Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2J01:A2452:A2388
Extra
PDB:
ATOM 1 O3' G A2451 -31.033 106.953 174.523 1.00 3.23 O
ATOM 2 P C A2452 -29.868 107.634 173.657 1.00 29.37 P
ATOM 3 OP1 C A2452 -29.757 109.035 174.145 1.00 27.34 O
ATOM 4 OP2 C A2452 -30.122 107.373 172.212 1.00 27.34 O
ATOM 5 O5' C A2452 -28.567 106.848 174.131 1.00 1.04 O
ATOM 6 C5' C A2452 -27.982 107.139 175.415 1.00 1.04 C
ATOM 7 C4' C A2452 -26.752 106.302 175.643 1.00 1.04 C
ATOM 8 O4' C A2452 -27.133 104.914 175.585 1.00 1.04 O
ATOM 9 C3' C A2452 -25.653 106.475 174.604 1.00 1.04 C
ATOM 10 O3' C A2452 -24.782 107.545 175.000 1.00 1.04 O
ATOM 11 C2' C A2452 -24.964 105.108 174.602 1.00 1.04 C
ATOM 12 O2' C A2452 -24.004 104.914 175.601 1.00 1.04 O
ATOM 13 C1' C A2452 -26.104 104.170 174.972 1.00 1.04 C
ATOM 14 N1 C A2452 -26.654 103.457 173.823 1.00 6.97 N
ATOM 15 C2 C A2452 -25.963 102.357 173.351 1.00 6.97 C
ATOM 16 O2 C A2452 -24.923 102.021 173.928 1.00 6.97 O
ATOM 17 N3 C A2452 -26.440 101.682 172.288 1.00 6.97 N
ATOM 18 C4 C A2452 -27.577 102.070 171.716 1.00 6.97 C
ATOM 19 N4 C A2452 -28.019 101.371 170.677 1.00 6.97 N
ATOM 20 C5 C A2452 -28.312 103.190 172.186 1.00 6.97 C
ATOM 21 C6 C A2452 -27.817 103.855 173.228 1.00 6.97 C
ATOM 22 P G A2453 -24.650 108.868 174.090 1.00 11.17 P
ATOM 23 OP1 G A2453 -23.984 109.896 174.922 1.00 28.87 O
ATOM 24 OP2 G A2453 -25.966 109.165 173.469 1.00 28.87 O
ATOM 25 O5' G A2453 -23.621 108.466 172.947 1.00 0.79 O
TER
ATOM 1 O3' C B2387 -20.414 95.736 167.098 1.00 16.02 O
ATOM 2 P U B2388 -20.985 94.707 168.204 1.00 8.38 P
ATOM 3 OP1 U B2388 -20.196 93.470 167.977 1.00 6.07 O
ATOM 4 OP2 U B2388 -22.478 94.667 168.196 1.00 6.07 O
ATOM 5 O5' U B2388 -20.548 95.319 169.607 1.00 14.93 O
ATOM 6 C5' U B2388 -19.162 95.421 169.967 1.00 14.93 C
ATOM 7 C4' U B2388 -19.015 96.170 171.268 1.00 14.93 C
ATOM 8 O4' U B2388 -19.394 97.556 171.082 1.00 14.93 O
ATOM 9 C3' U B2388 -19.888 95.687 172.418 1.00 14.93 C
ATOM 10 O3' U B2388 -19.332 94.534 173.072 1.00 14.93 O
ATOM 11 C2' U B2388 -19.951 96.927 173.304 1.00 14.93 C
ATOM 12 O2' U B2388 -18.789 97.089 174.097 1.00 14.93 O
ATOM 13 C1' U B2388 -19.995 98.041 172.260 1.00 14.93 C
ATOM 14 N1 U B2388 -21.371 98.443 171.950 1.00 0.79 N
ATOM 15 C2 U B2388 -21.930 99.423 172.734 1.00 0.79 C
ATOM 16 O2 U B2388 -21.304 99.983 173.623 1.00 0.79 O
ATOM 17 N3 U B2388 -23.238 99.738 172.439 1.00 0.79 N
ATOM 18 C4 U B2388 -24.013 99.200 171.439 1.00 0.79 C
ATOM 19 O4 U B2388 -25.161 99.622 171.256 1.00 0.79 O
ATOM 20 C5 U B2388 -23.357 98.206 170.663 1.00 0.79 C
ATOM 21 C6 U B2388 -22.088 97.868 170.938 1.00 0.79 C
ATOM 22 P C B2389 -20.306 93.353 173.598 1.00 18.16 P
ATOM 23 OP1 C B2389 -19.403 92.285 174.080 1.00 16.49 O
ATOM 24 OP2 C B2389 -21.341 93.044 172.568 1.00 16.49 O
ATOM 25 O5' C B2389 -21.034 93.994 174.862 1.00 17.61 O
TER
ATOM 2 P C A2452 -29.868 107.634 173.657 1.00 29.37 P
ATOM 3 OP1 C A2452 -29.757 109.035 174.145 1.00 27.34 O
ATOM 4 OP2 C A2452 -30.122 107.373 172.212 1.00 27.34 O
ATOM 5 O5' C A2452 -28.567 106.848 174.131 1.00 1.04 O
ATOM 6 C5' C A2452 -27.982 107.139 175.415 1.00 1.04 C
ATOM 7 C4' C A2452 -26.752 106.302 175.643 1.00 1.04 C
ATOM 8 O4' C A2452 -27.133 104.914 175.585 1.00 1.04 O
ATOM 9 C3' C A2452 -25.653 106.475 174.604 1.00 1.04 C
ATOM 10 O3' C A2452 -24.782 107.545 175.000 1.00 1.04 O
ATOM 11 C2' C A2452 -24.964 105.108 174.602 1.00 1.04 C
ATOM 12 O2' C A2452 -24.004 104.914 175.601 1.00 1.04 O
ATOM 13 C1' C A2452 -26.104 104.170 174.972 1.00 1.04 C
ATOM 14 N1 C A2452 -26.654 103.457 173.823 1.00 6.97 N
ATOM 15 C2 C A2452 -25.963 102.357 173.351 1.00 6.97 C
ATOM 16 O2 C A2452 -24.923 102.021 173.928 1.00 6.97 O
ATOM 17 N3 C A2452 -26.440 101.682 172.288 1.00 6.97 N
ATOM 18 C4 C A2452 -27.577 102.070 171.716 1.00 6.97 C
ATOM 19 N4 C A2452 -28.019 101.371 170.677 1.00 6.97 N
ATOM 20 C5 C A2452 -28.312 103.190 172.186 1.00 6.97 C
ATOM 21 C6 C A2452 -27.817 103.855 173.228 1.00 6.97 C
ATOM 22 P G A2453 -24.650 108.868 174.090 1.00 11.17 P
ATOM 23 OP1 G A2453 -23.984 109.896 174.922 1.00 28.87 O
ATOM 24 OP2 G A2453 -25.966 109.165 173.469 1.00 28.87 O
ATOM 25 O5' G A2453 -23.621 108.466 172.947 1.00 0.79 O
TER
ATOM 1 O3' C B2387 -20.414 95.736 167.098 1.00 16.02 O
ATOM 2 P U B2388 -20.985 94.707 168.204 1.00 8.38 P
ATOM 3 OP1 U B2388 -20.196 93.470 167.977 1.00 6.07 O
ATOM 4 OP2 U B2388 -22.478 94.667 168.196 1.00 6.07 O
ATOM 5 O5' U B2388 -20.548 95.319 169.607 1.00 14.93 O
ATOM 6 C5' U B2388 -19.162 95.421 169.967 1.00 14.93 C
ATOM 7 C4' U B2388 -19.015 96.170 171.268 1.00 14.93 C
ATOM 8 O4' U B2388 -19.394 97.556 171.082 1.00 14.93 O
ATOM 9 C3' U B2388 -19.888 95.687 172.418 1.00 14.93 C
ATOM 10 O3' U B2388 -19.332 94.534 173.072 1.00 14.93 O
ATOM 11 C2' U B2388 -19.951 96.927 173.304 1.00 14.93 C
ATOM 12 O2' U B2388 -18.789 97.089 174.097 1.00 14.93 O
ATOM 13 C1' U B2388 -19.995 98.041 172.260 1.00 14.93 C
ATOM 14 N1 U B2388 -21.371 98.443 171.950 1.00 0.79 N
ATOM 15 C2 U B2388 -21.930 99.423 172.734 1.00 0.79 C
ATOM 16 O2 U B2388 -21.304 99.983 173.623 1.00 0.79 O
ATOM 17 N3 U B2388 -23.238 99.738 172.439 1.00 0.79 N
ATOM 18 C4 U B2388 -24.013 99.200 171.439 1.00 0.79 C
ATOM 19 O4 U B2388 -25.161 99.622 171.256 1.00 0.79 O
ATOM 20 C5 U B2388 -23.357 98.206 170.663 1.00 0.79 C
ATOM 21 C6 U B2388 -22.088 97.868 170.938 1.00 0.79 C
ATOM 22 P C B2389 -20.306 93.353 173.598 1.00 18.16 P
ATOM 23 OP1 C B2389 -19.403 92.285 174.080 1.00 16.49 O
ATOM 24 OP2 C B2389 -21.341 93.044 172.568 1.00 16.49 O
ATOM 25 O5' C B2389 -21.034 93.994 174.862 1.00 17.61 O
TER
Atoms:
C2: (-25.963,102.357,173.351)
OP1: (-29.757,109.035,174.145)
OP2: (-30.122,107.373,172.212)
C4: (-27.577,102.070,171.716)
O5': (-28.567,106.848,174.131)
C3': (-25.653,106.475,174.604)
C1': (-26.104,104.170,174.972)
O4': (-27.133,104.914,175.585)
C5': (-27.982,107.139,175.415)
P: (-29.868,107.634,173.657)
O2: (-24.923,102.021,173.928)
C4': (-26.752,106.302,175.643)
C2': (-24.964,105.108,174.602)
O2': (-24.004,104.914,175.601)
N1: (-26.654,103.457,173.823)
N3: (-26.440,101.682,172.288)
N4: (-28.019,101.371,170.677)
C6: (-27.817,103.855,173.228)
C5: (-28.312,103.190,172.186)
O3': (-24.782,107.545,175.000)
OP1: (-29.757,109.035,174.145)
OP2: (-30.122,107.373,172.212)
C4: (-27.577,102.070,171.716)
O5': (-28.567,106.848,174.131)
C3': (-25.653,106.475,174.604)
C1': (-26.104,104.170,174.972)
O4': (-27.133,104.914,175.585)
C5': (-27.982,107.139,175.415)
P: (-29.868,107.634,173.657)
O2: (-24.923,102.021,173.928)
C4': (-26.752,106.302,175.643)
C2': (-24.964,105.108,174.602)
O2': (-24.004,104.914,175.601)
N1: (-26.654,103.457,173.823)
N3: (-26.440,101.682,172.288)
N4: (-28.019,101.371,170.677)
C6: (-27.817,103.855,173.228)
C5: (-28.312,103.190,172.186)
O3': (-24.782,107.545,175.000)
C4: (-24.013,99.200,171.439)
N3: (-23.238,99.738,172.439)
OP1: (-20.196,93.470,167.977)
OP2: (-22.478,94.667,168.196)
C2: (-21.930,99.423,172.734)
C1': (-19.995,98.041,172.260)
C3': (-19.888,95.687,172.418)
O5': (-20.548,95.319,169.607)
O4': (-19.394,97.556,171.082)
C5': (-19.162,95.421,169.967)
P: (-20.985,94.707,168.204)
C4': (-19.015,96.170,171.268)
C2': (-19.951,96.927,173.304)
O2': (-18.789,97.089,174.097)
N1: (-21.371,98.443,171.950)
O4: (-25.161,99.622,171.256)
O2: (-21.304,99.983,173.623)
C6: (-22.088,97.868,170.938)
C5: (-23.357,98.206,170.663)
O3': (-19.332,94.534,173.072)
N3: (-23.238,99.738,172.439)
OP1: (-20.196,93.470,167.977)
OP2: (-22.478,94.667,168.196)
C2: (-21.930,99.423,172.734)
C1': (-19.995,98.041,172.260)
C3': (-19.888,95.687,172.418)
O5': (-20.548,95.319,169.607)
O4': (-19.394,97.556,171.082)
C5': (-19.162,95.421,169.967)
P: (-20.985,94.707,168.204)
C4': (-19.015,96.170,171.268)
C2': (-19.951,96.927,173.304)
O2': (-18.789,97.089,174.097)
N1: (-21.371,98.443,171.950)
O4: (-25.161,99.622,171.256)
O2: (-21.304,99.983,173.623)
C6: (-22.088,97.868,170.938)
C5: (-23.357,98.206,170.663)
O3': (-19.332,94.534,173.072)
Image (generated by PyMOL):