Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12062:12063
Extra
PDB:
ATOM 1 O3' U A2061 -34.954 -17.636 58.342 1.00 84.07 O
ATOM 2 P A A2062 -35.233 -16.178 57.763 1.00 75.81 P
ATOM 3 OP1 A A2062 -35.251 -16.263 56.283 1.00 75.97 O
ATOM 4 OP2 A A2062 -34.261 -15.285 58.409 1.00 75.59 O
ATOM 5 O5' A A2062 -36.689 -15.871 58.291 1.00 75.88 O
ATOM 6 C5' A A2062 -36.904 -15.455 59.617 1.00 75.73 C
ATOM 7 C4' A A2062 -37.980 -14.417 59.686 1.00 75.76 C
ATOM 8 O4' A A2062 -37.804 -13.637 60.882 1.00 75.57 O
ATOM 9 C3' A A2062 -38.001 -13.414 58.542 1.00 75.81 C
ATOM 10 O3' A A2062 -38.835 -13.852 57.490 1.00 76.03 O
ATOM 11 C2' A A2062 -38.512 -12.139 59.193 1.00 75.71 C
ATOM 12 O2' A A2062 -39.938 -12.132 59.223 1.00 75.85 O
ATOM 13 C1' A A2062 -38.000 -12.278 60.622 1.00 75.52 C
ATOM 14 N9 A A2062 -36.721 -11.579 60.855 1.00 75.33 N
ATOM 15 C8 A A2062 -35.677 -11.217 60.044 1.00 75.29 C
ATOM 16 N7 A A2062 -34.703 -10.621 60.703 1.00 75.08 N
ATOM 17 C5 A A2062 -35.155 -10.605 62.025 1.00 74.99 C
ATOM 18 C6 A A2062 -34.635 -10.123 63.248 1.00 74.78 C
ATOM 19 N6 A A2062 -33.457 -9.520 63.357 1.00 74.62 N
ATOM 20 N1 A A2062 -35.367 -10.271 64.381 1.00 74.75 N
ATOM 21 C2 A A2062 -36.564 -10.865 64.310 1.00 74.91 C
ATOM 22 N3 A A2062 -37.149 -11.363 63.230 1.00 75.11 N
ATOM 23 C4 A A2062 -36.390 -11.200 62.122 1.00 75.14 C
ATOM 24 P A A2063 -38.408 -13.698 55.957 1.00119.94 P
ATOM 25 OP1 A A2063 -37.948 -15.028 55.484 1.00120.04 O
ATOM 26 OP2 A A2063 -37.487 -12.556 55.858 1.00119.79 O
ATOM 27 O5' A A2063 -39.782 -13.340 55.294 1.00120.12 O
TER
ATOM 1 O3' A B2062 -38.835 -13.852 57.490 1.00 76.03 O
ATOM 2 P A B2063 -38.408 -13.698 55.957 1.00119.94 P
ATOM 3 OP1 A B2063 -37.948 -15.028 55.484 1.00120.04 O
ATOM 4 OP2 A B2063 -37.487 -12.556 55.858 1.00119.79 O
ATOM 5 O5' A B2063 -39.782 -13.340 55.294 1.00120.12 O
ATOM 6 C5' A B2063 -40.240 -12.015 55.288 1.00120.08 C
ATOM 7 C4' A B2063 -40.690 -11.640 53.920 1.00120.24 C
ATOM 8 O4' A B2063 -41.906 -12.354 53.628 1.00120.44 O
ATOM 9 C3' A B2063 -41.000 -10.181 53.724 1.00120.19 C
ATOM 10 O3' A B2063 -40.812 -9.862 52.364 1.00120.30 O
ATOM 11 C2' A B2063 -42.475 -10.099 54.059 1.00120.30 C
ATOM 12 O2' A B2063 -43.154 -9.028 53.434 1.00120.36 O
ATOM 13 C1' A B2063 -42.994 -11.458 53.580 1.00120.49 C
ATOM 14 N9 A B2063 -44.032 -12.006 54.439 1.00120.54 N
ATOM 15 C8 A B2063 -43.857 -12.614 55.665 1.00120.43 C
ATOM 16 N7 A B2063 -44.980 -13.010 56.214 1.00120.51 N
ATOM 17 C5 A B2063 -45.939 -12.629 55.276 1.00120.68 C
ATOM 18 C6 A B2063 -47.338 -12.763 55.252 1.00120.83 C
ATOM 19 N6 A B2063 -48.046 -13.342 56.242 1.00120.83 N
ATOM 20 N1 A B2063 -47.977 -12.265 54.153 1.00120.97 N
ATOM 21 C2 A B2063 -47.264 -11.689 53.162 1.00120.97 C
ATOM 22 N3 A B2063 -45.953 -11.509 53.072 1.00120.84 N
ATOM 23 C4 A B2063 -45.363 -12.011 54.172 1.00120.70 C
ATOM 24 P C B2064 -40.217 -8.445 51.978 1.00 97.28 P
ATOM 25 OP1 C B2064 -39.956 -7.721 53.264 1.00 97.07 O
ATOM 26 OP2 C B2064 -41.153 -7.842 50.990 1.00 97.43 O
ATOM 27 O5' C B2064 -38.839 -8.830 51.264 1.00 97.24 O
TER
ATOM 2 P A A2062 -35.233 -16.178 57.763 1.00 75.81 P
ATOM 3 OP1 A A2062 -35.251 -16.263 56.283 1.00 75.97 O
ATOM 4 OP2 A A2062 -34.261 -15.285 58.409 1.00 75.59 O
ATOM 5 O5' A A2062 -36.689 -15.871 58.291 1.00 75.88 O
ATOM 6 C5' A A2062 -36.904 -15.455 59.617 1.00 75.73 C
ATOM 7 C4' A A2062 -37.980 -14.417 59.686 1.00 75.76 C
ATOM 8 O4' A A2062 -37.804 -13.637 60.882 1.00 75.57 O
ATOM 9 C3' A A2062 -38.001 -13.414 58.542 1.00 75.81 C
ATOM 10 O3' A A2062 -38.835 -13.852 57.490 1.00 76.03 O
ATOM 11 C2' A A2062 -38.512 -12.139 59.193 1.00 75.71 C
ATOM 12 O2' A A2062 -39.938 -12.132 59.223 1.00 75.85 O
ATOM 13 C1' A A2062 -38.000 -12.278 60.622 1.00 75.52 C
ATOM 14 N9 A A2062 -36.721 -11.579 60.855 1.00 75.33 N
ATOM 15 C8 A A2062 -35.677 -11.217 60.044 1.00 75.29 C
ATOM 16 N7 A A2062 -34.703 -10.621 60.703 1.00 75.08 N
ATOM 17 C5 A A2062 -35.155 -10.605 62.025 1.00 74.99 C
ATOM 18 C6 A A2062 -34.635 -10.123 63.248 1.00 74.78 C
ATOM 19 N6 A A2062 -33.457 -9.520 63.357 1.00 74.62 N
ATOM 20 N1 A A2062 -35.367 -10.271 64.381 1.00 74.75 N
ATOM 21 C2 A A2062 -36.564 -10.865 64.310 1.00 74.91 C
ATOM 22 N3 A A2062 -37.149 -11.363 63.230 1.00 75.11 N
ATOM 23 C4 A A2062 -36.390 -11.200 62.122 1.00 75.14 C
ATOM 24 P A A2063 -38.408 -13.698 55.957 1.00119.94 P
ATOM 25 OP1 A A2063 -37.948 -15.028 55.484 1.00120.04 O
ATOM 26 OP2 A A2063 -37.487 -12.556 55.858 1.00119.79 O
ATOM 27 O5' A A2063 -39.782 -13.340 55.294 1.00120.12 O
TER
ATOM 1 O3' A B2062 -38.835 -13.852 57.490 1.00 76.03 O
ATOM 2 P A B2063 -38.408 -13.698 55.957 1.00119.94 P
ATOM 3 OP1 A B2063 -37.948 -15.028 55.484 1.00120.04 O
ATOM 4 OP2 A B2063 -37.487 -12.556 55.858 1.00119.79 O
ATOM 5 O5' A B2063 -39.782 -13.340 55.294 1.00120.12 O
ATOM 6 C5' A B2063 -40.240 -12.015 55.288 1.00120.08 C
ATOM 7 C4' A B2063 -40.690 -11.640 53.920 1.00120.24 C
ATOM 8 O4' A B2063 -41.906 -12.354 53.628 1.00120.44 O
ATOM 9 C3' A B2063 -41.000 -10.181 53.724 1.00120.19 C
ATOM 10 O3' A B2063 -40.812 -9.862 52.364 1.00120.30 O
ATOM 11 C2' A B2063 -42.475 -10.099 54.059 1.00120.30 C
ATOM 12 O2' A B2063 -43.154 -9.028 53.434 1.00120.36 O
ATOM 13 C1' A B2063 -42.994 -11.458 53.580 1.00120.49 C
ATOM 14 N9 A B2063 -44.032 -12.006 54.439 1.00120.54 N
ATOM 15 C8 A B2063 -43.857 -12.614 55.665 1.00120.43 C
ATOM 16 N7 A B2063 -44.980 -13.010 56.214 1.00120.51 N
ATOM 17 C5 A B2063 -45.939 -12.629 55.276 1.00120.68 C
ATOM 18 C6 A B2063 -47.338 -12.763 55.252 1.00120.83 C
ATOM 19 N6 A B2063 -48.046 -13.342 56.242 1.00120.83 N
ATOM 20 N1 A B2063 -47.977 -12.265 54.153 1.00120.97 N
ATOM 21 C2 A B2063 -47.264 -11.689 53.162 1.00120.97 C
ATOM 22 N3 A B2063 -45.953 -11.509 53.072 1.00120.84 N
ATOM 23 C4 A B2063 -45.363 -12.011 54.172 1.00120.70 C
ATOM 24 P C B2064 -40.217 -8.445 51.978 1.00 97.28 P
ATOM 25 OP1 C B2064 -39.956 -7.721 53.264 1.00 97.07 O
ATOM 26 OP2 C B2064 -41.153 -7.842 50.990 1.00 97.43 O
ATOM 27 O5' C B2064 -38.839 -8.830 51.264 1.00 97.24 O
TER
Atoms:
OP1: (-35.251,-16.263,56.283)
OP2: (-34.261,-15.285,58.409)
C3': (-38.001,-13.414,58.542)
C1': (-38.000,-12.278,60.622)
C5': (-36.904,-15.455,59.617)
O4': (-37.804,-13.637,60.882)
C8: (-35.677,-11.217,60.044)
O2': (-39.938,-12.132,59.223)
C6: (-34.635,-10.123,63.248)
C5: (-35.155,-10.605,62.025)
C4: (-36.390,-11.200,62.122)
P: (-35.233,-16.178,57.763)
C4': (-37.980,-14.417,59.686)
C2': (-38.512,-12.139,59.193)
C2: (-36.564,-10.865,64.310)
N1: (-35.367,-10.271,64.381)
N3: (-37.149,-11.363,63.230)
N6: (-33.457,-9.520,63.357)
N7: (-34.703,-10.621,60.703)
N9: (-36.721,-11.579,60.855)
O5': (-36.689,-15.871,58.291)
O3': (-38.835,-13.852,57.490)
OP2: (-34.261,-15.285,58.409)
C3': (-38.001,-13.414,58.542)
C1': (-38.000,-12.278,60.622)
C5': (-36.904,-15.455,59.617)
O4': (-37.804,-13.637,60.882)
C8: (-35.677,-11.217,60.044)
O2': (-39.938,-12.132,59.223)
C6: (-34.635,-10.123,63.248)
C5: (-35.155,-10.605,62.025)
C4: (-36.390,-11.200,62.122)
P: (-35.233,-16.178,57.763)
C4': (-37.980,-14.417,59.686)
C2': (-38.512,-12.139,59.193)
C2: (-36.564,-10.865,64.310)
N1: (-35.367,-10.271,64.381)
N3: (-37.149,-11.363,63.230)
N6: (-33.457,-9.520,63.357)
N7: (-34.703,-10.621,60.703)
N9: (-36.721,-11.579,60.855)
O5': (-36.689,-15.871,58.291)
O3': (-38.835,-13.852,57.490)
OP1: (-37.948,-15.028,55.484)
OP2: (-37.487,-12.556,55.858)
C3': (-41.000,-10.181,53.724)
C1': (-42.994,-11.458,53.580)
C5': (-40.240,-12.015,55.288)
O4': (-41.906,-12.354,53.628)
C8: (-43.857,-12.614,55.665)
O2': (-43.154,-9.028,53.434)
C6: (-47.338,-12.763,55.252)
C5: (-45.939,-12.629,55.276)
C4: (-45.363,-12.011,54.172)
P: (-38.408,-13.698,55.957)
C4': (-40.690,-11.640,53.920)
C2': (-42.475,-10.099,54.059)
C2: (-47.264,-11.689,53.162)
N1: (-47.977,-12.265,54.153)
N3: (-45.953,-11.509,53.072)
N6: (-48.046,-13.342,56.242)
N7: (-44.980,-13.010,56.214)
N9: (-44.032,-12.006,54.439)
O5': (-39.782,-13.340,55.294)
O3': (-40.812,-9.862,52.364)
OP2: (-37.487,-12.556,55.858)
C3': (-41.000,-10.181,53.724)
C1': (-42.994,-11.458,53.580)
C5': (-40.240,-12.015,55.288)
O4': (-41.906,-12.354,53.628)
C8: (-43.857,-12.614,55.665)
O2': (-43.154,-9.028,53.434)
C6: (-47.338,-12.763,55.252)
C5: (-45.939,-12.629,55.276)
C4: (-45.363,-12.011,54.172)
P: (-38.408,-13.698,55.957)
C4': (-40.690,-11.640,53.920)
C2': (-42.475,-10.099,54.059)
C2: (-47.264,-11.689,53.162)
N1: (-47.977,-12.265,54.153)
N3: (-45.953,-11.509,53.072)
N6: (-48.046,-13.342,56.242)
N7: (-44.980,-13.010,56.214)
N9: (-44.032,-12.006,54.439)
O5': (-39.782,-13.340,55.294)
O3': (-40.812,-9.862,52.364)
Image (generated by PyMOL):