ClaRNA

Doublet info:

Details

Nucleotide types: AA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 2QWY:B12:B13

Extra

PDB:
ATOM 1 O3' U A 11 7.861 30.082 -0.345 1.00 62.32 O
ATOM 2 P A A 12 8.786 29.945 -1.642 1.00 64.19 P
ATOM 3 OP1 A A 12 8.514 31.129 -2.486 1.00 62.11 O
ATOM 4 OP2 A A 12 8.592 28.580 -2.199 1.00 64.56 O
ATOM 5 O5' A A 12 10.270 30.084 -1.086 1.00 64.30 O
ATOM 6 C5' A A 12 10.903 31.352 -1.037 1.00 66.56 C
ATOM 7 C4' A A 12 11.967 31.424 -2.091 1.00 68.08 C
ATOM 8 O4' A A 12 12.985 30.491 -1.693 1.00 67.73 O
ATOM 9 C3' A A 12 11.508 30.945 -3.462 1.00 69.63 C
ATOM 10 O3' A A 12 10.942 31.982 -4.285 1.00 70.47 O
ATOM 11 C2' A A 12 12.708 30.196 -4.054 1.00 70.12 C
ATOM 12 O2' A A 12 13.432 30.890 -5.056 1.00 72.73 O
ATOM 13 C1' A A 12 13.593 29.941 -2.834 1.00 69.20 C
ATOM 14 N9 A A 12 13.824 28.534 -2.557 1.00 68.20 N
ATOM 15 C8 A A 12 12.952 27.485 -2.631 1.00 68.29 C
ATOM 16 N7 A A 12 13.478 26.340 -2.274 1.00 68.10 N
ATOM 17 C5 A A 12 14.788 26.663 -1.952 1.00 67.89 C
ATOM 18 C6 A A 12 15.868 25.897 -1.495 1.00 67.62 C
ATOM 19 N6 A A 12 15.808 24.586 -1.284 1.00 68.78 N
ATOM 20 N1 A A 12 17.034 26.532 -1.260 1.00 67.62 N
ATOM 21 C2 A A 12 17.102 27.846 -1.484 1.00 67.81 C
ATOM 22 N3 A A 12 16.161 28.672 -1.919 1.00 67.53 N
ATOM 23 C4 A A 12 15.013 28.009 -2.132 1.00 68.22 C
ATOM 24 P A A 13 11.773 33.329 -4.649 1.00 69.36 P
ATOM 25 OP1 A A 13 13.241 33.164 -4.465 1.00 68.13 O
ATOM 26 OP2 A A 13 11.068 34.439 -3.965 1.00 67.30 O
ATOM 27 O5' A A 13 11.486 33.476 -6.204 1.00 67.59 O
TER

ATOM 1 O3' A B 12 10.942 31.982 -4.285 1.00 70.47 O
ATOM 2 P A B 13 11.773 33.329 -4.649 1.00 69.36 P
ATOM 3 OP1 A B 13 13.241 33.164 -4.465 1.00 68.13 O
ATOM 4 OP2 A B 13 11.068 34.439 -3.965 1.00 67.30 O
ATOM 5 O5' A B 13 11.486 33.476 -6.204 1.00 67.59 O
ATOM 6 C5' A B 13 10.417 32.740 -6.774 1.00 69.16 C
ATOM 7 C4' A B 13 10.411 32.875 -8.268 1.00 70.01 C
ATOM 8 O4' A B 13 10.089 34.245 -8.615 1.00 69.71 O
ATOM 9 C3' A B 13 11.708 32.637 -9.024 1.00 71.72 C
ATOM 10 O3' A B 13 12.024 31.255 -9.166 1.00 76.39 O
ATOM 11 C2' A B 13 11.324 33.259 -10.351 1.00 70.77 C
ATOM 12 O2' A B 13 10.339 32.494 -11.025 1.00 70.42 O
ATOM 13 C1' A B 13 10.711 34.566 -9.849 1.00 69.81 C
ATOM 14 N9 A B 13 11.758 35.547 -9.587 1.00 67.72 N
ATOM 15 C8 A B 13 12.756 35.475 -8.649 1.00 67.96 C
ATOM 16 N7 A B 13 13.594 36.479 -8.691 1.00 67.11 N
ATOM 17 C5 A B 13 13.107 37.272 -9.715 1.00 66.42 C
ATOM 18 C6 A B 13 13.554 38.478 -10.257 1.00 66.22 C
ATOM 19 N6 A B 13 14.648 39.116 -9.833 1.00 65.04 N
ATOM 20 N1 A B 13 12.832 39.016 -11.266 1.00 66.51 N
ATOM 21 C2 A B 13 11.738 38.363 -11.693 1.00 64.58 C
ATOM 22 N3 A B 13 11.225 37.218 -11.267 1.00 63.36 N
ATOM 23 C4 A B 13 11.965 36.718 -10.265 1.00 66.16 C
ATOM 24 P C B 14 13.418 30.800 -9.864 1.00 79.37 P
ATOM 25 OP1 C B 14 14.341 30.359 -8.769 1.00 77.34 O
ATOM 26 OP2 C B 14 13.884 31.829 -10.846 1.00 79.33 O
ATOM 27 O5' C B 14 12.976 29.515 -10.704 1.00 76.94 O
TER

Atoms:
OP1: (8.514,31.129,-2.486)
OP2: (8.592,28.580,-2.199)
C3': (11.508,30.945,-3.462)
C1': (13.593,29.941,-2.834)
C5': (10.903,31.352,-1.037)
O4': (12.985,30.491,-1.693)
C8: (12.952,27.485,-2.631)
O2': (13.432,30.890,-5.056)
C6: (15.868,25.897,-1.495)
C5: (14.788,26.663,-1.952)
C4: (15.013,28.009,-2.132)
P: (8.786,29.945,-1.642)
C4': (11.967,31.424,-2.091)
C2': (12.708,30.196,-4.054)
C2: (17.102,27.846,-1.484)
N1: (17.034,26.532,-1.260)
N3: (16.161,28.672,-1.919)
N6: (15.808,24.586,-1.284)
N7: (13.478,26.340,-2.274)
N9: (13.824,28.534,-2.557)
O5': (10.270,30.084,-1.086)
O3': (10.942,31.982,-4.285)
OP1: (13.241,33.164,-4.465)
OP2: (11.068,34.439,-3.965)
C3': (11.708,32.637,-9.024)
C1': (10.711,34.566,-9.849)
C5': (10.417,32.740,-6.774)
O4': (10.089,34.245,-8.615)
C8: (12.756,35.475,-8.649)
O2': (10.339,32.494,-11.025)
C6: (13.554,38.478,-10.257)
C5: (13.107,37.272,-9.715)
C4: (11.965,36.718,-10.265)
P: (11.773,33.329,-4.649)
C4': (10.411,32.875,-8.268)
C2': (11.324,33.259,-10.351)
C2: (11.738,38.363,-11.693)
N1: (12.832,39.016,-11.266)
N3: (11.225,37.218,-11.267)
N6: (14.648,39.116,-9.833)
N7: (13.594,36.479,-8.691)
N9: (11.758,35.547,-9.587)
O5': (11.486,33.476,-6.204)
O3': (12.024,31.255,-9.166)
Image (generated by PyMOL):
PyMOL image
show in jmol