Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:01351:01394
Extra
PDB:
ATOM 1 O3' G A1350 41.956 178.971 83.983 1.00 52.68 O
ATOM 2 P A A1351 42.911 179.985 84.796 1.00 55.10 P
ATOM 3 OP1 A A1351 42.732 179.695 86.238 1.00 53.09 O
ATOM 4 OP2 A A1351 42.694 181.372 84.298 1.00 55.02 O
ATOM 5 O5' A A1351 44.380 179.522 84.386 1.00 54.52 O
ATOM 6 C5' A A1351 44.725 178.128 84.383 1.00 52.37 C
ATOM 7 C4' A A1351 46.209 177.950 84.542 1.00 50.94 C
ATOM 8 O4' A A1351 46.879 178.266 83.291 1.00 52.10 O
ATOM 9 C3' A A1351 46.867 178.812 85.610 1.00 50.88 C
ATOM 10 O3' A A1351 47.822 178.028 86.300 1.00 51.96 O
ATOM 11 C2' A A1351 47.558 179.895 84.784 1.00 51.42 C
ATOM 12 O2' A A1351 48.705 180.442 85.388 1.00 53.57 O
ATOM 13 C1' A A1351 47.984 179.099 83.560 1.00 51.75 C
ATOM 14 N9 A A1351 48.310 179.887 82.365 1.00 50.76 N
ATOM 15 C8 A A1351 48.037 181.207 82.102 1.00 50.23 C
ATOM 16 N7 A A1351 48.492 181.620 80.946 1.00 49.12 N
ATOM 17 C5 A A1351 49.098 180.499 80.405 1.00 48.56 C
ATOM 18 C6 A A1351 49.767 180.280 79.190 1.00 48.42 C
ATOM 19 N6 A A1351 49.940 181.217 78.258 1.00 48.21 N
ATOM 20 N1 A A1351 50.261 179.047 78.957 1.00 48.08 N
ATOM 21 C2 A A1351 50.085 178.104 79.884 1.00 49.25 C
ATOM 22 N3 A A1351 49.470 178.184 81.061 1.00 50.17 N
ATOM 23 C4 A A1351 48.993 179.424 81.264 1.00 49.67 C
ATOM 24 P A A1352 47.382 177.260 87.639 1.00 54.74 P
ATOM 25 OP1 A A1352 46.868 175.933 87.233 1.00 54.38 O
ATOM 26 OP2 A A1352 46.518 178.175 88.435 1.00 52.85 O
ATOM 27 O5' A A1352 48.740 177.034 88.435 1.00 52.49 O
TER
ATOM 1 O3' A B1393 47.247 174.530 76.890 1.00 48.16 O
ATOM 2 P U B1394 47.130 174.386 75.297 1.00 49.11 P
ATOM 3 OP1 U B1394 45.734 174.734 74.932 1.00 49.18 O
ATOM 4 OP2 U B1394 47.697 173.082 74.861 1.00 49.11 O
ATOM 5 O5' U B1394 48.083 175.537 74.766 1.00 46.16 O
ATOM 6 C5' U B1394 47.743 176.287 73.600 1.00 44.87 C
ATOM 7 C4' U B1394 48.180 177.716 73.769 1.00 43.46 C
ATOM 8 O4' U B1394 47.330 178.375 74.748 1.00 42.07 O
ATOM 9 C3' U B1394 49.610 177.898 74.258 1.00 42.39 C
ATOM 10 O3' U B1394 50.179 179.013 73.622 1.00 41.01 O
ATOM 11 C2' U B1394 49.434 178.168 75.744 1.00 42.97 C
ATOM 12 O2' U B1394 50.478 178.942 76.296 1.00 44.94 O
ATOM 13 C1' U B1394 48.131 178.954 75.752 1.00 41.77 C
ATOM 14 N1 U B1394 47.398 178.885 77.021 1.00 42.48 N
ATOM 15 C2 U B1394 46.864 180.058 77.509 1.00 43.10 C
ATOM 16 O2 U B1394 46.997 181.133 76.948 1.00 45.01 O
ATOM 17 N3 U B1394 46.172 179.932 78.684 1.00 42.09 N
ATOM 18 C4 U B1394 45.969 178.784 79.405 1.00 41.61 C
ATOM 19 O4 U B1394 45.272 178.827 80.415 1.00 44.26 O
ATOM 20 C5 U B1394 46.563 177.615 78.848 1.00 41.91 C
ATOM 21 C6 U B1394 47.240 177.701 77.702 1.00 42.30 C
ATOM 22 P C B1395 51.189 178.776 72.414 1.00 44.02 P
ATOM 23 OP1 C B1395 51.605 180.113 71.911 1.00 43.99 O
ATOM 24 OP2 C B1395 50.541 177.807 71.491 1.00 43.08 O
ATOM 25 O5' C B1395 52.433 178.049 73.094 1.00 44.26 O
TER
ATOM 2 P A A1351 42.911 179.985 84.796 1.00 55.10 P
ATOM 3 OP1 A A1351 42.732 179.695 86.238 1.00 53.09 O
ATOM 4 OP2 A A1351 42.694 181.372 84.298 1.00 55.02 O
ATOM 5 O5' A A1351 44.380 179.522 84.386 1.00 54.52 O
ATOM 6 C5' A A1351 44.725 178.128 84.383 1.00 52.37 C
ATOM 7 C4' A A1351 46.209 177.950 84.542 1.00 50.94 C
ATOM 8 O4' A A1351 46.879 178.266 83.291 1.00 52.10 O
ATOM 9 C3' A A1351 46.867 178.812 85.610 1.00 50.88 C
ATOM 10 O3' A A1351 47.822 178.028 86.300 1.00 51.96 O
ATOM 11 C2' A A1351 47.558 179.895 84.784 1.00 51.42 C
ATOM 12 O2' A A1351 48.705 180.442 85.388 1.00 53.57 O
ATOM 13 C1' A A1351 47.984 179.099 83.560 1.00 51.75 C
ATOM 14 N9 A A1351 48.310 179.887 82.365 1.00 50.76 N
ATOM 15 C8 A A1351 48.037 181.207 82.102 1.00 50.23 C
ATOM 16 N7 A A1351 48.492 181.620 80.946 1.00 49.12 N
ATOM 17 C5 A A1351 49.098 180.499 80.405 1.00 48.56 C
ATOM 18 C6 A A1351 49.767 180.280 79.190 1.00 48.42 C
ATOM 19 N6 A A1351 49.940 181.217 78.258 1.00 48.21 N
ATOM 20 N1 A A1351 50.261 179.047 78.957 1.00 48.08 N
ATOM 21 C2 A A1351 50.085 178.104 79.884 1.00 49.25 C
ATOM 22 N3 A A1351 49.470 178.184 81.061 1.00 50.17 N
ATOM 23 C4 A A1351 48.993 179.424 81.264 1.00 49.67 C
ATOM 24 P A A1352 47.382 177.260 87.639 1.00 54.74 P
ATOM 25 OP1 A A1352 46.868 175.933 87.233 1.00 54.38 O
ATOM 26 OP2 A A1352 46.518 178.175 88.435 1.00 52.85 O
ATOM 27 O5' A A1352 48.740 177.034 88.435 1.00 52.49 O
TER
ATOM 1 O3' A B1393 47.247 174.530 76.890 1.00 48.16 O
ATOM 2 P U B1394 47.130 174.386 75.297 1.00 49.11 P
ATOM 3 OP1 U B1394 45.734 174.734 74.932 1.00 49.18 O
ATOM 4 OP2 U B1394 47.697 173.082 74.861 1.00 49.11 O
ATOM 5 O5' U B1394 48.083 175.537 74.766 1.00 46.16 O
ATOM 6 C5' U B1394 47.743 176.287 73.600 1.00 44.87 C
ATOM 7 C4' U B1394 48.180 177.716 73.769 1.00 43.46 C
ATOM 8 O4' U B1394 47.330 178.375 74.748 1.00 42.07 O
ATOM 9 C3' U B1394 49.610 177.898 74.258 1.00 42.39 C
ATOM 10 O3' U B1394 50.179 179.013 73.622 1.00 41.01 O
ATOM 11 C2' U B1394 49.434 178.168 75.744 1.00 42.97 C
ATOM 12 O2' U B1394 50.478 178.942 76.296 1.00 44.94 O
ATOM 13 C1' U B1394 48.131 178.954 75.752 1.00 41.77 C
ATOM 14 N1 U B1394 47.398 178.885 77.021 1.00 42.48 N
ATOM 15 C2 U B1394 46.864 180.058 77.509 1.00 43.10 C
ATOM 16 O2 U B1394 46.997 181.133 76.948 1.00 45.01 O
ATOM 17 N3 U B1394 46.172 179.932 78.684 1.00 42.09 N
ATOM 18 C4 U B1394 45.969 178.784 79.405 1.00 41.61 C
ATOM 19 O4 U B1394 45.272 178.827 80.415 1.00 44.26 O
ATOM 20 C5 U B1394 46.563 177.615 78.848 1.00 41.91 C
ATOM 21 C6 U B1394 47.240 177.701 77.702 1.00 42.30 C
ATOM 22 P C B1395 51.189 178.776 72.414 1.00 44.02 P
ATOM 23 OP1 C B1395 51.605 180.113 71.911 1.00 43.99 O
ATOM 24 OP2 C B1395 50.541 177.807 71.491 1.00 43.08 O
ATOM 25 O5' C B1395 52.433 178.049 73.094 1.00 44.26 O
TER
Atoms:
OP1: (42.732,179.695,86.238)
OP2: (42.694,181.372,84.298)
C3': (46.867,178.812,85.610)
C1': (47.984,179.099,83.560)
C5': (44.725,178.128,84.383)
O4': (46.879,178.266,83.291)
C8: (48.037,181.207,82.102)
O2': (48.705,180.442,85.388)
C6: (49.767,180.280,79.190)
C5: (49.098,180.499,80.405)
C4: (48.993,179.424,81.264)
P: (42.911,179.985,84.796)
C4': (46.209,177.950,84.542)
C2': (47.558,179.895,84.784)
C2: (50.085,178.104,79.884)
N1: (50.261,179.047,78.957)
N3: (49.470,178.184,81.061)
N6: (49.940,181.217,78.258)
N7: (48.492,181.620,80.946)
N9: (48.310,179.887,82.365)
O5': (44.380,179.522,84.386)
O3': (47.822,178.028,86.300)
OP2: (42.694,181.372,84.298)
C3': (46.867,178.812,85.610)
C1': (47.984,179.099,83.560)
C5': (44.725,178.128,84.383)
O4': (46.879,178.266,83.291)
C8: (48.037,181.207,82.102)
O2': (48.705,180.442,85.388)
C6: (49.767,180.280,79.190)
C5: (49.098,180.499,80.405)
C4: (48.993,179.424,81.264)
P: (42.911,179.985,84.796)
C4': (46.209,177.950,84.542)
C2': (47.558,179.895,84.784)
C2: (50.085,178.104,79.884)
N1: (50.261,179.047,78.957)
N3: (49.470,178.184,81.061)
N6: (49.940,181.217,78.258)
N7: (48.492,181.620,80.946)
N9: (48.310,179.887,82.365)
O5': (44.380,179.522,84.386)
O3': (47.822,178.028,86.300)
C4: (45.969,178.784,79.405)
N3: (46.172,179.932,78.684)
OP1: (45.734,174.734,74.932)
OP2: (47.697,173.082,74.861)
C2: (46.864,180.058,77.509)
C1': (48.131,178.954,75.752)
C3': (49.610,177.898,74.258)
O5': (48.083,175.537,74.766)
O4': (47.330,178.375,74.748)
C5': (47.743,176.287,73.600)
P: (47.130,174.386,75.297)
C4': (48.180,177.716,73.769)
C2': (49.434,178.168,75.744)
O2': (50.478,178.942,76.296)
N1: (47.398,178.885,77.021)
O4: (45.272,178.827,80.415)
O2: (46.997,181.133,76.948)
C6: (47.240,177.701,77.702)
C5: (46.563,177.615,78.848)
O3': (50.179,179.013,73.622)
N3: (46.172,179.932,78.684)
OP1: (45.734,174.734,74.932)
OP2: (47.697,173.082,74.861)
C2: (46.864,180.058,77.509)
C1': (48.131,178.954,75.752)
C3': (49.610,177.898,74.258)
O5': (48.083,175.537,74.766)
O4': (47.330,178.375,74.748)
C5': (47.743,176.287,73.600)
P: (47.130,174.386,75.297)
C4': (48.180,177.716,73.769)
C2': (49.434,178.168,75.744)
O2': (50.478,178.942,76.296)
N1: (47.398,178.885,77.021)
O4: (45.272,178.827,80.415)
O2: (46.997,181.133,76.948)
C6: (47.240,177.701,77.702)
C5: (46.563,177.615,78.848)
O3': (50.179,179.013,73.622)
Image (generated by PyMOL):