ClaRNA

Doublet info:

Details

Nucleotide types: GC
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3U5D:12548:12549

Extra

PDB:
ATOM 1 O3' U A2547 26.062 -39.444 72.416 1.00 40.00 O
ATOM 2 P G A2548 26.859 -38.865 71.160 1.00 38.84 P
ATOM 3 OP1 G A2548 27.717 -39.990 70.678 1.00 38.99 O
ATOM 4 OP2 G A2548 27.491 -37.614 71.612 1.00 38.59 O
ATOM 5 O5' G A2548 25.726 -38.519 70.089 1.00 38.83 O
ATOM 6 C5' G A2548 24.953 -39.541 69.470 1.00 39.07 C
ATOM 7 C4' G A2548 24.282 -39.060 68.196 1.00 39.03 C
ATOM 8 O4' G A2548 23.846 -40.227 67.449 1.00 39.28 O
ATOM 9 C3' G A2548 23.038 -38.186 68.385 1.00 38.96 C
ATOM 10 O3' G A2548 22.916 -37.245 67.314 1.00 38.82 O
ATOM 11 C2' G A2548 21.903 -39.202 68.311 1.00 39.23 C
ATOM 12 O2' G A2548 20.654 -38.675 67.926 1.00 39.25 O
ATOM 13 C1' G A2548 22.437 -40.217 67.293 1.00 39.39 C
ATOM 14 N9 G A2548 21.939 -41.593 67.522 1.00 39.69 N
ATOM 15 C8 G A2548 22.468 -42.622 68.297 1.00 39.85 C
ATOM 16 N7 G A2548 21.773 -43.712 68.295 1.00 40.13 N
ATOM 17 C5 G A2548 20.700 -43.385 67.491 1.00 40.16 C
ATOM 18 C6 G A2548 19.577 -44.154 67.104 1.00 40.43 C
ATOM 19 O6 G A2548 19.339 -45.337 67.439 1.00 40.71 O
ATOM 20 N1 G A2548 18.720 -43.440 66.256 1.00 40.38 N
ATOM 21 C2 G A2548 18.953 -42.170 65.830 1.00 40.11 C
ATOM 22 N2 G A2548 18.076 -41.641 65.003 1.00 40.11 N
ATOM 23 N3 G A2548 19.974 -41.427 66.177 1.00 39.86 N
ATOM 24 C4 G A2548 20.788 -42.102 67.006 1.00 39.90 C
ATOM 25 P C A2549 22.784 -35.665 67.637 1.00 42.80 P
ATOM 26 OP1 C A2549 22.176 -35.539 68.942 1.00 42.82 O
ATOM 27 OP2 C A2549 22.153 -35.011 66.478 1.00 42.76 O
ATOM 28 O5' C A2549 24.284 -35.217 67.737 1.00 42.61 O
TER

ATOM 1 O3' G B2548 22.916 -37.245 67.314 1.00 38.82 O
ATOM 2 P C B2549 22.784 -35.665 67.637 1.00 42.80 P
ATOM 3 OP1 C B2549 22.176 -35.539 68.942 1.00 42.82 O
ATOM 4 OP2 C B2549 22.153 -35.011 66.478 1.00 42.76 O
ATOM 5 O5' C B2549 24.284 -35.217 67.737 1.00 42.61 O
ATOM 6 C5' C B2549 24.985 -34.775 66.595 1.00 42.51 C
ATOM 7 C4' C B2549 26.316 -34.297 66.987 1.00 42.34 C
ATOM 8 O4' C B2549 26.165 -33.089 67.760 1.00 42.16 O
ATOM 9 C3' C B2549 27.083 -35.267 67.854 1.00 42.44 C
ATOM 10 O3' C B2549 28.451 -35.146 67.556 1.00 42.34 O
ATOM 11 C2' C B2549 26.863 -34.755 69.261 1.00 42.37 C
ATOM 12 O2' C B2549 27.917 -35.064 70.143 1.00 42.36 O
ATOM 13 C1' C B2549 26.750 -33.258 69.032 1.00 42.15 C
ATOM 14 N1 C B2549 25.894 -32.580 70.001 1.00 42.11 N
ATOM 15 C2 C B2549 26.571 -31.922 70.988 1.00 41.98 C
ATOM 16 O2 C B2549 27.797 -31.980 70.932 1.00 41.92 O
ATOM 17 N3 C B2549 25.874 -31.234 71.917 1.00 41.95 N
ATOM 18 C4 C B2549 24.538 -31.222 71.871 1.00 42.04 C
ATOM 19 N4 C B2549 23.921 -30.520 72.835 1.00 42.01 N
ATOM 20 C5 C B2549 23.818 -31.924 70.868 1.00 42.17 C
ATOM 21 C6 C B2549 24.528 -32.574 69.947 1.00 42.20 C
ATOM 22 P C B2550 29.111 -36.053 66.439 1.00 42.21 P
ATOM 23 OP1 C B2550 30.478 -35.898 66.602 1.00 42.11 O
ATOM 24 OP2 C B2550 28.522 -35.681 65.135 1.00 42.20 O
ATOM 25 O5' C B2550 28.665 -37.509 66.834 1.00 42.47 O
TER

Atoms:
OP1: (27.717,-39.990,70.678)
OP2: (27.491,-37.614,71.612)
C3': (23.038,-38.186,68.385)
C1': (22.437,-40.217,67.293)
C5': (24.953,-39.541,69.470)
O6: (19.339,-45.337,67.439)
O4': (23.846,-40.227,67.449)
C8: (22.468,-42.622,68.297)
C2: (18.953,-42.170,65.830)
C6: (19.577,-44.154,67.104)
C5: (20.700,-43.385,67.491)
C4: (20.788,-42.102,67.006)
P: (26.859,-38.865,71.160)
C4': (24.282,-39.060,68.196)
C2': (21.903,-39.202,68.311)
O2': (20.654,-38.675,67.926)
N1: (18.720,-43.440,66.256)
N2: (18.076,-41.641,65.003)
N3: (19.974,-41.427,66.177)
N7: (21.773,-43.712,68.295)
N9: (21.939,-41.593,67.522)
O5': (25.726,-38.519,70.089)
O3': (22.916,-37.245,67.314)
C2: (26.571,-31.922,70.988)
OP1: (22.176,-35.539,68.942)
OP2: (22.153,-35.011,66.478)
C4: (24.538,-31.222,71.871)
O5': (24.284,-35.217,67.737)
C3': (27.083,-35.267,67.854)
C1': (26.750,-33.258,69.032)
O4': (26.165,-33.089,67.760)
C5': (24.985,-34.775,66.595)
P: (22.784,-35.665,67.637)
O2: (27.797,-31.980,70.932)
C4': (26.316,-34.297,66.987)
C2': (26.863,-34.755,69.261)
O2': (27.917,-35.064,70.143)
N1: (25.894,-32.580,70.001)
N3: (25.874,-31.234,71.917)
N4: (23.921,-30.520,72.835)
C6: (24.528,-32.574,69.947)
C5: (23.818,-31.924,70.868)
O3': (28.451,-35.146,67.556)
Image (generated by PyMOL):
PyMOL image
show in jmol