Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:92:924
Extra
PDB:
ATOM 1 O3' U A 1 54.707 12.096 103.611 1.00123.42 O
ATOM 2 P A A 2 54.811 13.237 102.470 1.00116.97 P
ATOM 3 OP1 A A 2 53.461 13.763 102.211 1.00116.57 O
ATOM 4 OP2 A A 2 55.608 12.698 101.339 1.00117.66 O
ATOM 5 O5' A A 2 55.705 14.368 103.145 1.00109.87 O
ATOM 6 C5' A A 2 55.263 15.727 103.252 1.00 98.46 C
ATOM 7 C4' A A 2 56.417 16.596 103.684 1.00 90.75 C
ATOM 8 O4' A A 2 57.035 15.995 104.849 1.00 89.35 O
ATOM 9 C3' A A 2 57.550 16.739 102.678 1.00 86.16 C
ATOM 10 O3' A A 2 58.265 17.953 102.908 1.00 76.85 O
ATOM 11 C2' A A 2 58.407 15.509 102.968 1.00 86.95 C
ATOM 12 O2' A A 2 59.771 15.676 102.640 1.00 87.93 O
ATOM 13 C1' A A 2 58.226 15.325 104.476 1.00 88.34 C
ATOM 14 N9 A A 2 58.083 13.918 104.868 1.00 89.77 N
ATOM 15 C8 A A 2 57.772 12.836 104.073 1.00 89.62 C
ATOM 16 N7 A A 2 57.697 11.703 104.724 1.00 88.92 N
ATOM 17 C5 A A 2 57.985 12.053 106.034 1.00 90.09 C
ATOM 18 C6 A A 2 58.068 11.297 107.214 1.00 90.13 C
ATOM 19 N6 A A 2 57.862 9.980 107.264 1.00 90.17 N
ATOM 20 N1 A A 2 58.373 11.949 108.355 1.00 90.13 N
ATOM 21 C2 A A 2 58.581 13.272 108.303 1.00 90.29 C
ATOM 22 N3 A A 2 58.536 14.092 107.258 1.00 90.21 N
ATOM 23 C4 A A 2 58.228 13.413 106.139 1.00 90.38 C
ATOM 24 P G A 3 57.953 19.251 102.011 1.00 68.94 P
ATOM 25 OP1 G A 3 59.026 20.228 102.263 1.00 69.64 O
ATOM 26 OP2 G A 3 56.546 19.630 102.267 1.00 69.84 O
ATOM 27 O5' G A 3 58.051 18.756 100.500 1.00 64.94 O
TER
ATOM 1 O3' U B 23 61.835 2.202 100.553 1.00127.43 O
ATOM 2 P G B 24 61.627 3.489 99.614 1.00122.23 P
ATOM 3 OP1 G B 24 62.380 3.240 98.357 1.00122.61 O
ATOM 4 OP2 G B 24 61.918 4.704 100.420 1.00122.11 O
ATOM 5 O5' G B 24 60.068 3.471 99.288 1.00117.75 O
ATOM 6 C5' G B 24 59.584 3.423 97.931 1.00110.46 C
ATOM 7 C4' G B 24 58.652 4.584 97.675 1.00104.68 C
ATOM 8 O4' G B 24 57.605 4.568 98.684 1.00103.42 O
ATOM 9 C3' G B 24 59.284 5.961 97.820 1.00101.06 C
ATOM 10 O3' G B 24 59.961 6.371 96.637 1.00 95.80 O
ATOM 11 C2' G B 24 58.086 6.829 98.177 1.00100.57 C
ATOM 12 O2' G B 24 57.259 7.136 97.072 1.00 99.59 O
ATOM 13 C1' G B 24 57.332 5.891 99.118 1.00101.17 C
ATOM 14 N9 G B 24 57.779 6.021 100.504 1.00100.38 N
ATOM 15 C8 G B 24 58.476 5.102 101.257 1.00100.09 C
ATOM 16 N7 G B 24 58.730 5.517 102.468 1.00 99.71 N
ATOM 17 C5 G B 24 58.165 6.783 102.519 1.00 99.97 C
ATOM 18 C6 G B 24 58.111 7.726 103.577 1.00100.24 C
ATOM 19 O6 G B 24 58.552 7.623 104.725 1.00100.82 O
ATOM 20 N1 G B 24 57.452 8.887 103.192 1.00100.48 N
ATOM 21 C2 G B 24 56.908 9.112 101.952 1.00100.71 C
ATOM 22 N2 G B 24 56.318 10.294 101.771 1.00100.76 N
ATOM 23 N3 G B 24 56.942 8.241 100.963 1.00100.58 N
ATOM 24 C4 G B 24 57.580 7.108 101.313 1.00100.11 C
ATOM 25 P C B 25 61.278 7.285 96.751 1.00 91.15 P
ATOM 26 OP1 C B 25 61.816 7.441 95.379 1.00 91.91 O
ATOM 27 OP2 C B 25 62.156 6.755 97.823 1.00 91.79 O
ATOM 28 O5' C B 25 60.713 8.692 97.229 1.00 88.48 O
TER
ATOM 2 P A A 2 54.811 13.237 102.470 1.00116.97 P
ATOM 3 OP1 A A 2 53.461 13.763 102.211 1.00116.57 O
ATOM 4 OP2 A A 2 55.608 12.698 101.339 1.00117.66 O
ATOM 5 O5' A A 2 55.705 14.368 103.145 1.00109.87 O
ATOM 6 C5' A A 2 55.263 15.727 103.252 1.00 98.46 C
ATOM 7 C4' A A 2 56.417 16.596 103.684 1.00 90.75 C
ATOM 8 O4' A A 2 57.035 15.995 104.849 1.00 89.35 O
ATOM 9 C3' A A 2 57.550 16.739 102.678 1.00 86.16 C
ATOM 10 O3' A A 2 58.265 17.953 102.908 1.00 76.85 O
ATOM 11 C2' A A 2 58.407 15.509 102.968 1.00 86.95 C
ATOM 12 O2' A A 2 59.771 15.676 102.640 1.00 87.93 O
ATOM 13 C1' A A 2 58.226 15.325 104.476 1.00 88.34 C
ATOM 14 N9 A A 2 58.083 13.918 104.868 1.00 89.77 N
ATOM 15 C8 A A 2 57.772 12.836 104.073 1.00 89.62 C
ATOM 16 N7 A A 2 57.697 11.703 104.724 1.00 88.92 N
ATOM 17 C5 A A 2 57.985 12.053 106.034 1.00 90.09 C
ATOM 18 C6 A A 2 58.068 11.297 107.214 1.00 90.13 C
ATOM 19 N6 A A 2 57.862 9.980 107.264 1.00 90.17 N
ATOM 20 N1 A A 2 58.373 11.949 108.355 1.00 90.13 N
ATOM 21 C2 A A 2 58.581 13.272 108.303 1.00 90.29 C
ATOM 22 N3 A A 2 58.536 14.092 107.258 1.00 90.21 N
ATOM 23 C4 A A 2 58.228 13.413 106.139 1.00 90.38 C
ATOM 24 P G A 3 57.953 19.251 102.011 1.00 68.94 P
ATOM 25 OP1 G A 3 59.026 20.228 102.263 1.00 69.64 O
ATOM 26 OP2 G A 3 56.546 19.630 102.267 1.00 69.84 O
ATOM 27 O5' G A 3 58.051 18.756 100.500 1.00 64.94 O
TER
ATOM 1 O3' U B 23 61.835 2.202 100.553 1.00127.43 O
ATOM 2 P G B 24 61.627 3.489 99.614 1.00122.23 P
ATOM 3 OP1 G B 24 62.380 3.240 98.357 1.00122.61 O
ATOM 4 OP2 G B 24 61.918 4.704 100.420 1.00122.11 O
ATOM 5 O5' G B 24 60.068 3.471 99.288 1.00117.75 O
ATOM 6 C5' G B 24 59.584 3.423 97.931 1.00110.46 C
ATOM 7 C4' G B 24 58.652 4.584 97.675 1.00104.68 C
ATOM 8 O4' G B 24 57.605 4.568 98.684 1.00103.42 O
ATOM 9 C3' G B 24 59.284 5.961 97.820 1.00101.06 C
ATOM 10 O3' G B 24 59.961 6.371 96.637 1.00 95.80 O
ATOM 11 C2' G B 24 58.086 6.829 98.177 1.00100.57 C
ATOM 12 O2' G B 24 57.259 7.136 97.072 1.00 99.59 O
ATOM 13 C1' G B 24 57.332 5.891 99.118 1.00101.17 C
ATOM 14 N9 G B 24 57.779 6.021 100.504 1.00100.38 N
ATOM 15 C8 G B 24 58.476 5.102 101.257 1.00100.09 C
ATOM 16 N7 G B 24 58.730 5.517 102.468 1.00 99.71 N
ATOM 17 C5 G B 24 58.165 6.783 102.519 1.00 99.97 C
ATOM 18 C6 G B 24 58.111 7.726 103.577 1.00100.24 C
ATOM 19 O6 G B 24 58.552 7.623 104.725 1.00100.82 O
ATOM 20 N1 G B 24 57.452 8.887 103.192 1.00100.48 N
ATOM 21 C2 G B 24 56.908 9.112 101.952 1.00100.71 C
ATOM 22 N2 G B 24 56.318 10.294 101.771 1.00100.76 N
ATOM 23 N3 G B 24 56.942 8.241 100.963 1.00100.58 N
ATOM 24 C4 G B 24 57.580 7.108 101.313 1.00100.11 C
ATOM 25 P C B 25 61.278 7.285 96.751 1.00 91.15 P
ATOM 26 OP1 C B 25 61.816 7.441 95.379 1.00 91.91 O
ATOM 27 OP2 C B 25 62.156 6.755 97.823 1.00 91.79 O
ATOM 28 O5' C B 25 60.713 8.692 97.229 1.00 88.48 O
TER
Atoms:
OP1: (53.461,13.763,102.211)
OP2: (55.608,12.698,101.339)
C3': (57.550,16.739,102.678)
C1': (58.226,15.325,104.476)
C5': (55.263,15.727,103.252)
O4': (57.035,15.995,104.849)
C8: (57.772,12.836,104.073)
O2': (59.771,15.676,102.640)
C6: (58.068,11.297,107.214)
C5: (57.985,12.053,106.034)
C4: (58.228,13.413,106.139)
P: (54.811,13.237,102.470)
C4': (56.417,16.596,103.684)
C2': (58.407,15.509,102.968)
C2: (58.581,13.272,108.303)
N1: (58.373,11.949,108.355)
N3: (58.536,14.092,107.258)
N6: (57.862,9.980,107.264)
N7: (57.697,11.703,104.724)
N9: (58.083,13.918,104.868)
O5': (55.705,14.368,103.145)
O3': (58.265,17.953,102.908)
OP2: (55.608,12.698,101.339)
C3': (57.550,16.739,102.678)
C1': (58.226,15.325,104.476)
C5': (55.263,15.727,103.252)
O4': (57.035,15.995,104.849)
C8: (57.772,12.836,104.073)
O2': (59.771,15.676,102.640)
C6: (58.068,11.297,107.214)
C5: (57.985,12.053,106.034)
C4: (58.228,13.413,106.139)
P: (54.811,13.237,102.470)
C4': (56.417,16.596,103.684)
C2': (58.407,15.509,102.968)
C2: (58.581,13.272,108.303)
N1: (58.373,11.949,108.355)
N3: (58.536,14.092,107.258)
N6: (57.862,9.980,107.264)
N7: (57.697,11.703,104.724)
N9: (58.083,13.918,104.868)
O5': (55.705,14.368,103.145)
O3': (58.265,17.953,102.908)
OP1: (62.380,3.240,98.357)
OP2: (61.918,4.704,100.420)
C3': (59.284,5.961,97.820)
C1': (57.332,5.891,99.118)
C5': (59.584,3.423,97.931)
O6: (58.552,7.623,104.725)
O4': (57.605,4.568,98.684)
C8: (58.476,5.102,101.257)
C2: (56.908,9.112,101.952)
C6: (58.111,7.726,103.577)
C5: (58.165,6.783,102.519)
C4: (57.580,7.108,101.313)
P: (61.627,3.489,99.614)
C4': (58.652,4.584,97.675)
C2': (58.086,6.829,98.177)
O2': (57.259,7.136,97.072)
N1: (57.452,8.887,103.192)
N2: (56.318,10.294,101.771)
N3: (56.942,8.241,100.963)
N7: (58.730,5.517,102.468)
N9: (57.779,6.021,100.504)
O5': (60.068,3.471,99.288)
O3': (59.961,6.371,96.637)
OP2: (61.918,4.704,100.420)
C3': (59.284,5.961,97.820)
C1': (57.332,5.891,99.118)
C5': (59.584,3.423,97.931)
O6: (58.552,7.623,104.725)
O4': (57.605,4.568,98.684)
C8: (58.476,5.102,101.257)
C2: (56.908,9.112,101.952)
C6: (58.111,7.726,103.577)
C5: (58.165,6.783,102.519)
C4: (57.580,7.108,101.313)
P: (61.627,3.489,99.614)
C4': (58.652,4.584,97.675)
C2': (58.086,6.829,98.177)
O2': (57.259,7.136,97.072)
N1: (57.452,8.887,103.192)
N2: (56.318,10.294,101.771)
N3: (56.942,8.241,100.963)
N7: (58.730,5.517,102.468)
N9: (57.779,6.021,100.504)
O5': (60.068,3.471,99.288)
O3': (59.961,6.371,96.637)
Image (generated by PyMOL):