Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12683:12687
Extra
PDB:
ATOM 1 O3' A A2682 -5.833 30.605 45.010 1.00 47.52 O
ATOM 2 P C A2683 -5.749 30.740 43.417 1.00 53.27 P
ATOM 3 OP1 C A2683 -6.747 31.776 43.018 1.00 53.86 O
ATOM 4 OP2 C A2683 -5.858 29.375 42.848 1.00 53.05 O
ATOM 5 O5' C A2683 -4.289 31.300 43.183 1.00 53.09 O
ATOM 6 C5' C A2683 -4.007 32.652 43.462 1.00 53.33 C
ATOM 7 C4' C A2683 -2.543 32.900 43.642 1.00 53.02 C
ATOM 8 O4' C A2683 -1.932 31.819 44.394 1.00 52.47 O
ATOM 9 C3' C A2683 -1.712 32.952 42.381 1.00 53.04 C
ATOM 10 O3' C A2683 -1.881 34.144 41.674 1.00 53.52 O
ATOM 11 C2' C A2683 -0.335 32.793 42.952 1.00 52.59 C
ATOM 12 O2' C A2683 0.005 33.964 43.688 1.00 52.71 O
ATOM 13 C1' C A2683 -0.597 31.661 43.953 1.00 52.19 C
ATOM 14 N1 C A2683 -0.460 30.308 43.324 1.00 51.91 N
ATOM 15 C2 C A2683 0.784 29.725 43.058 1.00 51.53 C
ATOM 16 O2 C A2683 1.826 30.345 43.349 1.00 51.41 O
ATOM 17 N3 C A2683 0.829 28.509 42.485 1.00 51.31 N
ATOM 18 C4 C A2683 -0.292 27.873 42.185 1.00 51.46 C
ATOM 19 N4 C A2683 -0.280 26.669 41.621 1.00 51.27 N
ATOM 20 C5 C A2683 -1.544 28.445 42.451 1.00 51.84 C
ATOM 21 C6 C A2683 -1.590 29.635 43.011 1.00 52.05 C
ATOM 22 P U A2684 -2.010 34.101 40.095 1.00 55.25 P
ATOM 23 OP1 U A2684 -2.116 35.506 39.637 1.00 55.75 O
ATOM 24 OP2 U A2684 -3.092 33.134 39.753 1.00 55.31 O
ATOM 25 O5' U A2684 -0.627 33.489 39.676 1.00 54.83 O
TER
ATOM 1 O3' A B2686 3.764 24.442 36.232 1.00 43.88 O
ATOM 2 P U B2687 2.286 24.263 36.786 1.00 50.39 P
ATOM 3 OP1 U B2687 1.805 22.923 36.332 1.00 50.31 O
ATOM 4 OP2 U B2687 1.557 25.448 36.398 1.00 50.88 O
ATOM 5 O5' U B2687 2.481 24.262 38.354 1.00 50.04 O
ATOM 6 C5' U B2687 3.080 23.158 38.996 1.00 49.56 C
ATOM 7 C4' U B2687 4.534 23.402 39.327 1.00 49.25 C
ATOM 8 O4' U B2687 4.798 24.820 39.344 1.00 49.49 O
ATOM 9 C3' U B2687 4.948 22.871 40.698 1.00 48.81 C
ATOM 10 O3' U B2687 6.246 22.336 40.654 1.00 48.46 O
ATOM 11 C2' U B2687 4.989 24.099 41.561 1.00 48.91 C
ATOM 12 O2' U B2687 5.908 23.989 42.623 1.00 48.53 O
ATOM 13 C1' U B2687 5.432 25.147 40.559 1.00 49.22 C
ATOM 14 N1 U B2687 5.104 26.539 40.940 1.00 49.53 N
ATOM 15 C2 U B2687 3.889 26.893 41.474 1.00 49.77 C
ATOM 16 O2 U B2687 2.928 26.143 41.643 1.00 49.77 O
ATOM 17 N3 U B2687 3.800 28.236 41.763 1.00 50.05 N
ATOM 18 C4 U B2687 4.715 29.235 41.637 1.00 50.12 C
ATOM 19 O4 U B2687 4.425 30.374 41.997 1.00 50.41 O
ATOM 20 C5 U B2687 5.950 28.771 41.122 1.00 49.85 C
ATOM 21 C6 U B2687 6.089 27.486 40.810 1.00 49.57 C
ATOM 22 P A B2688 6.515 20.954 39.918 1.00 44.31 P
ATOM 23 OP1 A B2688 5.304 20.594 39.154 1.00 44.61 O
ATOM 24 OP2 A B2688 7.025 20.004 40.930 1.00 43.85 O
ATOM 25 O5' A B2688 7.639 21.396 38.912 1.00 44.36 O
TER
ATOM 2 P C A2683 -5.749 30.740 43.417 1.00 53.27 P
ATOM 3 OP1 C A2683 -6.747 31.776 43.018 1.00 53.86 O
ATOM 4 OP2 C A2683 -5.858 29.375 42.848 1.00 53.05 O
ATOM 5 O5' C A2683 -4.289 31.300 43.183 1.00 53.09 O
ATOM 6 C5' C A2683 -4.007 32.652 43.462 1.00 53.33 C
ATOM 7 C4' C A2683 -2.543 32.900 43.642 1.00 53.02 C
ATOM 8 O4' C A2683 -1.932 31.819 44.394 1.00 52.47 O
ATOM 9 C3' C A2683 -1.712 32.952 42.381 1.00 53.04 C
ATOM 10 O3' C A2683 -1.881 34.144 41.674 1.00 53.52 O
ATOM 11 C2' C A2683 -0.335 32.793 42.952 1.00 52.59 C
ATOM 12 O2' C A2683 0.005 33.964 43.688 1.00 52.71 O
ATOM 13 C1' C A2683 -0.597 31.661 43.953 1.00 52.19 C
ATOM 14 N1 C A2683 -0.460 30.308 43.324 1.00 51.91 N
ATOM 15 C2 C A2683 0.784 29.725 43.058 1.00 51.53 C
ATOM 16 O2 C A2683 1.826 30.345 43.349 1.00 51.41 O
ATOM 17 N3 C A2683 0.829 28.509 42.485 1.00 51.31 N
ATOM 18 C4 C A2683 -0.292 27.873 42.185 1.00 51.46 C
ATOM 19 N4 C A2683 -0.280 26.669 41.621 1.00 51.27 N
ATOM 20 C5 C A2683 -1.544 28.445 42.451 1.00 51.84 C
ATOM 21 C6 C A2683 -1.590 29.635 43.011 1.00 52.05 C
ATOM 22 P U A2684 -2.010 34.101 40.095 1.00 55.25 P
ATOM 23 OP1 U A2684 -2.116 35.506 39.637 1.00 55.75 O
ATOM 24 OP2 U A2684 -3.092 33.134 39.753 1.00 55.31 O
ATOM 25 O5' U A2684 -0.627 33.489 39.676 1.00 54.83 O
TER
ATOM 1 O3' A B2686 3.764 24.442 36.232 1.00 43.88 O
ATOM 2 P U B2687 2.286 24.263 36.786 1.00 50.39 P
ATOM 3 OP1 U B2687 1.805 22.923 36.332 1.00 50.31 O
ATOM 4 OP2 U B2687 1.557 25.448 36.398 1.00 50.88 O
ATOM 5 O5' U B2687 2.481 24.262 38.354 1.00 50.04 O
ATOM 6 C5' U B2687 3.080 23.158 38.996 1.00 49.56 C
ATOM 7 C4' U B2687 4.534 23.402 39.327 1.00 49.25 C
ATOM 8 O4' U B2687 4.798 24.820 39.344 1.00 49.49 O
ATOM 9 C3' U B2687 4.948 22.871 40.698 1.00 48.81 C
ATOM 10 O3' U B2687 6.246 22.336 40.654 1.00 48.46 O
ATOM 11 C2' U B2687 4.989 24.099 41.561 1.00 48.91 C
ATOM 12 O2' U B2687 5.908 23.989 42.623 1.00 48.53 O
ATOM 13 C1' U B2687 5.432 25.147 40.559 1.00 49.22 C
ATOM 14 N1 U B2687 5.104 26.539 40.940 1.00 49.53 N
ATOM 15 C2 U B2687 3.889 26.893 41.474 1.00 49.77 C
ATOM 16 O2 U B2687 2.928 26.143 41.643 1.00 49.77 O
ATOM 17 N3 U B2687 3.800 28.236 41.763 1.00 50.05 N
ATOM 18 C4 U B2687 4.715 29.235 41.637 1.00 50.12 C
ATOM 19 O4 U B2687 4.425 30.374 41.997 1.00 50.41 O
ATOM 20 C5 U B2687 5.950 28.771 41.122 1.00 49.85 C
ATOM 21 C6 U B2687 6.089 27.486 40.810 1.00 49.57 C
ATOM 22 P A B2688 6.515 20.954 39.918 1.00 44.31 P
ATOM 23 OP1 A B2688 5.304 20.594 39.154 1.00 44.61 O
ATOM 24 OP2 A B2688 7.025 20.004 40.930 1.00 43.85 O
ATOM 25 O5' A B2688 7.639 21.396 38.912 1.00 44.36 O
TER
Atoms:
C2: (0.784,29.725,43.058)
OP1: (-6.747,31.776,43.018)
OP2: (-5.858,29.375,42.848)
C4: (-0.292,27.873,42.185)
O5': (-4.289,31.300,43.183)
C3': (-1.712,32.952,42.381)
C1': (-0.597,31.661,43.953)
O4': (-1.932,31.819,44.394)
C5': (-4.007,32.652,43.462)
P: (-5.749,30.740,43.417)
O2: (1.826,30.345,43.349)
C4': (-2.543,32.900,43.642)
C2': (-0.335,32.793,42.952)
O2': (0.005,33.964,43.688)
N1: (-0.460,30.308,43.324)
N3: (0.829,28.509,42.485)
N4: (-0.280,26.669,41.621)
C6: (-1.590,29.635,43.011)
C5: (-1.544,28.445,42.451)
O3': (-1.881,34.144,41.674)
OP1: (-6.747,31.776,43.018)
OP2: (-5.858,29.375,42.848)
C4: (-0.292,27.873,42.185)
O5': (-4.289,31.300,43.183)
C3': (-1.712,32.952,42.381)
C1': (-0.597,31.661,43.953)
O4': (-1.932,31.819,44.394)
C5': (-4.007,32.652,43.462)
P: (-5.749,30.740,43.417)
O2: (1.826,30.345,43.349)
C4': (-2.543,32.900,43.642)
C2': (-0.335,32.793,42.952)
O2': (0.005,33.964,43.688)
N1: (-0.460,30.308,43.324)
N3: (0.829,28.509,42.485)
N4: (-0.280,26.669,41.621)
C6: (-1.590,29.635,43.011)
C5: (-1.544,28.445,42.451)
O3': (-1.881,34.144,41.674)
C4: (4.715,29.235,41.637)
N3: (3.800,28.236,41.763)
OP1: (1.805,22.923,36.332)
OP2: (1.557,25.448,36.398)
C2: (3.889,26.893,41.474)
C1': (5.432,25.147,40.559)
C3': (4.948,22.871,40.698)
O5': (2.481,24.262,38.354)
O4': (4.798,24.820,39.344)
C5': (3.080,23.158,38.996)
P: (2.286,24.263,36.786)
C4': (4.534,23.402,39.327)
C2': (4.989,24.099,41.561)
O2': (5.908,23.989,42.623)
N1: (5.104,26.539,40.940)
O4: (4.425,30.374,41.997)
O2: (2.928,26.143,41.643)
C6: (6.089,27.486,40.810)
C5: (5.950,28.771,41.122)
O3': (6.246,22.336,40.654)
N3: (3.800,28.236,41.763)
OP1: (1.805,22.923,36.332)
OP2: (1.557,25.448,36.398)
C2: (3.889,26.893,41.474)
C1': (5.432,25.147,40.559)
C3': (4.948,22.871,40.698)
O5': (2.481,24.262,38.354)
O4': (4.798,24.820,39.344)
C5': (3.080,23.158,38.996)
P: (2.286,24.263,36.786)
C4': (4.534,23.402,39.327)
C2': (4.989,24.099,41.561)
O2': (5.908,23.989,42.623)
N1: (5.104,26.539,40.940)
O4: (4.425,30.374,41.997)
O2: (2.928,26.143,41.643)
C6: (6.089,27.486,40.810)
C5: (5.950,28.771,41.122)
O3': (6.246,22.336,40.654)
Image (generated by PyMOL):