 14 N1 U B1387 -4.797 -54.388 23.105 1.00 0.01 N
ATOM 15 C2 U B1387 -3.999 -55.308 23.713 1.00 0.01 C
ATOM 16 O2 U B1387 -4.335 -55.854 24.716 1.00 0.01 O
ATOM 17 N3 U B1387 -2.797 -55.584 23.192 1.00 0.01 N
ATOM 18 C4 U B1387 -2.280 -55.056 22.054 1.00 0.01 C
ATOM 19 O4 U B1387 -1.148 -55.451 21.692 1.00 0.01 O
ATOM 20 C5 U B1387 -3.150 -54.095 21.429 1.00 0.01 C
ATOM 21 C6 U B1387 -4.344 -53.798 21.965 1.00 0.01 C
ATOM 22 P A B1388 -8.961 -51.467 21.221 1.00 0.01 P
ATOM 23 OP1 A B1388 -10.316 -50.908 21.353 1.00 0.01 O
ATOM 24 OP2 A B1388 -8.422 -51.707 19.870 1.00 0.01 O
ATOM 25 O5' A B1388 -7.937 -50.605 22.071 1.00 0.01 O
TER
ATOM 2 P A A1388 -8.961 -51.467 21.221 1.00 0.01 P
ATOM 3 OP1 A A1388 -10.316 -50.908 21.353 1.00 0.01 O
ATOM 4 OP2 A A1388 -8.422 -51.707 19.870 1.00 0.01 O
ATOM 5 O5' A A1388 -7.937 -50.605 22.071 1.00 0.01 O
ATOM 6 C5' A A1388 -7.007 -49.740 21.448 1.00 0.01 C
ATOM 7 C4' A A1388 -5.933 -49.350 22.410 1.00 0.01 C
ATOM 8 O4' A A1388 -4.995 -50.414 22.539 1.00 0.01 O
ATOM 9 C3' A A1388 -5.078 -48.156 22.033 1.00 0.01 C
ATOM 10 O3' A A1388 -5.679 -46.931 22.403 1.00 0.01 O
ATOM 11 C2' A A1388 -3.761 -48.410 22.772 1.00 0.01 C
ATOM 12 O2' A A1388 -3.714 -47.677 23.974 1.00 0.01 O
ATOM 13 C1' A A1388 -3.838 -49.892 23.120 1.00 0.01 C
ATOM 14 N9 A A1388 -2.660 -50.659 22.695 1.00 0.10 N
ATOM 15 C8 A A1388 -1.816 -50.660 21.627 1.00 0.10 C
ATOM 16 N7 A A1388 -0.870 -51.560 21.748 1.00 0.10 N
ATOM 17 C5 A A1388 -1.108 -52.157 22.967 1.00 0.10 C
ATOM 18 C6 A A1388 -0.482 -53.185 23.704 1.00 0.10 C
ATOM 19 N6 A A1388 0.599 -53.890 23.325 1.00 0.10 N
ATOM 20 N1 A A1388 -1.024 -53.512 24.899 1.00 0.10 N
ATOM 21 C2 A A1388 -2.102 -52.823 25.303 1.00 0.10 C
ATOM 22 N3 A A1388 -2.767 -51.845 24.706 1.00 0.10 N
ATOM 23 C4 A A1388 -2.202 -51.588 23.539 1.00 0.10 C
ATOM 24 P U A1389 -6.266 -45.943 21.287 1.00 12.13 P
ATOM 25 OP1 U A1389 -7.639 -45.605 21.697 1.00 12.13 O
ATOM 26 OP2 U A1389 -6.045 -46.582 19.965 1.00 12.13 O
ATOM 27 O5' U A1389 -5.350 -44.667 21.433 1.00 12.13 O
TER
ATOM 1 O3' A B1386 -8.185 -57.422 19.012 1.00 0.01 O
ATOM 2 P U B1387 -7.505 -55.997 19.196 1.00 0.01 P
ATOM 3 OP1 U B1387 -8.539 -54.991 18.933 1.00 0.01 O
ATOM 4 OP2 U B1387 -6.272 -55.994 18.370 1.00 0.01 O
ATOM 5 O5' U B1387 -7.144 -55.985 20.733 1.00 0.01 O
ATOM 6 C5' U B1387 -8.176 -56.059 21.703 1.00 0.01 C
ATOM 7 C4' U B1387 -8.018 -55.006 22.763 1.00 0.01 C
ATOM 8 O4' U B1387 -6.886 -55.342 23.583 1.00 0.01 O
ATOM 9 C3' U B1387 -7.750 -53.593 22.262 1.00 0.01 C
ATOM 10 O3' U B1387 -8.956 -52.876 22.009 1.00 0.01 O
ATOM 11 C2' U B1387 -6.913 -52.999 23.374 1.00 0.01 C
ATOM 12 O2' U B1387 -7.742 -52.585 24.456 1.00 0.01 O
ATOM 13 C1' U B1387 -6.106 -54.212 23.828 1.00 0.01 C
ATOM 14 N1 U B1387 -4.797 -54.388 23.105 1.00 0.01 N
ATOM 15 C2 U B1387 -3.999 -55.308 23.713 1.00 0.01 C
ATOM 16 O2 U B1387 -4.335 -55.854 24.716 1.00 0.01 O
ATOM 17 N3 U B1387 -2.797 -55.584 23.192 1.00 0.01 N
ATOM 18 C4 U B1387 -2.280 -55.056 22.054 1.00 0.01 C
ATOM 19 O4 U B1387 -1.148 -55.451 21.692 1.00 0.01 O
ATOM 20 C5 U B1387 -3.150 -54.095 21.429 1.00 0.01 C
ATOM 21 C6 U B1387 -4.344 -53.798 21.965 1.00 0.01 C
ATOM 22 P A B1388 -8.961 -51.467 21.221 1.00 0.01 P
ATOM 23 OP1 A B1388 -10.316 -50.908 21.353 1.00 0.01 O
ATOM 24 OP2 A B1388 -8.422 -51.707 19.870 1.00 0.01 O
ATOM 25 O5' A B1388 -7.937 -50.605 22.071 1.00 0.01 O
TER
Atoms:
OP1: (-10.316,-50.908,21.353)
OP2: (-8.422,-51.707,19.870)
C3': (-5.078,-48.156,22.033)
C1': (-3.838,-49.892,23.120)
C5': (-7.007,-49.740,21.448)
O4': (-4.995,-50.414,22.539)
C8: (-1.816,-50.660,21.627)
O2': (-3.714,-47.677,23.974)
C6: (-0.482,-53.185,23.704)
C5: (-1.108,-52.157,22.967)
C4: (-2.202,-51.588,23.539)
P: (-8.961,-51.467,21.221)
C4': (-5.933,-49.350,22.410)
C2': (-3.761,-48.410,22.772)
C2: (-2.102,-52.823,25.303)
N1: (-1.024,-53.512,24.899)
N3: (-2.767,-51.845,24.706)
N6: (0.599,-53.890,23.325)
N7: (-0.870,-51.560,21.748)
N9: (-2.660,-50.659,22.695)
O5': (-7.937,-50.605,22.071)
O3': (-5.679,-46.931,22.403)
OP2: (-8.422,-51.707,19.870)
C3': (-5.078,-48.156,22.033)
C1': (-3.838,-49.892,23.120)
C5': (-7.007,-49.740,21.448)
O4': (-4.995,-50.414,22.539)
C8: (-1.816,-50.660,21.627)
O2': (-3.714,-47.677,23.974)
C6: (-0.482,-53.185,23.704)
C5: (-1.108,-52.157,22.967)
C4: (-2.202,-51.588,23.539)
P: (-8.961,-51.467,21.221)
C4': (-5.933,-49.350,22.410)
C2': (-3.761,-48.410,22.772)
C2: (-2.102,-52.823,25.303)
N1: (-1.024,-53.512,24.899)
N3: (-2.767,-51.845,24.706)
N6: (0.599,-53.890,23.325)
N7: (-0.870,-51.560,21.748)
N9: (-2.660,-50.659,22.695)
O5': (-7.937,-50.605,22.071)
O3': (-5.679,-46.931,22.403)
C4: (-2.280,-55.056,22.054)
N3: (-2.797,-55.584,23.192)
OP1: (-8.539,-54.991,18.933)
OP2: (-6.272,-55.994,18.370)
C2: (-3.999,-55.308,23.713)
C1': (-6.106,-54.212,23.828)
C3': (-7.750,-53.593,22.262)
O5': (-7.144,-55.985,20.733)
O4': (-6.886,-55.342,23.583)
C5': (-8.176,-56.059,21.703)
P: (-7.505,-55.997,19.196)
C4': (-8.018,-55.006,22.763)
C2': (-6.913,-52.999,23.374)
O2': (-7.742,-52.585,24.456)
N1: (-4.797,-54.388,23.105)
O4: (-1.148,-55.451,21.692)
O2: (-4.335,-55.854,24.716)
C6: (-4.344,-53.798,21.965)
C5: (-3.150,-54.095,21.429)
O3': (-8.956,-52.876,22.009)
N3: (-2.797,-55.584,23.192)
OP1: (-8.539,-54.991,18.933)
OP2: (-6.272,-55.994,18.370)
C2: (-3.999,-55.308,23.713)
C1': (-6.106,-54.212,23.828)
C3': (-7.750,-53.593,22.262)
O5': (-7.144,-55.985,20.733)
O4': (-6.886,-55.342,23.583)
C5': (-8.176,-56.059,21.703)
P: (-7.505,-55.997,19.196)
C4': (-8.018,-55.006,22.763)
C2': (-6.913,-52.999,23.374)
O2': (-7.742,-52.585,24.456)
N1: (-4.797,-54.388,23.105)
O4: (-1.148,-55.451,21.692)
O2: (-4.335,-55.854,24.716)
C6: (-4.344,-53.798,21.965)
C5: (-3.150,-54.095,21.429)
O3': (-8.956,-52.876,22.009)
Image (generated by PyMOL):