Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0266:0265
Extra
PDB:
ATOM 1 O3' U A 265 89.228 98.779 -15.442 1.00 88.95 O
ATOM 2 P A A 266 88.011 98.967 -16.469 1.00 91.28 P
ATOM 3 OP1 A A 266 88.607 99.204 -17.807 1.00 91.69 O
ATOM 4 OP2 A A 266 87.056 99.954 -15.907 1.00 91.29 O
ATOM 5 O5' A A 266 87.285 97.547 -16.461 1.00 93.12 O
ATOM 6 C5' A A 266 87.843 96.418 -17.164 1.00 95.68 C
ATOM 7 C4' A A 266 86.822 95.312 -17.273 1.00 97.41 C
ATOM 8 O4' A A 266 86.619 94.690 -15.975 1.00 97.99 O
ATOM 9 C3' A A 266 85.430 95.763 -17.678 1.00 98.98 C
ATOM 10 O3' A A 266 85.308 96.014 -19.073 1.00101.91 O
ATOM 11 C2' A A 266 84.561 94.622 -17.167 1.00 98.97 C
ATOM 12 O2' A A 266 84.555 93.486 -18.010 1.00 97.89 O
ATOM 13 C1' A A 266 85.256 94.299 -15.840 1.00 99.09 C
ATOM 14 N9 A A 266 84.663 95.050 -14.727 1.00100.05 N
ATOM 15 C8 A A 266 85.001 96.309 -14.283 1.00100.47 C
ATOM 16 N7 A A 266 84.254 96.741 -13.294 1.00100.26 N
ATOM 17 C5 A A 266 83.371 95.694 -13.062 1.00 99.86 C
ATOM 18 C6 A A 266 82.317 95.530 -12.143 1.00 99.45 C
ATOM 19 N6 A A 266 81.953 96.463 -11.260 1.00100.23 N
ATOM 20 N1 A A 266 81.638 94.364 -12.167 1.00 98.10 N
ATOM 21 C2 A A 266 81.994 93.435 -13.058 1.00 98.16 C
ATOM 22 N3 A A 266 82.957 93.471 -13.977 1.00 99.30 N
ATOM 23 C4 A A 266 83.618 94.641 -13.928 1.00 99.79 C
ATOM 24 P C A 267 84.113 96.949 -19.613 1.00104.32 P
ATOM 25 OP1 C A 267 84.563 97.574 -20.885 1.00103.98 O
ATOM 26 OP2 C A 267 83.625 97.814 -18.508 1.00104.59 O
ATOM 27 O5' C A 267 82.972 95.896 -19.958 1.00105.53 O
TER
ATOM 1 O3' C B 264 89.571 102.189 -10.416 1.00 77.30 O
ATOM 2 P U B 265 88.701 102.155 -11.772 1.00 78.79 P
ATOM 3 OP1 U B 265 89.369 103.070 -12.730 1.00 79.51 O
ATOM 4 OP2 U B 265 87.270 102.372 -11.444 1.00 77.75 O
ATOM 5 O5' U B 265 88.881 100.653 -12.281 1.00 81.02 O
ATOM 6 C5' U B 265 90.180 100.158 -12.685 1.00 83.99 C
ATOM 7 C4' U B 265 90.084 98.718 -13.144 1.00 86.12 C
ATOM 8 O4' U B 265 89.822 97.849 -12.009 1.00 87.12 O
ATOM 9 C3' U B 265 88.951 98.404 -14.105 1.00 87.66 C
ATOM 10 O3' U B 265 89.228 98.779 -15.442 1.00 88.95 O
ATOM 11 C2' U B 265 88.776 96.899 -13.929 1.00 87.83 C
ATOM 12 O2' U B 265 89.711 96.115 -14.646 1.00 87.47 O
ATOM 13 C1' U B 265 89.014 96.752 -12.424 1.00 87.41 C
ATOM 14 N1 U B 265 87.757 96.768 -11.658 1.00 86.67 N
ATOM 15 C2 U B 265 87.215 95.547 -11.282 1.00 86.07 C
ATOM 16 O2 U B 265 87.730 94.475 -11.555 1.00 85.29 O
ATOM 17 N3 U B 265 86.040 95.629 -10.576 1.00 86.06 N
ATOM 18 C4 U B 265 85.361 96.777 -10.219 1.00 86.15 C
ATOM 19 O4 U B 265 84.303 96.683 -9.596 1.00 85.50 O
ATOM 20 C5 U B 265 85.981 97.995 -10.644 1.00 86.33 C
ATOM 21 C6 U B 265 87.128 97.952 -11.328 1.00 86.28 C
ATOM 22 P A B 266 88.011 98.967 -16.469 1.00 91.28 P
ATOM 23 OP1 A B 266 88.607 99.204 -17.807 1.00 91.69 O
ATOM 24 OP2 A B 266 87.056 99.954 -15.907 1.00 91.29 O
ATOM 25 O5' A B 266 87.285 97.547 -16.461 1.00 93.12 O
TER
ATOM 2 P A A 266 88.011 98.967 -16.469 1.00 91.28 P
ATOM 3 OP1 A A 266 88.607 99.204 -17.807 1.00 91.69 O
ATOM 4 OP2 A A 266 87.056 99.954 -15.907 1.00 91.29 O
ATOM 5 O5' A A 266 87.285 97.547 -16.461 1.00 93.12 O
ATOM 6 C5' A A 266 87.843 96.418 -17.164 1.00 95.68 C
ATOM 7 C4' A A 266 86.822 95.312 -17.273 1.00 97.41 C
ATOM 8 O4' A A 266 86.619 94.690 -15.975 1.00 97.99 O
ATOM 9 C3' A A 266 85.430 95.763 -17.678 1.00 98.98 C
ATOM 10 O3' A A 266 85.308 96.014 -19.073 1.00101.91 O
ATOM 11 C2' A A 266 84.561 94.622 -17.167 1.00 98.97 C
ATOM 12 O2' A A 266 84.555 93.486 -18.010 1.00 97.89 O
ATOM 13 C1' A A 266 85.256 94.299 -15.840 1.00 99.09 C
ATOM 14 N9 A A 266 84.663 95.050 -14.727 1.00100.05 N
ATOM 15 C8 A A 266 85.001 96.309 -14.283 1.00100.47 C
ATOM 16 N7 A A 266 84.254 96.741 -13.294 1.00100.26 N
ATOM 17 C5 A A 266 83.371 95.694 -13.062 1.00 99.86 C
ATOM 18 C6 A A 266 82.317 95.530 -12.143 1.00 99.45 C
ATOM 19 N6 A A 266 81.953 96.463 -11.260 1.00100.23 N
ATOM 20 N1 A A 266 81.638 94.364 -12.167 1.00 98.10 N
ATOM 21 C2 A A 266 81.994 93.435 -13.058 1.00 98.16 C
ATOM 22 N3 A A 266 82.957 93.471 -13.977 1.00 99.30 N
ATOM 23 C4 A A 266 83.618 94.641 -13.928 1.00 99.79 C
ATOM 24 P C A 267 84.113 96.949 -19.613 1.00104.32 P
ATOM 25 OP1 C A 267 84.563 97.574 -20.885 1.00103.98 O
ATOM 26 OP2 C A 267 83.625 97.814 -18.508 1.00104.59 O
ATOM 27 O5' C A 267 82.972 95.896 -19.958 1.00105.53 O
TER
ATOM 1 O3' C B 264 89.571 102.189 -10.416 1.00 77.30 O
ATOM 2 P U B 265 88.701 102.155 -11.772 1.00 78.79 P
ATOM 3 OP1 U B 265 89.369 103.070 -12.730 1.00 79.51 O
ATOM 4 OP2 U B 265 87.270 102.372 -11.444 1.00 77.75 O
ATOM 5 O5' U B 265 88.881 100.653 -12.281 1.00 81.02 O
ATOM 6 C5' U B 265 90.180 100.158 -12.685 1.00 83.99 C
ATOM 7 C4' U B 265 90.084 98.718 -13.144 1.00 86.12 C
ATOM 8 O4' U B 265 89.822 97.849 -12.009 1.00 87.12 O
ATOM 9 C3' U B 265 88.951 98.404 -14.105 1.00 87.66 C
ATOM 10 O3' U B 265 89.228 98.779 -15.442 1.00 88.95 O
ATOM 11 C2' U B 265 88.776 96.899 -13.929 1.00 87.83 C
ATOM 12 O2' U B 265 89.711 96.115 -14.646 1.00 87.47 O
ATOM 13 C1' U B 265 89.014 96.752 -12.424 1.00 87.41 C
ATOM 14 N1 U B 265 87.757 96.768 -11.658 1.00 86.67 N
ATOM 15 C2 U B 265 87.215 95.547 -11.282 1.00 86.07 C
ATOM 16 O2 U B 265 87.730 94.475 -11.555 1.00 85.29 O
ATOM 17 N3 U B 265 86.040 95.629 -10.576 1.00 86.06 N
ATOM 18 C4 U B 265 85.361 96.777 -10.219 1.00 86.15 C
ATOM 19 O4 U B 265 84.303 96.683 -9.596 1.00 85.50 O
ATOM 20 C5 U B 265 85.981 97.995 -10.644 1.00 86.33 C
ATOM 21 C6 U B 265 87.128 97.952 -11.328 1.00 86.28 C
ATOM 22 P A B 266 88.011 98.967 -16.469 1.00 91.28 P
ATOM 23 OP1 A B 266 88.607 99.204 -17.807 1.00 91.69 O
ATOM 24 OP2 A B 266 87.056 99.954 -15.907 1.00 91.29 O
ATOM 25 O5' A B 266 87.285 97.547 -16.461 1.00 93.12 O
TER
Atoms:
OP1: (88.607,99.204,-17.807)
OP2: (87.056,99.954,-15.907)
C3': (85.430,95.763,-17.678)
C1': (85.256,94.299,-15.840)
C5': (87.843,96.418,-17.164)
O4': (86.619,94.690,-15.975)
C8: (85.001,96.309,-14.283)
O2': (84.555,93.486,-18.010)
C6: (82.317,95.530,-12.143)
C5: (83.371,95.694,-13.062)
C4: (83.618,94.641,-13.928)
P: (88.011,98.967,-16.469)
C4': (86.822,95.312,-17.273)
C2': (84.561,94.622,-17.167)
C2: (81.994,93.435,-13.058)
N1: (81.638,94.364,-12.167)
N3: (82.957,93.471,-13.977)
N6: (81.953,96.463,-11.260)
N7: (84.254,96.741,-13.294)
N9: (84.663,95.050,-14.727)
O5': (87.285,97.547,-16.461)
O3': (85.308,96.014,-19.073)
OP2: (87.056,99.954,-15.907)
C3': (85.430,95.763,-17.678)
C1': (85.256,94.299,-15.840)
C5': (87.843,96.418,-17.164)
O4': (86.619,94.690,-15.975)
C8: (85.001,96.309,-14.283)
O2': (84.555,93.486,-18.010)
C6: (82.317,95.530,-12.143)
C5: (83.371,95.694,-13.062)
C4: (83.618,94.641,-13.928)
P: (88.011,98.967,-16.469)
C4': (86.822,95.312,-17.273)
C2': (84.561,94.622,-17.167)
C2: (81.994,93.435,-13.058)
N1: (81.638,94.364,-12.167)
N3: (82.957,93.471,-13.977)
N6: (81.953,96.463,-11.260)
N7: (84.254,96.741,-13.294)
N9: (84.663,95.050,-14.727)
O5': (87.285,97.547,-16.461)
O3': (85.308,96.014,-19.073)
C4: (85.361,96.777,-10.219)
N3: (86.040,95.629,-10.576)
OP1: (89.369,103.070,-12.730)
OP2: (87.270,102.372,-11.444)
C2: (87.215,95.547,-11.282)
C1': (89.014,96.752,-12.424)
C3': (88.951,98.404,-14.105)
O5': (88.881,100.653,-12.281)
O4': (89.822,97.849,-12.009)
C5': (90.180,100.158,-12.685)
P: (88.701,102.155,-11.772)
C4': (90.084,98.718,-13.144)
C2': (88.776,96.899,-13.929)
O2': (89.711,96.115,-14.646)
N1: (87.757,96.768,-11.658)
O4: (84.303,96.683,-9.596)
O2: (87.730,94.475,-11.555)
C6: (87.128,97.952,-11.328)
C5: (85.981,97.995,-10.644)
O3': (89.228,98.779,-15.442)
N3: (86.040,95.629,-10.576)
OP1: (89.369,103.070,-12.730)
OP2: (87.270,102.372,-11.444)
C2: (87.215,95.547,-11.282)
C1': (89.014,96.752,-12.424)
C3': (88.951,98.404,-14.105)
O5': (88.881,100.653,-12.281)
O4': (89.822,97.849,-12.009)
C5': (90.180,100.158,-12.685)
P: (88.701,102.155,-11.772)
C4': (90.084,98.718,-13.144)
C2': (88.776,96.899,-13.929)
O2': (89.711,96.115,-14.646)
N1: (87.757,96.768,-11.658)
O4: (84.303,96.683,-9.596)
O2: (87.730,94.475,-11.555)
C6: (87.128,97.952,-11.328)
C5: (85.981,97.995,-10.644)
O3': (89.228,98.779,-15.442)
Image (generated by PyMOL):