Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11073:11072
Extra
PDB:
ATOM 1 O3' U A1072 22.296 -15.166 35.110 1.00 45.15 O
ATOM 2 P A A1073 23.455 -16.090 35.770 1.00 42.38 P
ATOM 3 OP1 A A1073 23.921 -17.006 34.671 1.00 42.61 O
ATOM 4 OP2 A A1073 22.891 -16.681 37.037 1.00 42.22 O
ATOM 5 O5' A A1073 24.612 -15.039 36.149 1.00 42.14 O
ATOM 6 C5' A A1073 25.063 -14.075 35.214 1.00 42.24 C
ATOM 7 C4' A A1073 25.243 -12.705 35.840 1.00 42.05 C
ATOM 8 O4' A A1073 24.132 -12.372 36.696 1.00 41.98 O
ATOM 9 C3' A A1073 26.468 -12.499 36.708 1.00 41.75 C
ATOM 10 O3' A A1073 27.589 -12.196 35.927 1.00 41.80 O
ATOM 11 C2' A A1073 26.069 -11.326 37.573 1.00 41.60 C
ATOM 12 O2' A A1073 26.277 -10.125 36.856 1.00 41.69 O
ATOM 13 C1' A A1073 24.567 -11.521 37.717 1.00 41.72 C
ATOM 14 N9 A A1073 24.148 -12.094 39.008 1.00 41.54 N
ATOM 15 C8 A A1073 23.598 -13.333 39.133 1.00 41.61 C
ATOM 16 N7 A A1073 23.177 -13.576 40.337 1.00 41.44 N
ATOM 17 C5 A A1073 23.431 -12.415 41.033 1.00 41.26 C
ATOM 18 C6 A A1073 23.177 -12.051 42.349 1.00 41.06 C
ATOM 19 N6 A A1073 22.666 -12.868 43.247 1.00 40.99 N
ATOM 20 N1 A A1073 23.501 -10.809 42.738 1.00 40.94 N
ATOM 21 C2 A A1073 24.107 -9.994 41.861 1.00 41.01 C
ATOM 22 N3 A A1073 24.401 -10.253 40.598 1.00 41.20 N
ATOM 23 C4 A A1073 24.018 -11.486 40.234 1.00 41.32 C
ATOM 24 P A A1074 29.017 -12.826 36.252 1.00 38.96 P
ATOM 25 OP1 A A1074 29.866 -12.588 35.019 1.00 39.13 O
ATOM 26 OP2 A A1074 28.800 -14.216 36.716 1.00 38.94 O
ATOM 27 O5' A A1074 29.508 -11.937 37.461 1.00 38.67 O
TER
ATOM 1 O3' G B1071 19.730 -17.122 40.174 1.00 42.63 O
ATOM 2 P U B1072 18.825 -17.222 38.846 1.00 44.92 P
ATOM 3 OP1 U B1072 17.457 -16.818 39.244 1.00 45.00 O
ATOM 4 OP2 U B1072 19.025 -18.531 38.286 1.00 45.07 O
ATOM 5 O5' U B1072 19.427 -16.138 37.878 1.00 44.97 O
ATOM 6 C5' U B1072 19.653 -16.420 36.518 1.00 45.23 C
ATOM 7 C4' U B1072 19.917 -15.153 35.771 1.00 45.29 C
ATOM 8 O4' U B1072 19.073 -14.124 36.322 1.00 45.24 O
ATOM 9 C3' U B1072 21.307 -14.556 35.924 1.00 45.07 C
ATOM 10 O3' U B1072 22.296 -15.166 35.110 1.00 45.15 O
ATOM 11 C2' U B1072 21.052 -13.099 35.585 1.00 45.11 C
ATOM 12 O2' U B1072 20.838 -12.926 34.203 1.00 45.43 O
ATOM 13 C1' U B1072 19.736 -12.882 36.282 1.00 45.13 C
ATOM 14 N1 U B1072 19.930 -12.410 37.653 1.00 44.82 N
ATOM 15 C2 U B1072 20.457 -11.143 37.783 1.00 44.70 C
ATOM 16 O2 U B1072 20.708 -10.416 36.847 1.00 44.84 O
ATOM 17 N3 U B1072 20.632 -10.708 39.047 1.00 44.44 N
ATOM 18 C4 U B1072 20.330 -11.391 40.190 1.00 44.28 C
ATOM 19 O4 U B1072 20.537 -10.813 41.250 1.00 44.06 O
ATOM 20 C5 U B1072 19.799 -12.715 40.005 1.00 44.40 C
ATOM 21 C6 U B1072 19.625 -13.171 38.758 1.00 44.67 C
ATOM 22 P A B1073 23.455 -16.090 35.770 1.00 42.38 P
ATOM 23 OP1 A B1073 23.921 -17.006 34.671 1.00 42.61 O
ATOM 24 OP2 A B1073 22.891 -16.681 37.037 1.00 42.22 O
ATOM 25 O5' A B1073 24.612 -15.039 36.149 1.00 42.14 O
TER
ATOM 2 P A A1073 23.455 -16.090 35.770 1.00 42.38 P
ATOM 3 OP1 A A1073 23.921 -17.006 34.671 1.00 42.61 O
ATOM 4 OP2 A A1073 22.891 -16.681 37.037 1.00 42.22 O
ATOM 5 O5' A A1073 24.612 -15.039 36.149 1.00 42.14 O
ATOM 6 C5' A A1073 25.063 -14.075 35.214 1.00 42.24 C
ATOM 7 C4' A A1073 25.243 -12.705 35.840 1.00 42.05 C
ATOM 8 O4' A A1073 24.132 -12.372 36.696 1.00 41.98 O
ATOM 9 C3' A A1073 26.468 -12.499 36.708 1.00 41.75 C
ATOM 10 O3' A A1073 27.589 -12.196 35.927 1.00 41.80 O
ATOM 11 C2' A A1073 26.069 -11.326 37.573 1.00 41.60 C
ATOM 12 O2' A A1073 26.277 -10.125 36.856 1.00 41.69 O
ATOM 13 C1' A A1073 24.567 -11.521 37.717 1.00 41.72 C
ATOM 14 N9 A A1073 24.148 -12.094 39.008 1.00 41.54 N
ATOM 15 C8 A A1073 23.598 -13.333 39.133 1.00 41.61 C
ATOM 16 N7 A A1073 23.177 -13.576 40.337 1.00 41.44 N
ATOM 17 C5 A A1073 23.431 -12.415 41.033 1.00 41.26 C
ATOM 18 C6 A A1073 23.177 -12.051 42.349 1.00 41.06 C
ATOM 19 N6 A A1073 22.666 -12.868 43.247 1.00 40.99 N
ATOM 20 N1 A A1073 23.501 -10.809 42.738 1.00 40.94 N
ATOM 21 C2 A A1073 24.107 -9.994 41.861 1.00 41.01 C
ATOM 22 N3 A A1073 24.401 -10.253 40.598 1.00 41.20 N
ATOM 23 C4 A A1073 24.018 -11.486 40.234 1.00 41.32 C
ATOM 24 P A A1074 29.017 -12.826 36.252 1.00 38.96 P
ATOM 25 OP1 A A1074 29.866 -12.588 35.019 1.00 39.13 O
ATOM 26 OP2 A A1074 28.800 -14.216 36.716 1.00 38.94 O
ATOM 27 O5' A A1074 29.508 -11.937 37.461 1.00 38.67 O
TER
ATOM 1 O3' G B1071 19.730 -17.122 40.174 1.00 42.63 O
ATOM 2 P U B1072 18.825 -17.222 38.846 1.00 44.92 P
ATOM 3 OP1 U B1072 17.457 -16.818 39.244 1.00 45.00 O
ATOM 4 OP2 U B1072 19.025 -18.531 38.286 1.00 45.07 O
ATOM 5 O5' U B1072 19.427 -16.138 37.878 1.00 44.97 O
ATOM 6 C5' U B1072 19.653 -16.420 36.518 1.00 45.23 C
ATOM 7 C4' U B1072 19.917 -15.153 35.771 1.00 45.29 C
ATOM 8 O4' U B1072 19.073 -14.124 36.322 1.00 45.24 O
ATOM 9 C3' U B1072 21.307 -14.556 35.924 1.00 45.07 C
ATOM 10 O3' U B1072 22.296 -15.166 35.110 1.00 45.15 O
ATOM 11 C2' U B1072 21.052 -13.099 35.585 1.00 45.11 C
ATOM 12 O2' U B1072 20.838 -12.926 34.203 1.00 45.43 O
ATOM 13 C1' U B1072 19.736 -12.882 36.282 1.00 45.13 C
ATOM 14 N1 U B1072 19.930 -12.410 37.653 1.00 44.82 N
ATOM 15 C2 U B1072 20.457 -11.143 37.783 1.00 44.70 C
ATOM 16 O2 U B1072 20.708 -10.416 36.847 1.00 44.84 O
ATOM 17 N3 U B1072 20.632 -10.708 39.047 1.00 44.44 N
ATOM 18 C4 U B1072 20.330 -11.391 40.190 1.00 44.28 C
ATOM 19 O4 U B1072 20.537 -10.813 41.250 1.00 44.06 O
ATOM 20 C5 U B1072 19.799 -12.715 40.005 1.00 44.40 C
ATOM 21 C6 U B1072 19.625 -13.171 38.758 1.00 44.67 C
ATOM 22 P A B1073 23.455 -16.090 35.770 1.00 42.38 P
ATOM 23 OP1 A B1073 23.921 -17.006 34.671 1.00 42.61 O
ATOM 24 OP2 A B1073 22.891 -16.681 37.037 1.00 42.22 O
ATOM 25 O5' A B1073 24.612 -15.039 36.149 1.00 42.14 O
TER
Atoms:
OP1: (23.921,-17.006,34.671)
OP2: (22.891,-16.681,37.037)
C3': (26.468,-12.499,36.708)
C1': (24.567,-11.521,37.717)
C5': (25.063,-14.075,35.214)
O4': (24.132,-12.372,36.696)
C8: (23.598,-13.333,39.133)
O2': (26.277,-10.125,36.856)
C6: (23.177,-12.051,42.349)
C5: (23.431,-12.415,41.033)
C4: (24.018,-11.486,40.234)
P: (23.455,-16.090,35.770)
C4': (25.243,-12.705,35.840)
C2': (26.069,-11.326,37.573)
C2: (24.107,-9.994,41.861)
N1: (23.501,-10.809,42.738)
N3: (24.401,-10.253,40.598)
N6: (22.666,-12.868,43.247)
N7: (23.177,-13.576,40.337)
N9: (24.148,-12.094,39.008)
O5': (24.612,-15.039,36.149)
O3': (27.589,-12.196,35.927)
OP2: (22.891,-16.681,37.037)
C3': (26.468,-12.499,36.708)
C1': (24.567,-11.521,37.717)
C5': (25.063,-14.075,35.214)
O4': (24.132,-12.372,36.696)
C8: (23.598,-13.333,39.133)
O2': (26.277,-10.125,36.856)
C6: (23.177,-12.051,42.349)
C5: (23.431,-12.415,41.033)
C4: (24.018,-11.486,40.234)
P: (23.455,-16.090,35.770)
C4': (25.243,-12.705,35.840)
C2': (26.069,-11.326,37.573)
C2: (24.107,-9.994,41.861)
N1: (23.501,-10.809,42.738)
N3: (24.401,-10.253,40.598)
N6: (22.666,-12.868,43.247)
N7: (23.177,-13.576,40.337)
N9: (24.148,-12.094,39.008)
O5': (24.612,-15.039,36.149)
O3': (27.589,-12.196,35.927)
C4: (20.330,-11.391,40.190)
N3: (20.632,-10.708,39.047)
OP1: (17.457,-16.818,39.244)
OP2: (19.025,-18.531,38.286)
C2: (20.457,-11.143,37.783)
C1': (19.736,-12.882,36.282)
C3': (21.307,-14.556,35.924)
O5': (19.427,-16.138,37.878)
O4': (19.073,-14.124,36.322)
C5': (19.653,-16.420,36.518)
P: (18.825,-17.222,38.846)
C4': (19.917,-15.153,35.771)
C2': (21.052,-13.099,35.585)
O2': (20.838,-12.926,34.203)
N1: (19.930,-12.410,37.653)
O4: (20.537,-10.813,41.250)
O2: (20.708,-10.416,36.847)
C6: (19.625,-13.171,38.758)
C5: (19.799,-12.715,40.005)
O3': (22.296,-15.166,35.110)
N3: (20.632,-10.708,39.047)
OP1: (17.457,-16.818,39.244)
OP2: (19.025,-18.531,38.286)
C2: (20.457,-11.143,37.783)
C1': (19.736,-12.882,36.282)
C3': (21.307,-14.556,35.924)
O5': (19.427,-16.138,37.878)
O4': (19.073,-14.124,36.322)
C5': (19.653,-16.420,36.518)
P: (18.825,-17.222,38.846)
C4': (19.917,-15.153,35.771)
C2': (21.052,-13.099,35.585)
O2': (20.838,-12.926,34.203)
N1: (19.930,-12.410,37.653)
O4: (20.537,-10.813,41.250)
O2: (20.708,-10.416,36.847)
C6: (19.625,-13.171,38.758)
C5: (19.799,-12.715,40.005)
O3': (22.296,-15.166,35.110)
Image (generated by PyMOL):