Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A586:A547
Extra
PDB:
ATOM 1 O3' A A 585 -17.258 110.700 87.767 1.00 73.61 O
ATOM 2 P C A 586 -17.521 112.286 87.834 1.00 73.85 P
ATOM 3 OP1 C A 586 -18.409 112.647 86.704 1.00 74.55 O
ATOM 4 OP2 C A 586 -16.224 112.989 87.992 1.00 74.68 O
ATOM 5 O5' C A 586 -18.347 112.463 89.182 1.00 75.89 O
ATOM 6 C5' C A 586 -19.665 111.898 89.322 1.00 78.82 C
ATOM 7 C4' C A 586 -20.264 112.264 90.663 1.00 81.58 C
ATOM 8 O4' C A 586 -19.595 111.547 91.735 1.00 82.74 O
ATOM 9 C3' C A 586 -20.166 113.726 91.069 1.00 82.36 C
ATOM 10 O3' C A 586 -21.167 114.536 90.459 1.00 83.24 O
ATOM 11 C2' C A 586 -20.332 113.652 92.581 1.00 83.37 C
ATOM 12 O2' C A 586 -21.684 113.578 92.991 1.00 82.36 O
ATOM 13 C1' C A 586 -19.588 112.350 92.909 1.00 84.24 C
ATOM 14 N1 C A 586 -18.188 112.604 93.302 1.00 86.85 N
ATOM 15 C2 C A 586 -17.866 112.737 94.667 1.00 88.90 C
ATOM 16 O2 C A 586 -18.748 112.567 95.529 1.00 91.50 O
ATOM 17 N3 C A 586 -16.596 113.040 95.010 1.00 89.39 N
ATOM 18 C4 C A 586 -15.661 113.189 94.066 1.00 88.66 C
ATOM 19 N4 C A 586 -14.423 113.508 94.456 1.00 88.88 N
ATOM 20 C5 C A 586 -15.951 113.023 92.687 1.00 87.92 C
ATOM 21 C6 C A 586 -17.212 112.734 92.352 1.00 87.69 C
ATOM 22 P G A 587 -20.856 116.081 90.140 1.00 83.15 P
ATOM 23 OP1 G A 587 -22.070 116.645 89.515 1.00 83.57 O
ATOM 24 OP2 G A 587 -19.555 116.177 89.434 1.00 84.63 O
ATOM 25 O5' G A 587 -20.690 116.747 91.573 1.00 82.73 O
TER
ATOM 1 O3' C B 546 -8.901 117.254 103.139 1.00 87.81 O
ATOM 2 P U B 547 -9.220 115.698 103.377 1.00 89.53 P
ATOM 3 OP1 U B 547 -8.348 115.236 104.488 1.00 89.81 O
ATOM 4 OP2 U B 547 -9.177 114.994 102.065 1.00 89.34 O
ATOM 5 O5' U B 547 -10.730 115.688 103.875 1.00 89.08 O
ATOM 6 C5' U B 547 -11.723 116.419 103.154 1.00 88.01 C
ATOM 7 C4' U B 547 -13.099 116.111 103.672 1.00 87.86 C
ATOM 8 O4' U B 547 -14.051 116.830 102.842 1.00 88.05 O
ATOM 9 C3' U B 547 -13.493 114.643 103.569 1.00 87.26 C
ATOM 10 O3' U B 547 -13.215 113.931 104.768 1.00 86.51 O
ATOM 11 C2' U B 547 -14.970 114.704 103.211 1.00 87.40 C
ATOM 12 O2' U B 547 -15.806 114.925 104.328 1.00 85.89 O
ATOM 13 C1' U B 547 -14.983 115.923 102.289 1.00 88.41 C
ATOM 14 N1 U B 547 -14.558 115.609 100.915 1.00 89.22 N
ATOM 15 C2 U B 547 -15.538 115.500 99.946 1.00 90.39 C
ATOM 16 O2 U B 547 -16.729 115.665 100.173 1.00 91.42 O
ATOM 17 N3 U B 547 -15.074 115.191 98.692 1.00 91.21 N
ATOM 18 C4 U B 547 -13.760 114.985 98.313 1.00 91.20 C
ATOM 19 O4 U B 547 -13.503 114.697 97.143 1.00 91.67 O
ATOM 20 C5 U B 547 -12.811 115.121 99.366 1.00 90.64 C
ATOM 21 C6 U B 547 -13.227 115.419 100.594 1.00 89.69 C
ATOM 22 P C B 548 -12.918 112.355 104.705 1.00 86.70 P
ATOM 23 OP1 C B 548 -13.022 111.840 106.092 1.00 87.05 O
ATOM 24 OP2 C B 548 -11.651 112.166 103.950 1.00 87.23 O
ATOM 25 O5' C B 548 -14.138 111.768 103.856 1.00 85.07 O
TER
ATOM 2 P C A 586 -17.521 112.286 87.834 1.00 73.85 P
ATOM 3 OP1 C A 586 -18.409 112.647 86.704 1.00 74.55 O
ATOM 4 OP2 C A 586 -16.224 112.989 87.992 1.00 74.68 O
ATOM 5 O5' C A 586 -18.347 112.463 89.182 1.00 75.89 O
ATOM 6 C5' C A 586 -19.665 111.898 89.322 1.00 78.82 C
ATOM 7 C4' C A 586 -20.264 112.264 90.663 1.00 81.58 C
ATOM 8 O4' C A 586 -19.595 111.547 91.735 1.00 82.74 O
ATOM 9 C3' C A 586 -20.166 113.726 91.069 1.00 82.36 C
ATOM 10 O3' C A 586 -21.167 114.536 90.459 1.00 83.24 O
ATOM 11 C2' C A 586 -20.332 113.652 92.581 1.00 83.37 C
ATOM 12 O2' C A 586 -21.684 113.578 92.991 1.00 82.36 O
ATOM 13 C1' C A 586 -19.588 112.350 92.909 1.00 84.24 C
ATOM 14 N1 C A 586 -18.188 112.604 93.302 1.00 86.85 N
ATOM 15 C2 C A 586 -17.866 112.737 94.667 1.00 88.90 C
ATOM 16 O2 C A 586 -18.748 112.567 95.529 1.00 91.50 O
ATOM 17 N3 C A 586 -16.596 113.040 95.010 1.00 89.39 N
ATOM 18 C4 C A 586 -15.661 113.189 94.066 1.00 88.66 C
ATOM 19 N4 C A 586 -14.423 113.508 94.456 1.00 88.88 N
ATOM 20 C5 C A 586 -15.951 113.023 92.687 1.00 87.92 C
ATOM 21 C6 C A 586 -17.212 112.734 92.352 1.00 87.69 C
ATOM 22 P G A 587 -20.856 116.081 90.140 1.00 83.15 P
ATOM 23 OP1 G A 587 -22.070 116.645 89.515 1.00 83.57 O
ATOM 24 OP2 G A 587 -19.555 116.177 89.434 1.00 84.63 O
ATOM 25 O5' G A 587 -20.690 116.747 91.573 1.00 82.73 O
TER
ATOM 1 O3' C B 546 -8.901 117.254 103.139 1.00 87.81 O
ATOM 2 P U B 547 -9.220 115.698 103.377 1.00 89.53 P
ATOM 3 OP1 U B 547 -8.348 115.236 104.488 1.00 89.81 O
ATOM 4 OP2 U B 547 -9.177 114.994 102.065 1.00 89.34 O
ATOM 5 O5' U B 547 -10.730 115.688 103.875 1.00 89.08 O
ATOM 6 C5' U B 547 -11.723 116.419 103.154 1.00 88.01 C
ATOM 7 C4' U B 547 -13.099 116.111 103.672 1.00 87.86 C
ATOM 8 O4' U B 547 -14.051 116.830 102.842 1.00 88.05 O
ATOM 9 C3' U B 547 -13.493 114.643 103.569 1.00 87.26 C
ATOM 10 O3' U B 547 -13.215 113.931 104.768 1.00 86.51 O
ATOM 11 C2' U B 547 -14.970 114.704 103.211 1.00 87.40 C
ATOM 12 O2' U B 547 -15.806 114.925 104.328 1.00 85.89 O
ATOM 13 C1' U B 547 -14.983 115.923 102.289 1.00 88.41 C
ATOM 14 N1 U B 547 -14.558 115.609 100.915 1.00 89.22 N
ATOM 15 C2 U B 547 -15.538 115.500 99.946 1.00 90.39 C
ATOM 16 O2 U B 547 -16.729 115.665 100.173 1.00 91.42 O
ATOM 17 N3 U B 547 -15.074 115.191 98.692 1.00 91.21 N
ATOM 18 C4 U B 547 -13.760 114.985 98.313 1.00 91.20 C
ATOM 19 O4 U B 547 -13.503 114.697 97.143 1.00 91.67 O
ATOM 20 C5 U B 547 -12.811 115.121 99.366 1.00 90.64 C
ATOM 21 C6 U B 547 -13.227 115.419 100.594 1.00 89.69 C
ATOM 22 P C B 548 -12.918 112.355 104.705 1.00 86.70 P
ATOM 23 OP1 C B 548 -13.022 111.840 106.092 1.00 87.05 O
ATOM 24 OP2 C B 548 -11.651 112.166 103.950 1.00 87.23 O
ATOM 25 O5' C B 548 -14.138 111.768 103.856 1.00 85.07 O
TER
Atoms:
C2: (-17.866,112.737,94.667)
OP1: (-18.409,112.647,86.704)
OP2: (-16.224,112.989,87.992)
C4: (-15.661,113.189,94.066)
O5': (-18.347,112.463,89.182)
C3': (-20.166,113.726,91.069)
C1': (-19.588,112.350,92.909)
O4': (-19.595,111.547,91.735)
C5': (-19.665,111.898,89.322)
P: (-17.521,112.286,87.834)
O2: (-18.748,112.567,95.529)
C4': (-20.264,112.264,90.663)
C2': (-20.332,113.652,92.581)
O2': (-21.684,113.578,92.991)
N1: (-18.188,112.604,93.302)
N3: (-16.596,113.040,95.010)
N4: (-14.423,113.508,94.456)
C6: (-17.212,112.734,92.352)
C5: (-15.951,113.023,92.687)
O3': (-21.167,114.536,90.459)
OP1: (-18.409,112.647,86.704)
OP2: (-16.224,112.989,87.992)
C4: (-15.661,113.189,94.066)
O5': (-18.347,112.463,89.182)
C3': (-20.166,113.726,91.069)
C1': (-19.588,112.350,92.909)
O4': (-19.595,111.547,91.735)
C5': (-19.665,111.898,89.322)
P: (-17.521,112.286,87.834)
O2: (-18.748,112.567,95.529)
C4': (-20.264,112.264,90.663)
C2': (-20.332,113.652,92.581)
O2': (-21.684,113.578,92.991)
N1: (-18.188,112.604,93.302)
N3: (-16.596,113.040,95.010)
N4: (-14.423,113.508,94.456)
C6: (-17.212,112.734,92.352)
C5: (-15.951,113.023,92.687)
O3': (-21.167,114.536,90.459)
C4: (-13.760,114.985,98.313)
N3: (-15.074,115.191,98.692)
OP1: (-8.348,115.236,104.488)
OP2: (-9.177,114.994,102.065)
C2: (-15.538,115.500,99.946)
C1': (-14.983,115.923,102.289)
C3': (-13.493,114.643,103.569)
O5': (-10.730,115.688,103.875)
O4': (-14.051,116.830,102.842)
C5': (-11.723,116.419,103.154)
P: (-9.220,115.698,103.377)
C4': (-13.099,116.111,103.672)
C2': (-14.970,114.704,103.211)
O2': (-15.806,114.925,104.328)
N1: (-14.558,115.609,100.915)
O4: (-13.503,114.697,97.143)
O2: (-16.729,115.665,100.173)
C6: (-13.227,115.419,100.594)
C5: (-12.811,115.121,99.366)
O3': (-13.215,113.931,104.768)
N3: (-15.074,115.191,98.692)
OP1: (-8.348,115.236,104.488)
OP2: (-9.177,114.994,102.065)
C2: (-15.538,115.500,99.946)
C1': (-14.983,115.923,102.289)
C3': (-13.493,114.643,103.569)
O5': (-10.730,115.688,103.875)
O4': (-14.051,116.830,102.842)
C5': (-11.723,116.419,103.154)
P: (-9.220,115.698,103.377)
C4': (-13.099,116.111,103.672)
C2': (-14.970,114.704,103.211)
O2': (-15.806,114.925,104.328)
N1: (-14.558,115.609,100.915)
O4: (-13.503,114.697,97.143)
O2: (-16.729,115.665,100.173)
C6: (-13.227,115.419,100.594)
C5: (-12.811,115.121,99.366)
O3': (-13.215,113.931,104.768)
Image (generated by PyMOL):