Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:92:924
Extra
PDB:
ATOM 1 O3' U A 1 54.354 12.278 103.250 1.00119.31 O
ATOM 2 P A A 2 54.557 13.318 102.036 1.00112.94 P
ATOM 3 OP1 A A 2 53.273 13.996 101.813 1.00112.67 O
ATOM 4 OP2 A A 2 55.205 12.605 100.909 1.00114.06 O
ATOM 5 O5' A A 2 55.603 14.380 102.600 1.00105.97 O
ATOM 6 C5' A A 2 55.194 15.696 103.013 1.00 94.56 C
ATOM 7 C4' A A 2 56.409 16.533 103.336 1.00 86.87 C
ATOM 8 O4' A A 2 57.136 15.914 104.422 1.00 85.34 O
ATOM 9 C3' A A 2 57.431 16.687 102.220 1.00 82.75 C
ATOM 10 O3' A A 2 58.166 17.898 102.387 1.00 75.59 O
ATOM 11 C2' A A 2 58.305 15.446 102.400 1.00 83.50 C
ATOM 12 O2' A A 2 59.639 15.612 101.958 1.00 83.76 O
ATOM 13 C1' A A 2 58.250 15.206 103.913 1.00 84.96 C
ATOM 14 N9 A A 2 58.063 13.791 104.257 1.00 86.43 N
ATOM 15 C8 A A 2 57.716 12.748 103.424 1.00 86.11 C
ATOM 16 N7 A A 2 57.612 11.593 104.032 1.00 85.65 N
ATOM 17 C5 A A 2 57.915 11.885 105.353 1.00 86.50 C
ATOM 18 C6 A A 2 57.978 11.083 106.503 1.00 86.92 C
ATOM 19 N6 A A 2 57.740 9.770 106.502 1.00 87.08 N
ATOM 20 N1 A A 2 58.301 11.684 107.669 1.00 87.11 N
ATOM 21 C2 A A 2 58.543 13.003 107.668 1.00 86.75 C
ATOM 22 N3 A A 2 58.518 13.864 106.653 1.00 86.42 N
ATOM 23 C4 A A 2 58.194 13.236 105.509 1.00 86.69 C
ATOM 24 P G A 3 57.875 19.158 101.425 1.00 68.36 P
ATOM 25 OP1 G A 3 58.981 20.114 101.641 1.00 69.74 O
ATOM 26 OP2 G A 3 56.479 19.597 101.657 1.00 69.32 O
ATOM 27 O5' G A 3 57.954 18.589 99.936 1.00 63.70 O
TER
ATOM 1 O3' U B 23 61.894 1.999 99.891 1.00127.41 O
ATOM 2 P G B 24 61.902 3.379 99.067 1.00122.46 P
ATOM 3 OP1 G B 24 62.567 3.113 97.761 1.00122.35 O
ATOM 4 OP2 G B 24 62.430 4.450 99.951 1.00122.38 O
ATOM 5 O5' G B 24 60.357 3.674 98.811 1.00117.75 O
ATOM 6 C5' G B 24 59.748 3.457 97.519 1.00110.01 C
ATOM 7 C4' G B 24 58.747 4.553 97.230 1.00103.57 C
ATOM 8 O4' G B 24 57.721 4.535 98.258 1.00102.63 O
ATOM 9 C3' G B 24 59.320 5.961 97.285 1.00 99.78 C
ATOM 10 O3' G B 24 59.914 6.331 96.045 1.00 94.10 O
ATOM 11 C2' G B 24 58.104 6.794 97.667 1.00 99.83 C
ATOM 12 O2' G B 24 57.221 7.029 96.588 1.00 99.19 O
ATOM 13 C1' G B 24 57.418 5.859 98.663 1.00100.65 C
ATOM 14 N9 G B 24 57.864 6.024 100.047 1.00100.98 N
ATOM 15 C8 G B 24 58.565 5.118 100.814 1.00100.81 C
ATOM 16 N7 G B 24 58.790 5.537 102.030 1.00100.47 N
ATOM 17 C5 G B 24 58.208 6.796 102.072 1.00100.90 C
ATOM 18 C6 G B 24 58.115 7.735 103.136 1.00100.73 C
ATOM 19 O6 G B 24 58.516 7.629 104.297 1.00100.69 O
ATOM 20 N1 G B 24 57.462 8.895 102.738 1.00101.12 N
ATOM 21 C2 G B 24 56.949 9.122 101.485 1.00101.66 C
ATOM 22 N2 G B 24 56.369 10.311 101.294 1.00102.05 N
ATOM 23 N3 G B 24 57.006 8.250 100.492 1.00101.75 N
ATOM 24 C4 G B 24 57.646 7.118 100.851 1.00101.26 C
ATOM 25 P C B 25 61.213 7.280 96.028 1.00 89.01 P
ATOM 26 OP1 C B 25 61.565 7.467 94.599 1.00 89.23 O
ATOM 27 OP2 C B 25 62.236 6.766 96.974 1.00 88.90 O
ATOM 28 O5' C B 25 60.674 8.663 96.598 1.00 87.18 O
TER
ATOM 2 P A A 2 54.557 13.318 102.036 1.00112.94 P
ATOM 3 OP1 A A 2 53.273 13.996 101.813 1.00112.67 O
ATOM 4 OP2 A A 2 55.205 12.605 100.909 1.00114.06 O
ATOM 5 O5' A A 2 55.603 14.380 102.600 1.00105.97 O
ATOM 6 C5' A A 2 55.194 15.696 103.013 1.00 94.56 C
ATOM 7 C4' A A 2 56.409 16.533 103.336 1.00 86.87 C
ATOM 8 O4' A A 2 57.136 15.914 104.422 1.00 85.34 O
ATOM 9 C3' A A 2 57.431 16.687 102.220 1.00 82.75 C
ATOM 10 O3' A A 2 58.166 17.898 102.387 1.00 75.59 O
ATOM 11 C2' A A 2 58.305 15.446 102.400 1.00 83.50 C
ATOM 12 O2' A A 2 59.639 15.612 101.958 1.00 83.76 O
ATOM 13 C1' A A 2 58.250 15.206 103.913 1.00 84.96 C
ATOM 14 N9 A A 2 58.063 13.791 104.257 1.00 86.43 N
ATOM 15 C8 A A 2 57.716 12.748 103.424 1.00 86.11 C
ATOM 16 N7 A A 2 57.612 11.593 104.032 1.00 85.65 N
ATOM 17 C5 A A 2 57.915 11.885 105.353 1.00 86.50 C
ATOM 18 C6 A A 2 57.978 11.083 106.503 1.00 86.92 C
ATOM 19 N6 A A 2 57.740 9.770 106.502 1.00 87.08 N
ATOM 20 N1 A A 2 58.301 11.684 107.669 1.00 87.11 N
ATOM 21 C2 A A 2 58.543 13.003 107.668 1.00 86.75 C
ATOM 22 N3 A A 2 58.518 13.864 106.653 1.00 86.42 N
ATOM 23 C4 A A 2 58.194 13.236 105.509 1.00 86.69 C
ATOM 24 P G A 3 57.875 19.158 101.425 1.00 68.36 P
ATOM 25 OP1 G A 3 58.981 20.114 101.641 1.00 69.74 O
ATOM 26 OP2 G A 3 56.479 19.597 101.657 1.00 69.32 O
ATOM 27 O5' G A 3 57.954 18.589 99.936 1.00 63.70 O
TER
ATOM 1 O3' U B 23 61.894 1.999 99.891 1.00127.41 O
ATOM 2 P G B 24 61.902 3.379 99.067 1.00122.46 P
ATOM 3 OP1 G B 24 62.567 3.113 97.761 1.00122.35 O
ATOM 4 OP2 G B 24 62.430 4.450 99.951 1.00122.38 O
ATOM 5 O5' G B 24 60.357 3.674 98.811 1.00117.75 O
ATOM 6 C5' G B 24 59.748 3.457 97.519 1.00110.01 C
ATOM 7 C4' G B 24 58.747 4.553 97.230 1.00103.57 C
ATOM 8 O4' G B 24 57.721 4.535 98.258 1.00102.63 O
ATOM 9 C3' G B 24 59.320 5.961 97.285 1.00 99.78 C
ATOM 10 O3' G B 24 59.914 6.331 96.045 1.00 94.10 O
ATOM 11 C2' G B 24 58.104 6.794 97.667 1.00 99.83 C
ATOM 12 O2' G B 24 57.221 7.029 96.588 1.00 99.19 O
ATOM 13 C1' G B 24 57.418 5.859 98.663 1.00100.65 C
ATOM 14 N9 G B 24 57.864 6.024 100.047 1.00100.98 N
ATOM 15 C8 G B 24 58.565 5.118 100.814 1.00100.81 C
ATOM 16 N7 G B 24 58.790 5.537 102.030 1.00100.47 N
ATOM 17 C5 G B 24 58.208 6.796 102.072 1.00100.90 C
ATOM 18 C6 G B 24 58.115 7.735 103.136 1.00100.73 C
ATOM 19 O6 G B 24 58.516 7.629 104.297 1.00100.69 O
ATOM 20 N1 G B 24 57.462 8.895 102.738 1.00101.12 N
ATOM 21 C2 G B 24 56.949 9.122 101.485 1.00101.66 C
ATOM 22 N2 G B 24 56.369 10.311 101.294 1.00102.05 N
ATOM 23 N3 G B 24 57.006 8.250 100.492 1.00101.75 N
ATOM 24 C4 G B 24 57.646 7.118 100.851 1.00101.26 C
ATOM 25 P C B 25 61.213 7.280 96.028 1.00 89.01 P
ATOM 26 OP1 C B 25 61.565 7.467 94.599 1.00 89.23 O
ATOM 27 OP2 C B 25 62.236 6.766 96.974 1.00 88.90 O
ATOM 28 O5' C B 25 60.674 8.663 96.598 1.00 87.18 O
TER
Atoms:
OP1: (53.273,13.996,101.813)
OP2: (55.205,12.605,100.909)
C3': (57.431,16.687,102.220)
C1': (58.250,15.206,103.913)
C5': (55.194,15.696,103.013)
O4': (57.136,15.914,104.422)
C8: (57.716,12.748,103.424)
O2': (59.639,15.612,101.958)
C6: (57.978,11.083,106.503)
C5: (57.915,11.885,105.353)
C4: (58.194,13.236,105.509)
P: (54.557,13.318,102.036)
C4': (56.409,16.533,103.336)
C2': (58.305,15.446,102.400)
C2: (58.543,13.003,107.668)
N1: (58.301,11.684,107.669)
N3: (58.518,13.864,106.653)
N6: (57.740,9.770,106.502)
N7: (57.612,11.593,104.032)
N9: (58.063,13.791,104.257)
O5': (55.603,14.380,102.600)
O3': (58.166,17.898,102.387)
OP2: (55.205,12.605,100.909)
C3': (57.431,16.687,102.220)
C1': (58.250,15.206,103.913)
C5': (55.194,15.696,103.013)
O4': (57.136,15.914,104.422)
C8: (57.716,12.748,103.424)
O2': (59.639,15.612,101.958)
C6: (57.978,11.083,106.503)
C5: (57.915,11.885,105.353)
C4: (58.194,13.236,105.509)
P: (54.557,13.318,102.036)
C4': (56.409,16.533,103.336)
C2': (58.305,15.446,102.400)
C2: (58.543,13.003,107.668)
N1: (58.301,11.684,107.669)
N3: (58.518,13.864,106.653)
N6: (57.740,9.770,106.502)
N7: (57.612,11.593,104.032)
N9: (58.063,13.791,104.257)
O5': (55.603,14.380,102.600)
O3': (58.166,17.898,102.387)
OP1: (62.567,3.113,97.761)
OP2: (62.430,4.450,99.951)
C3': (59.320,5.961,97.285)
C1': (57.418,5.859,98.663)
C5': (59.748,3.457,97.519)
O6: (58.516,7.629,104.297)
O4': (57.721,4.535,98.258)
C8: (58.565,5.118,100.814)
C2: (56.949,9.122,101.485)
C6: (58.115,7.735,103.136)
C5: (58.208,6.796,102.072)
C4: (57.646,7.118,100.851)
P: (61.902,3.379,99.067)
C4': (58.747,4.553,97.230)
C2': (58.104,6.794,97.667)
O2': (57.221,7.029,96.588)
N1: (57.462,8.895,102.738)
N2: (56.369,10.311,101.294)
N3: (57.006,8.250,100.492)
N7: (58.790,5.537,102.030)
N9: (57.864,6.024,100.047)
O5': (60.357,3.674,98.811)
O3': (59.914,6.331,96.045)
OP2: (62.430,4.450,99.951)
C3': (59.320,5.961,97.285)
C1': (57.418,5.859,98.663)
C5': (59.748,3.457,97.519)
O6: (58.516,7.629,104.297)
O4': (57.721,4.535,98.258)
C8: (58.565,5.118,100.814)
C2: (56.949,9.122,101.485)
C6: (58.115,7.735,103.136)
C5: (58.208,6.796,102.072)
C4: (57.646,7.118,100.851)
P: (61.902,3.379,99.067)
C4': (58.747,4.553,97.230)
C2': (58.104,6.794,97.667)
O2': (57.221,7.029,96.588)
N1: (57.462,8.895,102.738)
N2: (56.369,10.311,101.294)
N3: (57.006,8.250,100.492)
N7: (58.790,5.537,102.030)
N9: (57.864,6.024,100.047)
O5': (60.357,3.674,98.811)
O3': (59.914,6.331,96.045)
Image (generated by PyMOL):