Doublet info:
Details
Nucleotide types:
GC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DFU:N1:N2
Extra
PDB:
ATOM 1 P G A 1 11.039 43.806 -16.363 1.00 75.87 P
ATOM 2 OP1 G A 1 10.860 42.410 -15.883 1.00 76.12 O
ATOM 3 OP2 G A 1 11.934 44.069 -17.522 1.00 75.57 O
ATOM 4 O5' G A 1 9.591 44.420 -16.641 1.00 73.11 O
ATOM 5 C5' G A 1 8.990 44.402 -17.935 1.00 69.32 C
ATOM 6 C4' G A 1 7.847 45.398 -17.986 1.00 66.88 C
ATOM 7 O4' G A 1 8.369 46.719 -17.719 1.00 66.24 O
ATOM 8 C3' G A 1 7.134 45.522 -19.329 1.00 65.46 C
ATOM 9 O3' G A 1 5.946 44.730 -19.372 1.00 63.25 O
ATOM 10 C2' G A 1 6.615 46.964 -19.336 1.00 65.72 C
ATOM 11 O2' G A 1 5.285 47.063 -18.861 1.00 66.25 O
ATOM 12 C1' G A 1 7.542 47.672 -18.348 1.00 65.54 C
ATOM 13 N9 G A 1 8.351 48.775 -18.855 1.00 64.71 N
ATOM 14 C8 G A 1 7.963 50.091 -18.930 1.00 64.26 C
ATOM 15 N7 G A 1 8.900 50.877 -19.381 1.00 64.25 N
ATOM 16 C5 G A 1 9.971 50.030 -19.627 1.00 63.89 C
ATOM 17 C6 G A 1 11.267 50.316 -20.108 1.00 63.57 C
ATOM 18 O6 G A 1 11.746 51.410 -20.417 1.00 63.45 O
ATOM 19 N1 G A 1 12.039 49.165 -20.214 1.00 63.71 N
ATOM 20 C2 G A 1 11.618 47.899 -19.891 1.00 64.10 C
ATOM 21 N2 G A 1 12.514 46.917 -20.064 1.00 64.34 N
ATOM 22 N3 G A 1 10.408 47.618 -19.434 1.00 64.23 N
ATOM 23 C4 G A 1 9.642 48.725 -19.326 1.00 64.30 C
ATOM 24 P C A 2 5.976 43.159 -19.028 1.00 60.72 P
ATOM 25 OP1 C A 2 6.815 42.874 -17.839 1.00 61.58 O
ATOM 26 OP2 C A 2 6.229 42.429 -20.295 1.00 61.14 O
ATOM 27 O5' C A 2 4.469 42.888 -18.593 1.00 57.75 O
TER
ATOM 1 O3' G B 1 5.946 44.730 -19.372 1.00 63.25 O
ATOM 2 P C B 2 5.976 43.159 -19.028 1.00 60.72 P
ATOM 3 OP1 C B 2 6.815 42.874 -17.839 1.00 61.58 O
ATOM 4 OP2 C B 2 6.229 42.429 -20.295 1.00 61.14 O
ATOM 5 O5' C B 2 4.469 42.888 -18.593 1.00 57.75 O
ATOM 6 C5' C B 2 3.668 43.948 -18.071 1.00 51.93 C
ATOM 7 C4' C B 2 2.377 43.402 -17.516 1.00 48.24 C
ATOM 8 O4' C B 2 1.646 42.747 -18.585 1.00 46.74 O
ATOM 9 C3' C B 2 2.543 42.328 -16.456 1.00 46.21 C
ATOM 10 O3' C B 2 2.703 42.896 -15.164 1.00 44.21 O
ATOM 11 C2' C B 2 1.241 41.554 -16.580 1.00 46.03 C
ATOM 12 O2' C B 2 0.154 42.208 -15.955 1.00 46.64 O
ATOM 13 C1' C B 2 1.047 41.558 -18.096 1.00 46.05 C
ATOM 14 N1 C B 2 1.702 40.411 -18.748 1.00 44.72 N
ATOM 15 C2 C B 2 1.130 39.147 -18.612 1.00 44.48 C
ATOM 16 O2 C B 2 0.087 39.033 -17.949 1.00 43.60 O
ATOM 17 N3 C B 2 1.725 38.084 -19.204 1.00 44.80 N
ATOM 18 C4 C B 2 2.848 38.254 -19.907 1.00 44.03 C
ATOM 19 N4 C B 2 3.402 37.180 -20.471 1.00 43.98 N
ATOM 20 C5 C B 2 3.452 39.534 -20.061 1.00 44.57 C
ATOM 21 C6 C B 2 2.851 40.575 -19.472 1.00 44.13 C
ATOM 22 P C B 3 3.530 42.094 -14.048 1.00 42.64 P
ATOM 23 OP1 C B 3 3.692 42.967 -12.855 1.00 43.57 O
ATOM 24 OP2 C B 3 4.733 41.536 -14.718 1.00 41.66 O
ATOM 25 O5' C B 3 2.567 40.889 -13.653 1.00 40.78 O
TER
ATOM 2 OP1 G A 1 10.860 42.410 -15.883 1.00 76.12 O
ATOM 3 OP2 G A 1 11.934 44.069 -17.522 1.00 75.57 O
ATOM 4 O5' G A 1 9.591 44.420 -16.641 1.00 73.11 O
ATOM 5 C5' G A 1 8.990 44.402 -17.935 1.00 69.32 C
ATOM 6 C4' G A 1 7.847 45.398 -17.986 1.00 66.88 C
ATOM 7 O4' G A 1 8.369 46.719 -17.719 1.00 66.24 O
ATOM 8 C3' G A 1 7.134 45.522 -19.329 1.00 65.46 C
ATOM 9 O3' G A 1 5.946 44.730 -19.372 1.00 63.25 O
ATOM 10 C2' G A 1 6.615 46.964 -19.336 1.00 65.72 C
ATOM 11 O2' G A 1 5.285 47.063 -18.861 1.00 66.25 O
ATOM 12 C1' G A 1 7.542 47.672 -18.348 1.00 65.54 C
ATOM 13 N9 G A 1 8.351 48.775 -18.855 1.00 64.71 N
ATOM 14 C8 G A 1 7.963 50.091 -18.930 1.00 64.26 C
ATOM 15 N7 G A 1 8.900 50.877 -19.381 1.00 64.25 N
ATOM 16 C5 G A 1 9.971 50.030 -19.627 1.00 63.89 C
ATOM 17 C6 G A 1 11.267 50.316 -20.108 1.00 63.57 C
ATOM 18 O6 G A 1 11.746 51.410 -20.417 1.00 63.45 O
ATOM 19 N1 G A 1 12.039 49.165 -20.214 1.00 63.71 N
ATOM 20 C2 G A 1 11.618 47.899 -19.891 1.00 64.10 C
ATOM 21 N2 G A 1 12.514 46.917 -20.064 1.00 64.34 N
ATOM 22 N3 G A 1 10.408 47.618 -19.434 1.00 64.23 N
ATOM 23 C4 G A 1 9.642 48.725 -19.326 1.00 64.30 C
ATOM 24 P C A 2 5.976 43.159 -19.028 1.00 60.72 P
ATOM 25 OP1 C A 2 6.815 42.874 -17.839 1.00 61.58 O
ATOM 26 OP2 C A 2 6.229 42.429 -20.295 1.00 61.14 O
ATOM 27 O5' C A 2 4.469 42.888 -18.593 1.00 57.75 O
TER
ATOM 1 O3' G B 1 5.946 44.730 -19.372 1.00 63.25 O
ATOM 2 P C B 2 5.976 43.159 -19.028 1.00 60.72 P
ATOM 3 OP1 C B 2 6.815 42.874 -17.839 1.00 61.58 O
ATOM 4 OP2 C B 2 6.229 42.429 -20.295 1.00 61.14 O
ATOM 5 O5' C B 2 4.469 42.888 -18.593 1.00 57.75 O
ATOM 6 C5' C B 2 3.668 43.948 -18.071 1.00 51.93 C
ATOM 7 C4' C B 2 2.377 43.402 -17.516 1.00 48.24 C
ATOM 8 O4' C B 2 1.646 42.747 -18.585 1.00 46.74 O
ATOM 9 C3' C B 2 2.543 42.328 -16.456 1.00 46.21 C
ATOM 10 O3' C B 2 2.703 42.896 -15.164 1.00 44.21 O
ATOM 11 C2' C B 2 1.241 41.554 -16.580 1.00 46.03 C
ATOM 12 O2' C B 2 0.154 42.208 -15.955 1.00 46.64 O
ATOM 13 C1' C B 2 1.047 41.558 -18.096 1.00 46.05 C
ATOM 14 N1 C B 2 1.702 40.411 -18.748 1.00 44.72 N
ATOM 15 C2 C B 2 1.130 39.147 -18.612 1.00 44.48 C
ATOM 16 O2 C B 2 0.087 39.033 -17.949 1.00 43.60 O
ATOM 17 N3 C B 2 1.725 38.084 -19.204 1.00 44.80 N
ATOM 18 C4 C B 2 2.848 38.254 -19.907 1.00 44.03 C
ATOM 19 N4 C B 2 3.402 37.180 -20.471 1.00 43.98 N
ATOM 20 C5 C B 2 3.452 39.534 -20.061 1.00 44.57 C
ATOM 21 C6 C B 2 2.851 40.575 -19.472 1.00 44.13 C
ATOM 22 P C B 3 3.530 42.094 -14.048 1.00 42.64 P
ATOM 23 OP1 C B 3 3.692 42.967 -12.855 1.00 43.57 O
ATOM 24 OP2 C B 3 4.733 41.536 -14.718 1.00 41.66 O
ATOM 25 O5' C B 3 2.567 40.889 -13.653 1.00 40.78 O
TER
Atoms:
OP1: (10.860,42.410,-15.883)
OP2: (11.934,44.069,-17.522)
C3': (7.134,45.522,-19.329)
C1': (7.542,47.672,-18.348)
C5': (8.990,44.402,-17.935)
O6: (11.746,51.410,-20.417)
O4': (8.369,46.719,-17.719)
C8: (7.963,50.091,-18.930)
C2: (11.618,47.899,-19.891)
C6: (11.267,50.316,-20.108)
C5: (9.971,50.030,-19.627)
C4: (9.642,48.725,-19.326)
P: (11.039,43.806,-16.363)
C4': (7.847,45.398,-17.986)
C2': (6.615,46.964,-19.336)
O2': (5.285,47.063,-18.861)
N1: (12.039,49.165,-20.214)
N2: (12.514,46.917,-20.064)
N3: (10.408,47.618,-19.434)
N7: (8.900,50.877,-19.381)
N9: (8.351,48.775,-18.855)
O5': (9.591,44.420,-16.641)
O3': (5.946,44.730,-19.372)
OP2: (11.934,44.069,-17.522)
C3': (7.134,45.522,-19.329)
C1': (7.542,47.672,-18.348)
C5': (8.990,44.402,-17.935)
O6: (11.746,51.410,-20.417)
O4': (8.369,46.719,-17.719)
C8: (7.963,50.091,-18.930)
C2: (11.618,47.899,-19.891)
C6: (11.267,50.316,-20.108)
C5: (9.971,50.030,-19.627)
C4: (9.642,48.725,-19.326)
P: (11.039,43.806,-16.363)
C4': (7.847,45.398,-17.986)
C2': (6.615,46.964,-19.336)
O2': (5.285,47.063,-18.861)
N1: (12.039,49.165,-20.214)
N2: (12.514,46.917,-20.064)
N3: (10.408,47.618,-19.434)
N7: (8.900,50.877,-19.381)
N9: (8.351,48.775,-18.855)
O5': (9.591,44.420,-16.641)
O3': (5.946,44.730,-19.372)
C2: (1.130,39.147,-18.612)
OP1: (6.815,42.874,-17.839)
OP2: (6.229,42.429,-20.295)
C4: (2.848,38.254,-19.907)
O5': (4.469,42.888,-18.593)
C3': (2.543,42.328,-16.456)
C1': (1.047,41.558,-18.096)
O4': (1.646,42.747,-18.585)
C5': (3.668,43.948,-18.071)
P: (5.976,43.159,-19.028)
O2: (0.087,39.033,-17.949)
C4': (2.377,43.402,-17.516)
C2': (1.241,41.554,-16.580)
O2': (0.154,42.208,-15.955)
N1: (1.702,40.411,-18.748)
N3: (1.725,38.084,-19.204)
N4: (3.402,37.180,-20.471)
C6: (2.851,40.575,-19.472)
C5: (3.452,39.534,-20.061)
O3': (2.703,42.896,-15.164)
OP1: (6.815,42.874,-17.839)
OP2: (6.229,42.429,-20.295)
C4: (2.848,38.254,-19.907)
O5': (4.469,42.888,-18.593)
C3': (2.543,42.328,-16.456)
C1': (1.047,41.558,-18.096)
O4': (1.646,42.747,-18.585)
C5': (3.668,43.948,-18.071)
P: (5.976,43.159,-19.028)
O2: (0.087,39.033,-17.949)
C4': (2.377,43.402,-17.516)
C2': (1.241,41.554,-16.580)
O2': (0.154,42.208,-15.955)
N1: (1.702,40.411,-18.748)
N3: (1.725,38.084,-19.204)
N4: (3.402,37.180,-20.471)
C6: (2.851,40.575,-19.472)
C5: (3.452,39.534,-20.061)
O3': (2.703,42.896,-15.164)
Image (generated by PyMOL):