Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIT:0348:0280
Extra
PDB:
ATOM 1 O3' U A 347 57.693 117.404 8.397 1.00 77.40 O
ATOM 2 P A A 348 57.770 116.666 6.967 1.00 78.45 P
ATOM 3 OP1 A A 348 58.425 115.349 7.192 1.00 78.86 O
ATOM 4 OP2 A A 348 58.346 117.605 5.975 1.00 78.04 O
ATOM 5 O5' A A 348 56.244 116.414 6.586 1.00 77.98 O
ATOM 6 C5' A A 348 55.424 115.519 7.364 1.00 77.82 C
ATOM 7 C4' A A 348 54.023 115.466 6.801 1.00 77.97 C
ATOM 8 O4' A A 348 53.343 116.726 7.029 1.00 77.32 O
ATOM 9 C3' A A 348 53.943 115.280 5.300 1.00 78.67 C
ATOM 10 O3' A A 348 54.111 113.925 4.934 1.00 81.57 O
ATOM 11 C2' A A 348 52.559 115.818 4.974 1.00 77.27 C
ATOM 12 O2' A A 348 51.532 114.893 5.262 1.00 76.17 O
ATOM 13 C1' A A 348 52.470 116.997 5.942 1.00 76.92 C
ATOM 14 N9 A A 348 52.855 118.279 5.352 1.00 76.44 N
ATOM 15 C8 A A 348 54.045 118.953 5.494 1.00 76.35 C
ATOM 16 N7 A A 348 54.076 120.108 4.877 1.00 76.12 N
ATOM 17 C5 A A 348 52.825 120.202 4.280 1.00 76.33 C
ATOM 18 C6 A A 348 52.224 121.201 3.487 1.00 75.31 C
ATOM 19 N6 A A 348 52.824 122.349 3.159 1.00 73.82 N
ATOM 20 N1 A A 348 50.968 120.976 3.040 1.00 74.99 N
ATOM 21 C2 A A 348 50.364 119.825 3.374 1.00 75.16 C
ATOM 22 N3 A A 348 50.818 118.818 4.120 1.00 75.73 N
ATOM 23 C4 A A 348 52.069 119.072 4.549 1.00 76.59 C
ATOM 24 P C A 349 54.868 113.571 3.569 1.00 83.78 P
ATOM 25 OP1 C A 349 54.961 112.091 3.491 1.00 84.48 O
ATOM 26 OP2 C A 349 56.106 114.389 3.504 1.00 84.99 O
ATOM 27 O5' C A 349 53.866 114.095 2.449 1.00 83.47 O
TER
ATOM 1 O3' C B 279 55.467 128.830 -1.808 1.00 79.42 O
ATOM 2 P G B 280 54.900 129.640 -0.550 1.00 79.44 P
ATOM 3 OP1 G B 280 53.908 130.631 -1.050 1.00 79.34 O
ATOM 4 OP2 G B 280 56.069 130.107 0.239 1.00 80.07 O
ATOM 5 O5' G B 280 54.121 128.532 0.288 1.00 79.25 O
ATOM 6 C5' G B 280 52.942 127.895 -0.244 1.00 77.82 C
ATOM 7 C4' G B 280 52.575 126.689 0.590 1.00 76.80 C
ATOM 8 O4' G B 280 53.639 125.702 0.507 1.00 76.42 O
ATOM 9 C3' G B 280 52.430 126.942 2.080 1.00 75.94 C
ATOM 10 O3' G B 280 51.168 127.498 2.427 1.00 77.31 O
ATOM 11 C2' G B 280 52.663 125.556 2.662 1.00 75.15 C
ATOM 12 O2' G B 280 51.542 124.705 2.536 1.00 73.65 O
ATOM 13 C1' G B 280 53.792 125.054 1.761 1.00 74.45 C
ATOM 14 N9 G B 280 55.110 125.397 2.291 1.00 72.62 N
ATOM 15 C8 G B 280 55.815 126.559 2.080 1.00 71.40 C
ATOM 16 N7 G B 280 56.960 126.584 2.705 1.00 71.56 N
ATOM 17 C5 G B 280 57.019 125.363 3.364 1.00 71.57 C
ATOM 18 C6 G B 280 58.029 124.815 4.204 1.00 71.04 C
ATOM 19 O6 G B 280 59.112 125.311 4.532 1.00 71.15 O
ATOM 20 N1 G B 280 57.677 123.553 4.669 1.00 69.90 N
ATOM 21 C2 G B 280 56.510 122.897 4.361 1.00 70.20 C
ATOM 22 N2 G B 280 56.350 121.686 4.904 1.00 70.06 N
ATOM 23 N3 G B 280 55.568 123.391 3.576 1.00 70.65 N
ATOM 24 C4 G B 280 55.885 124.619 3.118 1.00 71.60 C
ATOM 25 P A B 281 51.011 128.294 3.816 1.00 79.04 P
ATOM 26 OP1 A B 281 49.729 129.051 3.771 1.00 78.16 O
ATOM 27 OP2 A B 281 52.284 129.022 4.074 1.00 79.09 O
ATOM 28 O5' A B 281 50.883 127.130 4.895 1.00 77.40 O
TER
ATOM 2 P A A 348 57.770 116.666 6.967 1.00 78.45 P
ATOM 3 OP1 A A 348 58.425 115.349 7.192 1.00 78.86 O
ATOM 4 OP2 A A 348 58.346 117.605 5.975 1.00 78.04 O
ATOM 5 O5' A A 348 56.244 116.414 6.586 1.00 77.98 O
ATOM 6 C5' A A 348 55.424 115.519 7.364 1.00 77.82 C
ATOM 7 C4' A A 348 54.023 115.466 6.801 1.00 77.97 C
ATOM 8 O4' A A 348 53.343 116.726 7.029 1.00 77.32 O
ATOM 9 C3' A A 348 53.943 115.280 5.300 1.00 78.67 C
ATOM 10 O3' A A 348 54.111 113.925 4.934 1.00 81.57 O
ATOM 11 C2' A A 348 52.559 115.818 4.974 1.00 77.27 C
ATOM 12 O2' A A 348 51.532 114.893 5.262 1.00 76.17 O
ATOM 13 C1' A A 348 52.470 116.997 5.942 1.00 76.92 C
ATOM 14 N9 A A 348 52.855 118.279 5.352 1.00 76.44 N
ATOM 15 C8 A A 348 54.045 118.953 5.494 1.00 76.35 C
ATOM 16 N7 A A 348 54.076 120.108 4.877 1.00 76.12 N
ATOM 17 C5 A A 348 52.825 120.202 4.280 1.00 76.33 C
ATOM 18 C6 A A 348 52.224 121.201 3.487 1.00 75.31 C
ATOM 19 N6 A A 348 52.824 122.349 3.159 1.00 73.82 N
ATOM 20 N1 A A 348 50.968 120.976 3.040 1.00 74.99 N
ATOM 21 C2 A A 348 50.364 119.825 3.374 1.00 75.16 C
ATOM 22 N3 A A 348 50.818 118.818 4.120 1.00 75.73 N
ATOM 23 C4 A A 348 52.069 119.072 4.549 1.00 76.59 C
ATOM 24 P C A 349 54.868 113.571 3.569 1.00 83.78 P
ATOM 25 OP1 C A 349 54.961 112.091 3.491 1.00 84.48 O
ATOM 26 OP2 C A 349 56.106 114.389 3.504 1.00 84.99 O
ATOM 27 O5' C A 349 53.866 114.095 2.449 1.00 83.47 O
TER
ATOM 1 O3' C B 279 55.467 128.830 -1.808 1.00 79.42 O
ATOM 2 P G B 280 54.900 129.640 -0.550 1.00 79.44 P
ATOM 3 OP1 G B 280 53.908 130.631 -1.050 1.00 79.34 O
ATOM 4 OP2 G B 280 56.069 130.107 0.239 1.00 80.07 O
ATOM 5 O5' G B 280 54.121 128.532 0.288 1.00 79.25 O
ATOM 6 C5' G B 280 52.942 127.895 -0.244 1.00 77.82 C
ATOM 7 C4' G B 280 52.575 126.689 0.590 1.00 76.80 C
ATOM 8 O4' G B 280 53.639 125.702 0.507 1.00 76.42 O
ATOM 9 C3' G B 280 52.430 126.942 2.080 1.00 75.94 C
ATOM 10 O3' G B 280 51.168 127.498 2.427 1.00 77.31 O
ATOM 11 C2' G B 280 52.663 125.556 2.662 1.00 75.15 C
ATOM 12 O2' G B 280 51.542 124.705 2.536 1.00 73.65 O
ATOM 13 C1' G B 280 53.792 125.054 1.761 1.00 74.45 C
ATOM 14 N9 G B 280 55.110 125.397 2.291 1.00 72.62 N
ATOM 15 C8 G B 280 55.815 126.559 2.080 1.00 71.40 C
ATOM 16 N7 G B 280 56.960 126.584 2.705 1.00 71.56 N
ATOM 17 C5 G B 280 57.019 125.363 3.364 1.00 71.57 C
ATOM 18 C6 G B 280 58.029 124.815 4.204 1.00 71.04 C
ATOM 19 O6 G B 280 59.112 125.311 4.532 1.00 71.15 O
ATOM 20 N1 G B 280 57.677 123.553 4.669 1.00 69.90 N
ATOM 21 C2 G B 280 56.510 122.897 4.361 1.00 70.20 C
ATOM 22 N2 G B 280 56.350 121.686 4.904 1.00 70.06 N
ATOM 23 N3 G B 280 55.568 123.391 3.576 1.00 70.65 N
ATOM 24 C4 G B 280 55.885 124.619 3.118 1.00 71.60 C
ATOM 25 P A B 281 51.011 128.294 3.816 1.00 79.04 P
ATOM 26 OP1 A B 281 49.729 129.051 3.771 1.00 78.16 O
ATOM 27 OP2 A B 281 52.284 129.022 4.074 1.00 79.09 O
ATOM 28 O5' A B 281 50.883 127.130 4.895 1.00 77.40 O
TER
Atoms:
OP1: (58.425,115.349,7.192)
OP2: (58.346,117.605,5.975)
C3': (53.943,115.280,5.300)
C1': (52.470,116.997,5.942)
C5': (55.424,115.519,7.364)
O4': (53.343,116.726,7.029)
C8: (54.045,118.953,5.494)
O2': (51.532,114.893,5.262)
C6: (52.224,121.201,3.487)
C5: (52.825,120.202,4.280)
C4: (52.069,119.072,4.549)
P: (57.770,116.666,6.967)
C4': (54.023,115.466,6.801)
C2': (52.559,115.818,4.974)
C2: (50.364,119.825,3.374)
N1: (50.968,120.976,3.040)
N3: (50.818,118.818,4.120)
N6: (52.824,122.349,3.159)
N7: (54.076,120.108,4.877)
N9: (52.855,118.279,5.352)
O5': (56.244,116.414,6.586)
O3': (54.111,113.925,4.934)
OP2: (58.346,117.605,5.975)
C3': (53.943,115.280,5.300)
C1': (52.470,116.997,5.942)
C5': (55.424,115.519,7.364)
O4': (53.343,116.726,7.029)
C8: (54.045,118.953,5.494)
O2': (51.532,114.893,5.262)
C6: (52.224,121.201,3.487)
C5: (52.825,120.202,4.280)
C4: (52.069,119.072,4.549)
P: (57.770,116.666,6.967)
C4': (54.023,115.466,6.801)
C2': (52.559,115.818,4.974)
C2: (50.364,119.825,3.374)
N1: (50.968,120.976,3.040)
N3: (50.818,118.818,4.120)
N6: (52.824,122.349,3.159)
N7: (54.076,120.108,4.877)
N9: (52.855,118.279,5.352)
O5': (56.244,116.414,6.586)
O3': (54.111,113.925,4.934)
OP1: (53.908,130.631,-1.050)
OP2: (56.069,130.107,0.239)
C3': (52.430,126.942,2.080)
C1': (53.792,125.054,1.761)
C5': (52.942,127.895,-0.244)
O6: (59.112,125.311,4.532)
O4': (53.639,125.702,0.507)
C8: (55.815,126.559,2.080)
C2: (56.510,122.897,4.361)
C6: (58.029,124.815,4.204)
C5: (57.019,125.363,3.364)
C4: (55.885,124.619,3.118)
P: (54.900,129.640,-0.550)
C4': (52.575,126.689,0.590)
C2': (52.663,125.556,2.662)
O2': (51.542,124.705,2.536)
N1: (57.677,123.553,4.669)
N2: (56.350,121.686,4.904)
N3: (55.568,123.391,3.576)
N7: (56.960,126.584,2.705)
N9: (55.110,125.397,2.291)
O5': (54.121,128.532,0.288)
O3': (51.168,127.498,2.427)
OP2: (56.069,130.107,0.239)
C3': (52.430,126.942,2.080)
C1': (53.792,125.054,1.761)
C5': (52.942,127.895,-0.244)
O6: (59.112,125.311,4.532)
O4': (53.639,125.702,0.507)
C8: (55.815,126.559,2.080)
C2: (56.510,122.897,4.361)
C6: (58.029,124.815,4.204)
C5: (57.019,125.363,3.364)
C4: (55.885,124.619,3.118)
P: (54.900,129.640,-0.550)
C4': (52.575,126.689,0.590)
C2': (52.663,125.556,2.662)
O2': (51.542,124.705,2.536)
N1: (57.677,123.553,4.669)
N2: (56.350,121.686,4.904)
N3: (55.568,123.391,3.576)
N7: (56.960,126.584,2.705)
N9: (55.110,125.397,2.291)
O5': (54.121,128.532,0.288)
O3': (51.168,127.498,2.427)
Image (generated by PyMOL):