Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3OH5:A1235:A1278
Extra
PDB:
ATOM 1 O3' G A1234 29.672 -88.954 0.032 1.00 45.01 O
ATOM 2 P A A1235 29.028 -88.172 1.279 1.00 49.51 P
ATOM 3 OP1 A A1235 29.980 -88.321 2.423 1.00 51.11 O
ATOM 4 OP2 A A1235 27.643 -88.647 1.451 1.00 49.87 O
ATOM 5 O5' A A1235 29.030 -86.680 0.778 1.00 55.91 O
ATOM 6 C5' A A1235 30.253 -86.038 0.493 1.00 58.85 C
ATOM 7 C4' A A1235 30.146 -84.548 0.608 1.00 50.69 C
ATOM 8 O4' A A1235 29.261 -84.059 -0.423 1.00 44.78 O
ATOM 9 C3' A A1235 29.609 -84.016 1.943 1.00 39.92 C
ATOM 10 O3' A A1235 30.428 -82.948 2.404 1.00 49.97 O
ATOM 11 C2' A A1235 28.248 -83.449 1.576 1.00 44.31 C
ATOM 12 O2' A A1235 27.883 -82.336 2.347 1.00 51.30 O
ATOM 13 C1' A A1235 28.454 -83.063 0.120 1.00 45.84 C
ATOM 14 N9 A A1235 27.233 -82.982 -0.664 1.00 32.82 N
ATOM 15 C8 A A1235 26.021 -83.521 -0.443 1.00 43.31 C
ATOM 16 N7 A A1235 25.139 -83.184 -1.345 1.00 46.32 N
ATOM 17 C5 A A1235 25.818 -82.360 -2.210 1.00 38.77 C
ATOM 18 C6 A A1235 25.450 -81.675 -3.380 1.00 35.38 C
ATOM 19 N6 A A1235 24.257 -81.681 -3.953 1.00 38.55 N
ATOM 20 N1 A A1235 26.379 -80.950 -3.988 1.00 38.62 N
ATOM 21 C2 A A1235 27.591 -80.904 -3.438 1.00 38.61 C
ATOM 22 N3 A A1235 28.057 -81.495 -2.347 1.00 40.42 N
ATOM 23 C4 A A1235 27.107 -82.231 -1.782 1.00 37.12 C
ATOM 24 P A A1236 31.726 -83.236 3.310 1.00 52.17 P
ATOM 25 OP1 A A1236 32.910 -83.297 2.382 1.00 32.02 O
ATOM 26 OP2 A A1236 31.414 -84.411 4.159 1.00 61.60 O
ATOM 27 O5' A A1236 31.805 -81.936 4.213 1.00 33.69 O
TER
ATOM 1 O3' G B1277 29.886 -82.852 -7.910 1.00 33.28 O
ATOM 2 P U B1278 29.576 -83.203 -9.434 1.00 33.85 P
ATOM 3 OP1 U B1278 30.208 -84.498 -9.732 1.00 35.50 O
ATOM 4 OP2 U B1278 29.948 -82.021 -10.242 1.00 30.58 O
ATOM 5 O5' U B1278 28.012 -83.384 -9.416 1.00 39.86 O
ATOM 6 C5' U B1278 27.165 -82.464 -10.086 1.00 35.42 C
ATOM 7 C4' U B1278 25.795 -82.416 -9.465 1.00 28.27 C
ATOM 8 O4' U B1278 25.714 -83.410 -8.412 1.00 32.65 O
ATOM 9 C3' U B1278 25.430 -81.095 -8.824 1.00 30.60 C
ATOM 10 O3' U B1278 24.044 -80.836 -9.032 1.00 31.36 O
ATOM 11 C2' U B1278 25.718 -81.341 -7.339 1.00 29.17 C
ATOM 12 O2' U B1278 24.975 -80.548 -6.458 1.00 46.41 O
ATOM 13 C1' U B1278 25.356 -82.795 -7.189 1.00 29.12 C
ATOM 14 N1 U B1278 26.074 -83.478 -6.106 1.00 35.72 N
ATOM 15 C2 U B1278 25.381 -84.285 -5.217 1.00 41.42 C
ATOM 16 O2 U B1278 24.176 -84.432 -5.234 1.00 49.38 O
ATOM 17 N3 U B1278 26.135 -84.927 -4.274 1.00 44.00 N
ATOM 18 C4 U B1278 27.494 -84.852 -4.145 1.00 43.32 C
ATOM 19 O4 U B1278 28.032 -85.475 -3.239 1.00 49.10 O
ATOM 20 C5 U B1278 28.144 -84.023 -5.116 1.00 42.77 C
ATOM 21 C6 U B1278 27.435 -83.385 -6.048 1.00 41.90 C
ATOM 22 P C B1279 23.598 -79.753 -10.124 1.00 38.00 P
ATOM 23 OP1 C B1279 22.162 -79.485 -9.914 1.00 47.38 O
ATOM 24 OP2 C B1279 24.053 -80.244 -11.467 1.00 33.44 O
ATOM 25 O5' C B1279 24.448 -78.481 -9.701 1.00 39.64 O
TER
ATOM 2 P A A1235 29.028 -88.172 1.279 1.00 49.51 P
ATOM 3 OP1 A A1235 29.980 -88.321 2.423 1.00 51.11 O
ATOM 4 OP2 A A1235 27.643 -88.647 1.451 1.00 49.87 O
ATOM 5 O5' A A1235 29.030 -86.680 0.778 1.00 55.91 O
ATOM 6 C5' A A1235 30.253 -86.038 0.493 1.00 58.85 C
ATOM 7 C4' A A1235 30.146 -84.548 0.608 1.00 50.69 C
ATOM 8 O4' A A1235 29.261 -84.059 -0.423 1.00 44.78 O
ATOM 9 C3' A A1235 29.609 -84.016 1.943 1.00 39.92 C
ATOM 10 O3' A A1235 30.428 -82.948 2.404 1.00 49.97 O
ATOM 11 C2' A A1235 28.248 -83.449 1.576 1.00 44.31 C
ATOM 12 O2' A A1235 27.883 -82.336 2.347 1.00 51.30 O
ATOM 13 C1' A A1235 28.454 -83.063 0.120 1.00 45.84 C
ATOM 14 N9 A A1235 27.233 -82.982 -0.664 1.00 32.82 N
ATOM 15 C8 A A1235 26.021 -83.521 -0.443 1.00 43.31 C
ATOM 16 N7 A A1235 25.139 -83.184 -1.345 1.00 46.32 N
ATOM 17 C5 A A1235 25.818 -82.360 -2.210 1.00 38.77 C
ATOM 18 C6 A A1235 25.450 -81.675 -3.380 1.00 35.38 C
ATOM 19 N6 A A1235 24.257 -81.681 -3.953 1.00 38.55 N
ATOM 20 N1 A A1235 26.379 -80.950 -3.988 1.00 38.62 N
ATOM 21 C2 A A1235 27.591 -80.904 -3.438 1.00 38.61 C
ATOM 22 N3 A A1235 28.057 -81.495 -2.347 1.00 40.42 N
ATOM 23 C4 A A1235 27.107 -82.231 -1.782 1.00 37.12 C
ATOM 24 P A A1236 31.726 -83.236 3.310 1.00 52.17 P
ATOM 25 OP1 A A1236 32.910 -83.297 2.382 1.00 32.02 O
ATOM 26 OP2 A A1236 31.414 -84.411 4.159 1.00 61.60 O
ATOM 27 O5' A A1236 31.805 -81.936 4.213 1.00 33.69 O
TER
ATOM 1 O3' G B1277 29.886 -82.852 -7.910 1.00 33.28 O
ATOM 2 P U B1278 29.576 -83.203 -9.434 1.00 33.85 P
ATOM 3 OP1 U B1278 30.208 -84.498 -9.732 1.00 35.50 O
ATOM 4 OP2 U B1278 29.948 -82.021 -10.242 1.00 30.58 O
ATOM 5 O5' U B1278 28.012 -83.384 -9.416 1.00 39.86 O
ATOM 6 C5' U B1278 27.165 -82.464 -10.086 1.00 35.42 C
ATOM 7 C4' U B1278 25.795 -82.416 -9.465 1.00 28.27 C
ATOM 8 O4' U B1278 25.714 -83.410 -8.412 1.00 32.65 O
ATOM 9 C3' U B1278 25.430 -81.095 -8.824 1.00 30.60 C
ATOM 10 O3' U B1278 24.044 -80.836 -9.032 1.00 31.36 O
ATOM 11 C2' U B1278 25.718 -81.341 -7.339 1.00 29.17 C
ATOM 12 O2' U B1278 24.975 -80.548 -6.458 1.00 46.41 O
ATOM 13 C1' U B1278 25.356 -82.795 -7.189 1.00 29.12 C
ATOM 14 N1 U B1278 26.074 -83.478 -6.106 1.00 35.72 N
ATOM 15 C2 U B1278 25.381 -84.285 -5.217 1.00 41.42 C
ATOM 16 O2 U B1278 24.176 -84.432 -5.234 1.00 49.38 O
ATOM 17 N3 U B1278 26.135 -84.927 -4.274 1.00 44.00 N
ATOM 18 C4 U B1278 27.494 -84.852 -4.145 1.00 43.32 C
ATOM 19 O4 U B1278 28.032 -85.475 -3.239 1.00 49.10 O
ATOM 20 C5 U B1278 28.144 -84.023 -5.116 1.00 42.77 C
ATOM 21 C6 U B1278 27.435 -83.385 -6.048 1.00 41.90 C
ATOM 22 P C B1279 23.598 -79.753 -10.124 1.00 38.00 P
ATOM 23 OP1 C B1279 22.162 -79.485 -9.914 1.00 47.38 O
ATOM 24 OP2 C B1279 24.053 -80.244 -11.467 1.00 33.44 O
ATOM 25 O5' C B1279 24.448 -78.481 -9.701 1.00 39.64 O
TER
Atoms:
OP1: (29.980,-88.321,2.423)
OP2: (27.643,-88.647,1.451)
C3': (29.609,-84.016,1.943)
C1': (28.454,-83.063,0.120)
C5': (30.253,-86.038,0.493)
O4': (29.261,-84.059,-0.423)
C8: (26.021,-83.521,-0.443)
O2': (27.883,-82.336,2.347)
C6: (25.450,-81.675,-3.380)
C5: (25.818,-82.360,-2.210)
C4: (27.107,-82.231,-1.782)
P: (29.028,-88.172,1.279)
C4': (30.146,-84.548,0.608)
C2': (28.248,-83.449,1.576)
C2: (27.591,-80.904,-3.438)
N1: (26.379,-80.950,-3.988)
N3: (28.057,-81.495,-2.347)
N6: (24.257,-81.681,-3.953)
N7: (25.139,-83.184,-1.345)
N9: (27.233,-82.982,-0.664)
O5': (29.030,-86.680,0.778)
O3': (30.428,-82.948,2.404)
OP2: (27.643,-88.647,1.451)
C3': (29.609,-84.016,1.943)
C1': (28.454,-83.063,0.120)
C5': (30.253,-86.038,0.493)
O4': (29.261,-84.059,-0.423)
C8: (26.021,-83.521,-0.443)
O2': (27.883,-82.336,2.347)
C6: (25.450,-81.675,-3.380)
C5: (25.818,-82.360,-2.210)
C4: (27.107,-82.231,-1.782)
P: (29.028,-88.172,1.279)
C4': (30.146,-84.548,0.608)
C2': (28.248,-83.449,1.576)
C2: (27.591,-80.904,-3.438)
N1: (26.379,-80.950,-3.988)
N3: (28.057,-81.495,-2.347)
N6: (24.257,-81.681,-3.953)
N7: (25.139,-83.184,-1.345)
N9: (27.233,-82.982,-0.664)
O5': (29.030,-86.680,0.778)
O3': (30.428,-82.948,2.404)
C4: (27.494,-84.852,-4.145)
N3: (26.135,-84.927,-4.274)
OP1: (30.208,-84.498,-9.732)
OP2: (29.948,-82.021,-10.242)
C2: (25.381,-84.285,-5.217)
C1': (25.356,-82.795,-7.189)
C3': (25.430,-81.095,-8.824)
O5': (28.012,-83.384,-9.416)
O4': (25.714,-83.410,-8.412)
C5': (27.165,-82.464,-10.086)
P: (29.576,-83.203,-9.434)
C4': (25.795,-82.416,-9.465)
C2': (25.718,-81.341,-7.339)
O2': (24.975,-80.548,-6.458)
N1: (26.074,-83.478,-6.106)
O4: (28.032,-85.475,-3.239)
O2: (24.176,-84.432,-5.234)
C6: (27.435,-83.385,-6.048)
C5: (28.144,-84.023,-5.116)
O3': (24.044,-80.836,-9.032)
N3: (26.135,-84.927,-4.274)
OP1: (30.208,-84.498,-9.732)
OP2: (29.948,-82.021,-10.242)
C2: (25.381,-84.285,-5.217)
C1': (25.356,-82.795,-7.189)
C3': (25.430,-81.095,-8.824)
O5': (28.012,-83.384,-9.416)
O4': (25.714,-83.410,-8.412)
C5': (27.165,-82.464,-10.086)
P: (29.576,-83.203,-9.434)
C4': (25.795,-82.416,-9.465)
C2': (25.718,-81.341,-7.339)
O2': (24.975,-80.548,-6.458)
N1: (26.074,-83.478,-6.106)
O4: (28.032,-85.475,-3.239)
O2: (24.176,-84.432,-5.234)
C6: (27.435,-83.385,-6.048)
C5: (28.144,-84.023,-5.116)
O3': (24.044,-80.836,-9.032)
Image (generated by PyMOL):