Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0222:0221
Extra
PDB:
ATOM 1 O3' U A 221 49.868 107.783 20.865 1.00 39.32 O
ATOM 2 P A A 222 49.692 107.929 19.273 1.00 41.26 P
ATOM 3 OP1 A A 222 48.733 109.051 19.088 1.00 38.33 O
ATOM 4 OP2 A A 222 49.403 106.603 18.666 1.00 38.32 O
ATOM 5 O5' A A 222 51.132 108.400 18.779 1.00 40.92 O
ATOM 6 C5' A A 222 51.679 109.656 19.235 1.00 40.70 C
ATOM 7 C4' A A 222 53.165 109.684 19.025 1.00 39.68 C
ATOM 8 O4' A A 222 53.784 108.633 19.808 1.00 40.20 O
ATOM 9 C3' A A 222 53.606 109.382 17.608 1.00 41.42 C
ATOM 10 O3' A A 222 53.480 110.521 16.771 1.00 45.07 O
ATOM 11 C2' A A 222 55.041 108.911 17.808 1.00 39.56 C
ATOM 12 O2' A A 222 55.974 109.956 18.000 1.00 39.89 O
ATOM 13 C1' A A 222 54.904 108.113 19.106 1.00 39.42 C
ATOM 14 N9 A A 222 54.670 106.698 18.839 1.00 36.31 N
ATOM 15 C8 A A 222 53.471 106.047 18.684 1.00 35.70 C
ATOM 16 N7 A A 222 53.599 104.768 18.426 1.00 36.09 N
ATOM 17 C5 A A 222 54.972 104.565 18.418 1.00 33.14 C
ATOM 18 C6 A A 222 55.750 103.425 18.210 1.00 33.78 C
ATOM 19 N6 A A 222 55.234 102.223 17.949 1.00 36.36 N
ATOM 20 N1 A A 222 57.095 103.557 18.278 1.00 34.38 N
ATOM 21 C2 A A 222 57.605 104.766 18.529 1.00 32.61 C
ATOM 22 N3 A A 222 56.974 105.914 18.738 1.00 33.70 N
ATOM 23 C4 A A 222 55.643 105.742 18.672 1.00 34.10 C
ATOM 24 P C A 223 53.696 110.367 15.188 1.00 47.54 P
ATOM 25 OP1 C A 223 53.668 111.744 14.627 1.00 47.81 O
ATOM 26 OP2 C A 223 52.760 109.337 14.662 1.00 45.60 O
ATOM 27 O5' C A 223 55.185 109.808 15.111 1.00 45.81 O
TER
ATOM 1 O3' A B 220 48.513 102.020 21.989 1.00 40.98 O
ATOM 2 P U B 221 48.808 102.826 20.632 1.00 38.81 P
ATOM 3 OP1 U B 221 47.490 103.266 20.123 1.00 39.36 O
ATOM 4 OP2 U B 221 49.719 102.048 19.761 1.00 36.20 O
ATOM 5 O5' U B 221 49.586 104.114 21.141 1.00 41.05 O
ATOM 6 C5' U B 221 48.958 105.020 22.064 1.00 39.36 C
ATOM 7 C4' U B 221 49.945 106.051 22.514 1.00 39.18 C
ATOM 8 O4' U B 221 50.999 105.419 23.281 1.00 41.07 O
ATOM 9 C3' U B 221 50.684 106.749 21.394 1.00 38.33 C
ATOM 10 O3' U B 221 49.868 107.783 20.865 1.00 39.32 O
ATOM 11 C2' U B 221 51.919 107.270 22.115 1.00 38.99 C
ATOM 12 O2' U B 221 51.627 108.408 22.900 1.00 40.93 O
ATOM 13 C1' U B 221 52.213 106.117 23.075 1.00 38.95 C
ATOM 14 N1 U B 221 53.218 105.162 22.594 1.00 38.22 N
ATOM 15 C2 U B 221 54.539 105.411 22.903 1.00 40.43 C
ATOM 16 O2 U B 221 54.901 106.393 23.538 1.00 42.82 O
ATOM 17 N3 U B 221 55.426 104.469 22.443 1.00 38.89 N
ATOM 18 C4 U B 221 55.129 103.334 21.723 1.00 38.40 C
ATOM 19 O4 U B 221 56.037 102.576 21.385 1.00 39.46 O
ATOM 20 C5 U B 221 53.747 103.156 21.440 1.00 37.84 C
ATOM 21 C6 U B 221 52.861 104.053 21.872 1.00 38.28 C
ATOM 22 P A B 222 49.692 107.929 19.273 1.00 41.26 P
ATOM 23 OP1 A B 222 48.733 109.051 19.088 1.00 38.33 O
ATOM 24 OP2 A B 222 49.403 106.603 18.666 1.00 38.32 O
ATOM 25 O5' A B 222 51.132 108.400 18.779 1.00 40.92 O
TER
ATOM 2 P A A 222 49.692 107.929 19.273 1.00 41.26 P
ATOM 3 OP1 A A 222 48.733 109.051 19.088 1.00 38.33 O
ATOM 4 OP2 A A 222 49.403 106.603 18.666 1.00 38.32 O
ATOM 5 O5' A A 222 51.132 108.400 18.779 1.00 40.92 O
ATOM 6 C5' A A 222 51.679 109.656 19.235 1.00 40.70 C
ATOM 7 C4' A A 222 53.165 109.684 19.025 1.00 39.68 C
ATOM 8 O4' A A 222 53.784 108.633 19.808 1.00 40.20 O
ATOM 9 C3' A A 222 53.606 109.382 17.608 1.00 41.42 C
ATOM 10 O3' A A 222 53.480 110.521 16.771 1.00 45.07 O
ATOM 11 C2' A A 222 55.041 108.911 17.808 1.00 39.56 C
ATOM 12 O2' A A 222 55.974 109.956 18.000 1.00 39.89 O
ATOM 13 C1' A A 222 54.904 108.113 19.106 1.00 39.42 C
ATOM 14 N9 A A 222 54.670 106.698 18.839 1.00 36.31 N
ATOM 15 C8 A A 222 53.471 106.047 18.684 1.00 35.70 C
ATOM 16 N7 A A 222 53.599 104.768 18.426 1.00 36.09 N
ATOM 17 C5 A A 222 54.972 104.565 18.418 1.00 33.14 C
ATOM 18 C6 A A 222 55.750 103.425 18.210 1.00 33.78 C
ATOM 19 N6 A A 222 55.234 102.223 17.949 1.00 36.36 N
ATOM 20 N1 A A 222 57.095 103.557 18.278 1.00 34.38 N
ATOM 21 C2 A A 222 57.605 104.766 18.529 1.00 32.61 C
ATOM 22 N3 A A 222 56.974 105.914 18.738 1.00 33.70 N
ATOM 23 C4 A A 222 55.643 105.742 18.672 1.00 34.10 C
ATOM 24 P C A 223 53.696 110.367 15.188 1.00 47.54 P
ATOM 25 OP1 C A 223 53.668 111.744 14.627 1.00 47.81 O
ATOM 26 OP2 C A 223 52.760 109.337 14.662 1.00 45.60 O
ATOM 27 O5' C A 223 55.185 109.808 15.111 1.00 45.81 O
TER
ATOM 1 O3' A B 220 48.513 102.020 21.989 1.00 40.98 O
ATOM 2 P U B 221 48.808 102.826 20.632 1.00 38.81 P
ATOM 3 OP1 U B 221 47.490 103.266 20.123 1.00 39.36 O
ATOM 4 OP2 U B 221 49.719 102.048 19.761 1.00 36.20 O
ATOM 5 O5' U B 221 49.586 104.114 21.141 1.00 41.05 O
ATOM 6 C5' U B 221 48.958 105.020 22.064 1.00 39.36 C
ATOM 7 C4' U B 221 49.945 106.051 22.514 1.00 39.18 C
ATOM 8 O4' U B 221 50.999 105.419 23.281 1.00 41.07 O
ATOM 9 C3' U B 221 50.684 106.749 21.394 1.00 38.33 C
ATOM 10 O3' U B 221 49.868 107.783 20.865 1.00 39.32 O
ATOM 11 C2' U B 221 51.919 107.270 22.115 1.00 38.99 C
ATOM 12 O2' U B 221 51.627 108.408 22.900 1.00 40.93 O
ATOM 13 C1' U B 221 52.213 106.117 23.075 1.00 38.95 C
ATOM 14 N1 U B 221 53.218 105.162 22.594 1.00 38.22 N
ATOM 15 C2 U B 221 54.539 105.411 22.903 1.00 40.43 C
ATOM 16 O2 U B 221 54.901 106.393 23.538 1.00 42.82 O
ATOM 17 N3 U B 221 55.426 104.469 22.443 1.00 38.89 N
ATOM 18 C4 U B 221 55.129 103.334 21.723 1.00 38.40 C
ATOM 19 O4 U B 221 56.037 102.576 21.385 1.00 39.46 O
ATOM 20 C5 U B 221 53.747 103.156 21.440 1.00 37.84 C
ATOM 21 C6 U B 221 52.861 104.053 21.872 1.00 38.28 C
ATOM 22 P A B 222 49.692 107.929 19.273 1.00 41.26 P
ATOM 23 OP1 A B 222 48.733 109.051 19.088 1.00 38.33 O
ATOM 24 OP2 A B 222 49.403 106.603 18.666 1.00 38.32 O
ATOM 25 O5' A B 222 51.132 108.400 18.779 1.00 40.92 O
TER
Atoms:
OP1: (48.733,109.051,19.088)
OP2: (49.403,106.603,18.666)
C3': (53.606,109.382,17.608)
C1': (54.904,108.113,19.106)
C5': (51.679,109.656,19.235)
O4': (53.784,108.633,19.808)
C8: (53.471,106.047,18.684)
O2': (55.974,109.956,18.000)
C6: (55.750,103.425,18.210)
C5: (54.972,104.565,18.418)
C4: (55.643,105.742,18.672)
P: (49.692,107.929,19.273)
C4': (53.165,109.684,19.025)
C2': (55.041,108.911,17.808)
C2: (57.605,104.766,18.529)
N1: (57.095,103.557,18.278)
N3: (56.974,105.914,18.738)
N6: (55.234,102.223,17.949)
N7: (53.599,104.768,18.426)
N9: (54.670,106.698,18.839)
O5': (51.132,108.400,18.779)
O3': (53.480,110.521,16.771)
OP2: (49.403,106.603,18.666)
C3': (53.606,109.382,17.608)
C1': (54.904,108.113,19.106)
C5': (51.679,109.656,19.235)
O4': (53.784,108.633,19.808)
C8: (53.471,106.047,18.684)
O2': (55.974,109.956,18.000)
C6: (55.750,103.425,18.210)
C5: (54.972,104.565,18.418)
C4: (55.643,105.742,18.672)
P: (49.692,107.929,19.273)
C4': (53.165,109.684,19.025)
C2': (55.041,108.911,17.808)
C2: (57.605,104.766,18.529)
N1: (57.095,103.557,18.278)
N3: (56.974,105.914,18.738)
N6: (55.234,102.223,17.949)
N7: (53.599,104.768,18.426)
N9: (54.670,106.698,18.839)
O5': (51.132,108.400,18.779)
O3': (53.480,110.521,16.771)
C4: (55.129,103.334,21.723)
N3: (55.426,104.469,22.443)
OP1: (47.490,103.266,20.123)
OP2: (49.719,102.048,19.761)
C2: (54.539,105.411,22.903)
C1': (52.213,106.117,23.075)
C3': (50.684,106.749,21.394)
O5': (49.586,104.114,21.141)
O4': (50.999,105.419,23.281)
C5': (48.958,105.020,22.064)
P: (48.808,102.826,20.632)
C4': (49.945,106.051,22.514)
C2': (51.919,107.270,22.115)
O2': (51.627,108.408,22.900)
N1: (53.218,105.162,22.594)
O4: (56.037,102.576,21.385)
O2: (54.901,106.393,23.538)
C6: (52.861,104.053,21.872)
C5: (53.747,103.156,21.440)
O3': (49.868,107.783,20.865)
N3: (55.426,104.469,22.443)
OP1: (47.490,103.266,20.123)
OP2: (49.719,102.048,19.761)
C2: (54.539,105.411,22.903)
C1': (52.213,106.117,23.075)
C3': (50.684,106.749,21.394)
O5': (49.586,104.114,21.141)
O4': (50.999,105.419,23.281)
C5': (48.958,105.020,22.064)
P: (48.808,102.826,20.632)
C4': (49.945,106.051,22.514)
C2': (51.919,107.270,22.115)
O2': (51.627,108.408,22.900)
N1: (53.218,105.162,22.594)
O4: (56.037,102.576,21.385)
O2: (54.901,106.393,23.538)
C6: (52.861,104.053,21.872)
C5: (53.747,103.156,21.440)
O3': (49.868,107.783,20.865)
Image (generated by PyMOL):