ClaRNA

Doublet info:

Details

Nucleotide types: AU
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 2GDI:X34:X10

Extra

PDB:
ATOM 1 O3' A A 33 -8.204 -5.635 3.171 1.00 39.46 O
ATOM 2 P A A 34 -6.937 -4.682 3.380 1.00 41.67 P
ATOM 3 OP1 A A 34 -5.715 -5.408 2.973 1.00 41.31 O
ATOM 4 OP2 A A 34 -7.046 -4.119 4.745 1.00 40.76 O
ATOM 5 O5' A A 34 -7.250 -3.529 2.323 1.00 42.65 O
ATOM 6 C5' A A 34 -6.462 -3.356 1.157 1.00 42.82 C
ATOM 7 C4' A A 34 -6.623 -1.921 0.701 1.00 43.33 C
ATOM 8 O4' A A 34 -8.042 -1.632 0.643 1.00 42.83 O
ATOM 9 C3' A A 34 -6.014 -0.895 1.657 1.00 43.37 C
ATOM 10 O3' A A 34 -5.357 0.147 0.942 1.00 43.89 O
ATOM 11 C2' A A 34 -7.227 -0.373 2.417 1.00 43.53 C
ATOM 12 O2' A A 34 -7.064 0.952 2.884 1.00 44.06 O
ATOM 13 C1' A A 34 -8.287 -0.422 1.325 1.00 43.18 C
ATOM 14 N9 A A 34 -9.645 -0.395 1.861 1.00 42.34 N
ATOM 15 C8 A A 34 -10.230 -1.290 2.713 1.00 42.41 C
ATOM 16 N7 A A 34 -11.463 -0.979 3.043 1.00 42.09 N
ATOM 17 C5 A A 34 -11.698 0.209 2.367 1.00 42.46 C
ATOM 18 C6 A A 34 -12.815 1.064 2.294 1.00 42.25 C
ATOM 19 N6 A A 34 -13.966 0.841 2.936 1.00 42.66 N
ATOM 20 N1 A A 34 -12.707 2.168 1.527 1.00 42.82 N
ATOM 21 C2 A A 34 -11.560 2.403 0.880 1.00 42.73 C
ATOM 22 N3 A A 34 -10.445 1.677 0.871 1.00 42.76 N
ATOM 23 C4 A A 34 -10.583 0.585 1.640 1.00 42.70 C
ATOM 24 P A A 35 -3.795 0.032 0.593 1.00 43.63 P
ATOM 25 OP1 A A 35 -3.196 -0.989 1.482 1.00 44.02 O
ATOM 26 OP2 A A 35 -3.235 1.402 0.565 1.00 43.79 O
ATOM 27 O5' A A 35 -3.814 -0.520 -0.910 1.00 41.90 O
TER

ATOM 1 O3' G B 9 -18.409 -5.648 2.944 1.00 31.78 O
ATOM 2 P U B 10 -18.045 -4.834 4.275 1.00 32.61 P
ATOM 3 OP1 U B 10 -18.561 -5.613 5.423 1.00 31.72 O
ATOM 4 OP2 U B 10 -18.420 -3.414 4.101 1.00 32.52 O
ATOM 5 O5' U B 10 -16.454 -4.897 4.286 1.00 32.18 O
ATOM 6 C5' U B 10 -15.788 -6.124 4.534 1.00 33.17 C
ATOM 7 C4' U B 10 -14.323 -5.938 4.207 1.00 32.98 C
ATOM 8 O4' U B 10 -14.208 -5.659 2.792 1.00 33.09 O
ATOM 9 C3' U B 10 -13.684 -4.720 4.854 1.00 33.97 C
ATOM 10 O3' U B 10 -13.291 -5.004 6.185 1.00 35.47 O
ATOM 11 C2' U B 10 -12.478 -4.507 3.944 1.00 33.10 C
ATOM 12 O2' U B 10 -11.386 -5.341 4.281 1.00 33.06 O
ATOM 13 C1' U B 10 -13.039 -4.893 2.575 1.00 32.97 C
ATOM 14 N1 U B 10 -13.339 -3.694 1.744 1.00 32.78 N
ATOM 15 C2 U B 10 -12.440 -3.360 0.754 1.00 32.64 C
ATOM 16 O2 U B 10 -11.452 -4.030 0.512 1.00 32.10 O
ATOM 17 N3 U B 10 -12.752 -2.228 0.046 1.00 31.47 N
ATOM 18 C4 U B 10 -13.848 -1.406 0.237 1.00 32.73 C
ATOM 19 O4 U B 10 -13.997 -0.421 -0.478 1.00 31.63 O
ATOM 20 C5 U B 10 -14.735 -1.812 1.300 1.00 32.62 C
ATOM 21 C6 U B 10 -14.451 -2.916 2.004 1.00 32.70 C
ATOM 22 P G B 11 -14.012 -4.286 7.420 1.00 38.23 P
ATOM 23 OP1 G B 11 -15.038 -3.347 6.910 1.00 37.68 O
ATOM 24 OP2 G B 11 -12.942 -3.799 8.316 1.00 38.02 O
ATOM 25 O5' G B 11 -14.758 -5.514 8.131 1.00 36.73 O
TER

Atoms:
OP1: (-5.715,-5.408,2.973)
OP2: (-7.046,-4.119,4.745)
C3': (-6.014,-0.895,1.657)
C1': (-8.287,-0.422,1.325)
C5': (-6.462,-3.356,1.157)
O4': (-8.042,-1.632,0.643)
C8: (-10.230,-1.290,2.713)
O2': (-7.064,0.952,2.884)
C6: (-12.815,1.064,2.294)
C5: (-11.698,0.209,2.367)
C4: (-10.583,0.585,1.640)
P: (-6.937,-4.682,3.380)
C4': (-6.623,-1.921,0.701)
C2': (-7.227,-0.373,2.417)
C2: (-11.560,2.403,0.880)
N1: (-12.707,2.168,1.527)
N3: (-10.445,1.677,0.871)
N6: (-13.966,0.841,2.936)
N7: (-11.463,-0.979,3.043)
N9: (-9.645,-0.395,1.861)
O5': (-7.250,-3.529,2.323)
O3': (-5.357,0.147,0.942)
C4: (-13.848,-1.406,0.237)
N3: (-12.752,-2.228,0.046)
OP1: (-18.561,-5.613,5.423)
OP2: (-18.420,-3.414,4.101)
C2: (-12.440,-3.360,0.754)
C1': (-13.039,-4.893,2.575)
C3': (-13.684,-4.720,4.854)
O5': (-16.454,-4.897,4.286)
O4': (-14.208,-5.659,2.792)
C5': (-15.788,-6.124,4.534)
P: (-18.045,-4.834,4.275)
C4': (-14.323,-5.938,4.207)
C2': (-12.478,-4.507,3.944)
O2': (-11.386,-5.341,4.281)
N1: (-13.339,-3.694,1.744)
O4: (-13.997,-0.421,-0.478)
O2: (-11.452,-4.030,0.512)
C6: (-14.451,-2.916,2.004)
C5: (-14.735,-1.812,1.300)
O3': (-13.291,-5.004,6.185)
Image (generated by PyMOL):
PyMOL image
show in jmol