Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VQM:0578:0556
Extra
PDB:
ATOM 1 O3' U A 577 -11.840 92.842 106.806 1.00 70.86 O
ATOM 2 P A A 578 -11.468 94.183 106.003 1.00 72.62 P
ATOM 3 OP1 A A 578 -12.669 94.637 105.256 1.00 73.49 O
ATOM 4 OP2 A A 578 -10.194 93.953 105.271 1.00 73.52 O
ATOM 5 O5' A A 578 -11.189 95.239 107.157 1.00 69.42 O
ATOM 6 C5' A A 578 -12.258 95.775 107.933 1.00 66.10 C
ATOM 7 C4' A A 578 -11.725 96.796 108.899 1.00 65.64 C
ATOM 8 O4' A A 578 -10.909 96.137 109.903 1.00 65.88 O
ATOM 9 C3' A A 578 -10.779 97.813 108.297 1.00 65.29 C
ATOM 10 O3' A A 578 -11.451 98.841 107.592 1.00 67.11 O
ATOM 11 C2' A A 578 -10.024 98.302 109.524 1.00 65.78 C
ATOM 12 O2' A A 578 -10.762 99.201 110.327 1.00 67.20 O
ATOM 13 C1' A A 578 -9.838 96.991 110.284 1.00 64.28 C
ATOM 14 N9 A A 578 -8.575 96.329 109.950 1.00 61.39 N
ATOM 15 C8 A A 578 -8.394 95.190 109.205 1.00 60.84 C
ATOM 16 N7 A A 578 -7.142 94.824 109.093 1.00 60.34 N
ATOM 17 C5 A A 578 -6.448 95.792 109.805 1.00 58.87 C
ATOM 18 C6 A A 578 -5.082 95.967 110.070 1.00 58.50 C
ATOM 19 N6 A A 578 -4.131 95.136 109.630 1.00 57.13 N
ATOM 20 N1 A A 578 -4.720 97.036 110.813 1.00 57.60 N
ATOM 21 C2 A A 578 -5.676 97.863 111.253 1.00 56.78 C
ATOM 22 N3 A A 578 -6.990 97.800 111.071 1.00 57.60 N
ATOM 23 C4 A A 578 -7.316 96.728 110.332 1.00 58.16 C
ATOM 24 P A A 579 -10.838 99.381 106.202 1.00 66.35 P
ATOM 25 OP1 A A 579 -11.541 100.667 105.907 1.00 65.09 O
ATOM 26 OP2 A A 579 -10.866 98.271 105.201 1.00 64.89 O
ATOM 27 O5' A A 579 -9.319 99.709 106.561 1.00 64.69 O
TER
ATOM 1 O3' U B 555 4.265 91.985 107.838 1.00 48.91 O
ATOM 2 P G B 556 3.734 91.417 109.252 1.00 48.63 P
ATOM 3 OP1 G B 556 4.728 91.816 110.282 1.00 50.02 O
ATOM 4 OP2 G B 556 3.394 89.987 109.085 1.00 46.03 O
ATOM 5 O5' G B 556 2.405 92.249 109.522 1.00 46.34 O
ATOM 6 C5' G B 556 2.458 93.575 110.069 1.00 48.46 C
ATOM 7 C4' G B 556 1.058 94.092 110.291 1.00 52.55 C
ATOM 8 O4' G B 556 0.376 94.213 109.007 1.00 52.74 O
ATOM 9 C3' G B 556 0.148 93.166 111.085 1.00 53.73 C
ATOM 10 O3' G B 556 0.359 93.236 112.490 1.00 56.19 O
ATOM 11 C2' G B 556 -1.233 93.634 110.654 1.00 52.36 C
ATOM 12 O2' G B 556 -1.597 94.848 111.283 1.00 49.38 O
ATOM 13 C1' G B 556 -1.000 93.875 109.160 1.00 51.28 C
ATOM 14 N9 G B 556 -1.271 92.690 108.350 1.00 48.06 N
ATOM 15 C8 G B 556 -0.370 91.725 107.973 1.00 48.49 C
ATOM 16 N7 G B 556 -0.905 90.775 107.253 1.00 48.66 N
ATOM 17 C5 G B 556 -2.241 91.133 107.150 1.00 47.15 C
ATOM 18 C6 G B 556 -3.311 90.487 106.487 1.00 47.30 C
ATOM 19 O6 G B 556 -3.288 89.431 105.848 1.00 46.79 O
ATOM 20 N1 G B 556 -4.502 91.193 106.622 1.00 44.45 N
ATOM 21 C2 G B 556 -4.644 92.369 107.311 1.00 47.62 C
ATOM 22 N2 G B 556 -5.875 92.899 107.333 1.00 47.78 N
ATOM 23 N3 G B 556 -3.651 92.984 107.937 1.00 49.67 N
ATOM 24 C4 G B 556 -2.485 92.314 107.816 1.00 48.48 C
ATOM 25 P A B 557 -0.108 92.008 113.420 1.00 59.53 P
ATOM 26 OP1 A B 557 0.486 92.236 114.765 1.00 59.61 O
ATOM 27 OP2 A B 557 0.135 90.716 112.721 1.00 54.56 O
ATOM 28 O5' A B 557 -1.681 92.223 113.513 1.00 59.99 O
TER
ATOM 2 P A A 578 -11.468 94.183 106.003 1.00 72.62 P
ATOM 3 OP1 A A 578 -12.669 94.637 105.256 1.00 73.49 O
ATOM 4 OP2 A A 578 -10.194 93.953 105.271 1.00 73.52 O
ATOM 5 O5' A A 578 -11.189 95.239 107.157 1.00 69.42 O
ATOM 6 C5' A A 578 -12.258 95.775 107.933 1.00 66.10 C
ATOM 7 C4' A A 578 -11.725 96.796 108.899 1.00 65.64 C
ATOM 8 O4' A A 578 -10.909 96.137 109.903 1.00 65.88 O
ATOM 9 C3' A A 578 -10.779 97.813 108.297 1.00 65.29 C
ATOM 10 O3' A A 578 -11.451 98.841 107.592 1.00 67.11 O
ATOM 11 C2' A A 578 -10.024 98.302 109.524 1.00 65.78 C
ATOM 12 O2' A A 578 -10.762 99.201 110.327 1.00 67.20 O
ATOM 13 C1' A A 578 -9.838 96.991 110.284 1.00 64.28 C
ATOM 14 N9 A A 578 -8.575 96.329 109.950 1.00 61.39 N
ATOM 15 C8 A A 578 -8.394 95.190 109.205 1.00 60.84 C
ATOM 16 N7 A A 578 -7.142 94.824 109.093 1.00 60.34 N
ATOM 17 C5 A A 578 -6.448 95.792 109.805 1.00 58.87 C
ATOM 18 C6 A A 578 -5.082 95.967 110.070 1.00 58.50 C
ATOM 19 N6 A A 578 -4.131 95.136 109.630 1.00 57.13 N
ATOM 20 N1 A A 578 -4.720 97.036 110.813 1.00 57.60 N
ATOM 21 C2 A A 578 -5.676 97.863 111.253 1.00 56.78 C
ATOM 22 N3 A A 578 -6.990 97.800 111.071 1.00 57.60 N
ATOM 23 C4 A A 578 -7.316 96.728 110.332 1.00 58.16 C
ATOM 24 P A A 579 -10.838 99.381 106.202 1.00 66.35 P
ATOM 25 OP1 A A 579 -11.541 100.667 105.907 1.00 65.09 O
ATOM 26 OP2 A A 579 -10.866 98.271 105.201 1.00 64.89 O
ATOM 27 O5' A A 579 -9.319 99.709 106.561 1.00 64.69 O
TER
ATOM 1 O3' U B 555 4.265 91.985 107.838 1.00 48.91 O
ATOM 2 P G B 556 3.734 91.417 109.252 1.00 48.63 P
ATOM 3 OP1 G B 556 4.728 91.816 110.282 1.00 50.02 O
ATOM 4 OP2 G B 556 3.394 89.987 109.085 1.00 46.03 O
ATOM 5 O5' G B 556 2.405 92.249 109.522 1.00 46.34 O
ATOM 6 C5' G B 556 2.458 93.575 110.069 1.00 48.46 C
ATOM 7 C4' G B 556 1.058 94.092 110.291 1.00 52.55 C
ATOM 8 O4' G B 556 0.376 94.213 109.007 1.00 52.74 O
ATOM 9 C3' G B 556 0.148 93.166 111.085 1.00 53.73 C
ATOM 10 O3' G B 556 0.359 93.236 112.490 1.00 56.19 O
ATOM 11 C2' G B 556 -1.233 93.634 110.654 1.00 52.36 C
ATOM 12 O2' G B 556 -1.597 94.848 111.283 1.00 49.38 O
ATOM 13 C1' G B 556 -1.000 93.875 109.160 1.00 51.28 C
ATOM 14 N9 G B 556 -1.271 92.690 108.350 1.00 48.06 N
ATOM 15 C8 G B 556 -0.370 91.725 107.973 1.00 48.49 C
ATOM 16 N7 G B 556 -0.905 90.775 107.253 1.00 48.66 N
ATOM 17 C5 G B 556 -2.241 91.133 107.150 1.00 47.15 C
ATOM 18 C6 G B 556 -3.311 90.487 106.487 1.00 47.30 C
ATOM 19 O6 G B 556 -3.288 89.431 105.848 1.00 46.79 O
ATOM 20 N1 G B 556 -4.502 91.193 106.622 1.00 44.45 N
ATOM 21 C2 G B 556 -4.644 92.369 107.311 1.00 47.62 C
ATOM 22 N2 G B 556 -5.875 92.899 107.333 1.00 47.78 N
ATOM 23 N3 G B 556 -3.651 92.984 107.937 1.00 49.67 N
ATOM 24 C4 G B 556 -2.485 92.314 107.816 1.00 48.48 C
ATOM 25 P A B 557 -0.108 92.008 113.420 1.00 59.53 P
ATOM 26 OP1 A B 557 0.486 92.236 114.765 1.00 59.61 O
ATOM 27 OP2 A B 557 0.135 90.716 112.721 1.00 54.56 O
ATOM 28 O5' A B 557 -1.681 92.223 113.513 1.00 59.99 O
TER
Atoms:
OP1: (-12.669,94.637,105.256)
OP2: (-10.194,93.953,105.271)
C3': (-10.779,97.813,108.297)
C1': (-9.838,96.991,110.284)
C5': (-12.258,95.775,107.933)
O4': (-10.909,96.137,109.903)
C8: (-8.394,95.190,109.205)
O2': (-10.762,99.201,110.327)
C6: (-5.082,95.967,110.070)
C5: (-6.448,95.792,109.805)
C4: (-7.316,96.728,110.332)
P: (-11.468,94.183,106.003)
C4': (-11.725,96.796,108.899)
C2': (-10.024,98.302,109.524)
C2: (-5.676,97.863,111.253)
N1: (-4.720,97.036,110.813)
N3: (-6.990,97.800,111.071)
N6: (-4.131,95.136,109.630)
N7: (-7.142,94.824,109.093)
N9: (-8.575,96.329,109.950)
O5': (-11.189,95.239,107.157)
O3': (-11.451,98.841,107.592)
OP2: (-10.194,93.953,105.271)
C3': (-10.779,97.813,108.297)
C1': (-9.838,96.991,110.284)
C5': (-12.258,95.775,107.933)
O4': (-10.909,96.137,109.903)
C8: (-8.394,95.190,109.205)
O2': (-10.762,99.201,110.327)
C6: (-5.082,95.967,110.070)
C5: (-6.448,95.792,109.805)
C4: (-7.316,96.728,110.332)
P: (-11.468,94.183,106.003)
C4': (-11.725,96.796,108.899)
C2': (-10.024,98.302,109.524)
C2: (-5.676,97.863,111.253)
N1: (-4.720,97.036,110.813)
N3: (-6.990,97.800,111.071)
N6: (-4.131,95.136,109.630)
N7: (-7.142,94.824,109.093)
N9: (-8.575,96.329,109.950)
O5': (-11.189,95.239,107.157)
O3': (-11.451,98.841,107.592)
OP1: (4.728,91.816,110.282)
OP2: (3.394,89.987,109.085)
C3': (0.148,93.166,111.085)
C1': (-1.000,93.875,109.160)
C5': (2.458,93.575,110.069)
O6: (-3.288,89.431,105.848)
O4': (0.376,94.213,109.007)
C8: (-0.370,91.725,107.973)
C2: (-4.644,92.369,107.311)
C6: (-3.311,90.487,106.487)
C5: (-2.241,91.133,107.150)
C4: (-2.485,92.314,107.816)
P: (3.734,91.417,109.252)
C4': (1.058,94.092,110.291)
C2': (-1.233,93.634,110.654)
O2': (-1.597,94.848,111.283)
N1: (-4.502,91.193,106.622)
N2: (-5.875,92.899,107.333)
N3: (-3.651,92.984,107.937)
N7: (-0.905,90.775,107.253)
N9: (-1.271,92.690,108.350)
O5': (2.405,92.249,109.522)
O3': (0.359,93.236,112.490)
OP2: (3.394,89.987,109.085)
C3': (0.148,93.166,111.085)
C1': (-1.000,93.875,109.160)
C5': (2.458,93.575,110.069)
O6: (-3.288,89.431,105.848)
O4': (0.376,94.213,109.007)
C8: (-0.370,91.725,107.973)
C2: (-4.644,92.369,107.311)
C6: (-3.311,90.487,106.487)
C5: (-2.241,91.133,107.150)
C4: (-2.485,92.314,107.816)
P: (3.734,91.417,109.252)
C4': (1.058,94.092,110.291)
C2': (-1.233,93.634,110.654)
O2': (-1.597,94.848,111.283)
N1: (-4.502,91.193,106.622)
N2: (-5.875,92.899,107.333)
N3: (-3.651,92.984,107.937)
N7: (-0.905,90.775,107.253)
N9: (-1.271,92.690,108.350)
O5': (2.405,92.249,109.522)
O3': (0.359,93.236,112.490)
Image (generated by PyMOL):