Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3PDR:A63:A47
Extra
PDB:
ATOM 1 O3' C A 62 1.309 60.242 11.170 1.00 28.36 O
ATOM 2 P C A 63 2.492 60.993 11.981 1.00 32.71 P
ATOM 3 OP1 C A 63 2.708 62.242 11.220 1.00 32.76 O
ATOM 4 OP2 C A 63 3.647 60.080 12.154 1.00 33.99 O
ATOM 5 O5' C A 63 1.842 61.243 13.421 1.00 29.34 O
ATOM 6 C5' C A 63 0.707 62.074 13.601 1.00 33.34 C
ATOM 7 C4' C A 63 0.050 61.825 14.934 1.00 31.02 C
ATOM 8 O4' C A 63 -0.224 60.403 15.074 1.00 33.15 O
ATOM 9 C3' C A 63 0.849 62.152 16.190 1.00 31.74 C
ATOM 10 O3' C A 63 0.887 63.532 16.524 1.00 29.06 O
ATOM 11 C2' C A 63 0.144 61.306 17.246 1.00 31.78 C
ATOM 12 O2' C A 63 -1.054 61.930 17.685 1.00 36.51 O
ATOM 13 C1' C A 63 -0.229 60.057 16.447 1.00 29.62 C
ATOM 14 N1 C A 63 0.689 58.960 16.818 1.00 30.43 N
ATOM 15 C2 C A 63 0.418 58.328 18.032 1.00 31.74 C
ATOM 16 O2 C A 63 -0.570 58.708 18.685 1.00 31.98 O
ATOM 17 N3 C A 63 1.226 57.332 18.461 1.00 30.50 N
ATOM 18 C4 C A 63 2.267 56.957 17.715 1.00 27.89 C
ATOM 19 N4 C A 63 3.029 55.963 18.184 1.00 28.84 N
ATOM 20 C5 C A 63 2.578 57.589 16.472 1.00 29.12 C
ATOM 21 C6 C A 63 1.770 58.585 16.065 1.00 31.22 C
ATOM 22 P A A 64 2.159 64.434 16.103 1.00 37.30 P
ATOM 23 OP1 A A 64 1.709 65.115 14.877 1.00 35.95 O
ATOM 24 OP2 A A 64 3.379 63.600 16.035 1.00 30.77 O
ATOM 25 O5' A A 64 2.305 65.443 17.331 1.00 30.41 O
TER
ATOM 1 O3' A B 46 3.152 55.675 23.111 1.00 30.33 O
ATOM 2 P A B 47 1.796 55.182 22.427 1.00 28.67 P
ATOM 3 OP1 A B 47 1.234 54.264 23.435 1.00 30.79 O
ATOM 4 OP2 A B 47 2.027 54.682 21.048 1.00 28.19 O
ATOM 5 O5' A B 47 0.985 56.542 22.344 1.00 28.52 O
ATOM 6 C5' A B 47 -0.350 56.488 21.867 1.00 31.10 C
ATOM 7 C4' A B 47 -1.288 57.101 22.870 1.00 30.34 C
ATOM 8 O4' A B 47 -0.936 58.485 23.112 1.00 34.42 O
ATOM 9 C3' A B 47 -2.744 57.154 22.454 1.00 32.44 C
ATOM 10 O3' A B 47 -3.376 55.909 22.672 1.00 34.11 O
ATOM 11 C2' A B 47 -3.294 58.287 23.312 1.00 35.72 C
ATOM 12 O2' A B 47 -3.547 57.835 24.636 1.00 33.75 O
ATOM 13 C1' A B 47 -2.102 59.245 23.348 1.00 35.57 C
ATOM 14 N9 A B 47 -2.186 60.273 22.296 1.00 34.38 N
ATOM 15 C8 A B 47 -1.600 60.262 21.055 1.00 33.33 C
ATOM 16 N7 A B 47 -1.863 61.331 20.342 1.00 34.93 N
ATOM 17 C5 A B 47 -2.671 62.091 21.173 1.00 33.17 C
ATOM 18 C6 A B 47 -3.290 63.338 21.006 1.00 38.23 C
ATOM 19 N6 A B 47 -3.185 64.082 19.899 1.00 40.16 N
ATOM 20 N1 A B 47 -4.040 63.804 22.036 1.00 44.24 N
ATOM 21 C2 A B 47 -4.150 63.064 23.150 1.00 39.83 C
ATOM 22 N3 A B 47 -3.607 61.877 23.419 1.00 37.31 N
ATOM 23 C4 A B 47 -2.874 61.451 22.380 1.00 34.81 C
ATOM 24 P A B 48 -4.305 55.258 21.540 1.00 37.35 P
ATOM 25 OP1 A B 48 -4.638 53.910 22.054 1.00 36.03 O
ATOM 26 OP2 A B 48 -3.592 55.389 20.248 1.00 36.43 O
ATOM 27 O5' A B 48 -5.582 56.189 21.544 1.00 41.18 O
TER
ATOM 2 P C A 63 2.492 60.993 11.981 1.00 32.71 P
ATOM 3 OP1 C A 63 2.708 62.242 11.220 1.00 32.76 O
ATOM 4 OP2 C A 63 3.647 60.080 12.154 1.00 33.99 O
ATOM 5 O5' C A 63 1.842 61.243 13.421 1.00 29.34 O
ATOM 6 C5' C A 63 0.707 62.074 13.601 1.00 33.34 C
ATOM 7 C4' C A 63 0.050 61.825 14.934 1.00 31.02 C
ATOM 8 O4' C A 63 -0.224 60.403 15.074 1.00 33.15 O
ATOM 9 C3' C A 63 0.849 62.152 16.190 1.00 31.74 C
ATOM 10 O3' C A 63 0.887 63.532 16.524 1.00 29.06 O
ATOM 11 C2' C A 63 0.144 61.306 17.246 1.00 31.78 C
ATOM 12 O2' C A 63 -1.054 61.930 17.685 1.00 36.51 O
ATOM 13 C1' C A 63 -0.229 60.057 16.447 1.00 29.62 C
ATOM 14 N1 C A 63 0.689 58.960 16.818 1.00 30.43 N
ATOM 15 C2 C A 63 0.418 58.328 18.032 1.00 31.74 C
ATOM 16 O2 C A 63 -0.570 58.708 18.685 1.00 31.98 O
ATOM 17 N3 C A 63 1.226 57.332 18.461 1.00 30.50 N
ATOM 18 C4 C A 63 2.267 56.957 17.715 1.00 27.89 C
ATOM 19 N4 C A 63 3.029 55.963 18.184 1.00 28.84 N
ATOM 20 C5 C A 63 2.578 57.589 16.472 1.00 29.12 C
ATOM 21 C6 C A 63 1.770 58.585 16.065 1.00 31.22 C
ATOM 22 P A A 64 2.159 64.434 16.103 1.00 37.30 P
ATOM 23 OP1 A A 64 1.709 65.115 14.877 1.00 35.95 O
ATOM 24 OP2 A A 64 3.379 63.600 16.035 1.00 30.77 O
ATOM 25 O5' A A 64 2.305 65.443 17.331 1.00 30.41 O
TER
ATOM 1 O3' A B 46 3.152 55.675 23.111 1.00 30.33 O
ATOM 2 P A B 47 1.796 55.182 22.427 1.00 28.67 P
ATOM 3 OP1 A B 47 1.234 54.264 23.435 1.00 30.79 O
ATOM 4 OP2 A B 47 2.027 54.682 21.048 1.00 28.19 O
ATOM 5 O5' A B 47 0.985 56.542 22.344 1.00 28.52 O
ATOM 6 C5' A B 47 -0.350 56.488 21.867 1.00 31.10 C
ATOM 7 C4' A B 47 -1.288 57.101 22.870 1.00 30.34 C
ATOM 8 O4' A B 47 -0.936 58.485 23.112 1.00 34.42 O
ATOM 9 C3' A B 47 -2.744 57.154 22.454 1.00 32.44 C
ATOM 10 O3' A B 47 -3.376 55.909 22.672 1.00 34.11 O
ATOM 11 C2' A B 47 -3.294 58.287 23.312 1.00 35.72 C
ATOM 12 O2' A B 47 -3.547 57.835 24.636 1.00 33.75 O
ATOM 13 C1' A B 47 -2.102 59.245 23.348 1.00 35.57 C
ATOM 14 N9 A B 47 -2.186 60.273 22.296 1.00 34.38 N
ATOM 15 C8 A B 47 -1.600 60.262 21.055 1.00 33.33 C
ATOM 16 N7 A B 47 -1.863 61.331 20.342 1.00 34.93 N
ATOM 17 C5 A B 47 -2.671 62.091 21.173 1.00 33.17 C
ATOM 18 C6 A B 47 -3.290 63.338 21.006 1.00 38.23 C
ATOM 19 N6 A B 47 -3.185 64.082 19.899 1.00 40.16 N
ATOM 20 N1 A B 47 -4.040 63.804 22.036 1.00 44.24 N
ATOM 21 C2 A B 47 -4.150 63.064 23.150 1.00 39.83 C
ATOM 22 N3 A B 47 -3.607 61.877 23.419 1.00 37.31 N
ATOM 23 C4 A B 47 -2.874 61.451 22.380 1.00 34.81 C
ATOM 24 P A B 48 -4.305 55.258 21.540 1.00 37.35 P
ATOM 25 OP1 A B 48 -4.638 53.910 22.054 1.00 36.03 O
ATOM 26 OP2 A B 48 -3.592 55.389 20.248 1.00 36.43 O
ATOM 27 O5' A B 48 -5.582 56.189 21.544 1.00 41.18 O
TER
Atoms:
C2: (0.418,58.328,18.032)
OP1: (2.708,62.242,11.220)
OP2: (3.647,60.080,12.154)
C4: (2.267,56.957,17.715)
O5': (1.842,61.243,13.421)
C3': (0.849,62.152,16.190)
C1': (-0.229,60.057,16.447)
O4': (-0.224,60.403,15.074)
C5': (0.707,62.074,13.601)
P: (2.492,60.993,11.981)
O2: (-0.570,58.708,18.685)
C4': (0.050,61.825,14.934)
C2': (0.144,61.306,17.246)
O2': (-1.054,61.930,17.685)
N1: (0.689,58.960,16.818)
N3: (1.226,57.332,18.461)
N4: (3.029,55.963,18.184)
C6: (1.770,58.585,16.065)
C5: (2.578,57.589,16.472)
O3': (0.887,63.532,16.524)
OP1: (2.708,62.242,11.220)
OP2: (3.647,60.080,12.154)
C4: (2.267,56.957,17.715)
O5': (1.842,61.243,13.421)
C3': (0.849,62.152,16.190)
C1': (-0.229,60.057,16.447)
O4': (-0.224,60.403,15.074)
C5': (0.707,62.074,13.601)
P: (2.492,60.993,11.981)
O2: (-0.570,58.708,18.685)
C4': (0.050,61.825,14.934)
C2': (0.144,61.306,17.246)
O2': (-1.054,61.930,17.685)
N1: (0.689,58.960,16.818)
N3: (1.226,57.332,18.461)
N4: (3.029,55.963,18.184)
C6: (1.770,58.585,16.065)
C5: (2.578,57.589,16.472)
O3': (0.887,63.532,16.524)
OP1: (1.234,54.264,23.435)
OP2: (2.027,54.682,21.048)
C3': (-2.744,57.154,22.454)
C1': (-2.102,59.245,23.348)
C5': (-0.350,56.488,21.867)
O4': (-0.936,58.485,23.112)
C8: (-1.600,60.262,21.055)
O2': (-3.547,57.835,24.636)
C6: (-3.290,63.338,21.006)
C5: (-2.671,62.091,21.173)
C4: (-2.874,61.451,22.380)
P: (1.796,55.182,22.427)
C4': (-1.288,57.101,22.870)
C2': (-3.294,58.287,23.312)
C2: (-4.150,63.064,23.150)
N1: (-4.040,63.804,22.036)
N3: (-3.607,61.877,23.419)
N6: (-3.185,64.082,19.899)
N7: (-1.863,61.331,20.342)
N9: (-2.186,60.273,22.296)
O5': (0.985,56.542,22.344)
O3': (-3.376,55.909,22.672)
OP2: (2.027,54.682,21.048)
C3': (-2.744,57.154,22.454)
C1': (-2.102,59.245,23.348)
C5': (-0.350,56.488,21.867)
O4': (-0.936,58.485,23.112)
C8: (-1.600,60.262,21.055)
O2': (-3.547,57.835,24.636)
C6: (-3.290,63.338,21.006)
C5: (-2.671,62.091,21.173)
C4: (-2.874,61.451,22.380)
P: (1.796,55.182,22.427)
C4': (-1.288,57.101,22.870)
C2': (-3.294,58.287,23.312)
C2: (-4.150,63.064,23.150)
N1: (-4.040,63.804,22.036)
N3: (-3.607,61.877,23.419)
N6: (-3.185,64.082,19.899)
N7: (-1.863,61.331,20.342)
N9: (-2.186,60.273,22.296)
O5': (0.985,56.542,22.344)
O3': (-3.376,55.909,22.672)
Image (generated by PyMOL):