Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIT:0230:0257
Extra
PDB:
ATOM 1 O3' A A 229 89.671 111.447 7.050 1.00 48.89 O
ATOM 2 P A A 230 90.127 111.513 5.512 1.00 48.45 P
ATOM 3 OP1 A A 230 91.345 112.366 5.467 1.00 47.69 O
ATOM 4 OP2 A A 230 88.936 111.869 4.686 1.00 46.20 O
ATOM 5 O5' A A 230 90.524 110.012 5.166 1.00 45.99 O
ATOM 6 C5' A A 230 91.581 109.346 5.872 1.00 44.29 C
ATOM 7 C4' A A 230 91.517 107.858 5.618 1.00 44.77 C
ATOM 8 O4' A A 230 90.240 107.349 6.081 1.00 43.52 O
ATOM 9 C3' A A 230 91.538 107.419 4.165 1.00 45.88 C
ATOM 10 O3' A A 230 92.843 107.433 3.603 1.00 49.45 O
ATOM 11 C2' A A 230 90.957 106.016 4.255 1.00 43.87 C
ATOM 12 O2' A A 230 91.892 105.074 4.753 1.00 42.47 O
ATOM 13 C1' A A 230 89.861 106.228 5.296 1.00 42.20 C
ATOM 14 N9 A A 230 88.534 106.478 4.732 1.00 39.55 N
ATOM 15 C8 A A 230 87.950 107.675 4.400 1.00 38.65 C
ATOM 16 N7 A A 230 86.718 107.561 3.961 1.00 36.17 N
ATOM 17 C5 A A 230 86.477 106.197 3.998 1.00 37.02 C
ATOM 18 C6 A A 230 85.347 105.425 3.665 1.00 37.34 C
ATOM 19 N6 A A 230 84.201 105.943 3.222 1.00 36.73 N
ATOM 20 N1 A A 230 85.438 104.084 3.807 1.00 36.98 N
ATOM 21 C2 A A 230 86.593 103.564 4.259 1.00 39.32 C
ATOM 22 N3 A A 230 87.721 104.185 4.610 1.00 38.12 N
ATOM 23 C4 A A 230 87.594 105.515 4.455 1.00 38.59 C
ATOM 24 P A A 231 93.028 107.784 2.043 1.00 51.68 P
ATOM 25 OP1 A A 231 94.476 108.080 1.866 1.00 49.90 O
ATOM 26 OP2 A A 231 92.003 108.795 1.623 1.00 46.92 O
ATOM 27 O5' A A 231 92.669 106.420 1.301 1.00 50.34 O
TER
ATOM 1 O3' U B 256 80.404 108.164 -4.405 1.00 52.39 O
ATOM 2 P G B 257 79.100 107.836 -3.527 1.00 53.90 P
ATOM 3 OP1 G B 257 78.199 106.947 -4.306 1.00 54.13 O
ATOM 4 OP2 G B 257 78.579 109.113 -2.988 1.00 55.67 O
ATOM 5 O5' G B 257 79.668 107.002 -2.303 1.00 54.10 O
ATOM 6 C5' G B 257 80.460 105.824 -2.506 1.00 54.13 C
ATOM 7 C4' G B 257 81.100 105.427 -1.202 1.00 55.60 C
ATOM 8 O4' G B 257 82.103 106.412 -0.835 1.00 54.61 O
ATOM 9 C3' G B 257 80.126 105.417 -0.036 1.00 54.52 C
ATOM 10 O3' G B 257 79.427 104.183 0.026 1.00 56.66 O
ATOM 11 C2' G B 257 81.032 105.677 1.158 1.00 53.14 C
ATOM 12 O2' G B 257 81.718 104.511 1.579 1.00 53.35 O
ATOM 13 C1' G B 257 82.027 106.678 0.557 1.00 50.49 C
ATOM 14 N9 G B 257 81.658 108.084 0.717 1.00 44.12 N
ATOM 15 C8 G B 257 80.575 108.728 0.166 1.00 42.51 C
ATOM 16 N7 G B 257 80.518 109.993 0.480 1.00 41.03 N
ATOM 17 C5 G B 257 81.627 110.197 1.289 1.00 38.91 C
ATOM 18 C6 G B 257 82.086 111.368 1.936 1.00 37.87 C
ATOM 19 O6 G B 257 81.595 112.499 1.918 1.00 37.36 O
ATOM 20 N1 G B 257 83.244 111.127 2.664 1.00 37.24 N
ATOM 21 C2 G B 257 83.880 109.913 2.756 1.00 37.53 C
ATOM 22 N2 G B 257 84.980 109.872 3.519 1.00 36.74 N
ATOM 23 N3 G B 257 83.465 108.817 2.152 1.00 37.95 N
ATOM 24 C4 G B 257 82.340 109.028 1.444 1.00 40.06 C
ATOM 25 P U B 258 77.967 104.131 0.678 1.00 58.78 P
ATOM 26 OP1 U B 258 77.284 102.913 0.174 1.00 59.21 O
ATOM 27 OP2 U B 258 77.328 105.464 0.487 1.00 58.99 O
ATOM 28 O5' U B 258 78.276 103.930 2.225 1.00 59.08 O
TER
ATOM 2 P A A 230 90.127 111.513 5.512 1.00 48.45 P
ATOM 3 OP1 A A 230 91.345 112.366 5.467 1.00 47.69 O
ATOM 4 OP2 A A 230 88.936 111.869 4.686 1.00 46.20 O
ATOM 5 O5' A A 230 90.524 110.012 5.166 1.00 45.99 O
ATOM 6 C5' A A 230 91.581 109.346 5.872 1.00 44.29 C
ATOM 7 C4' A A 230 91.517 107.858 5.618 1.00 44.77 C
ATOM 8 O4' A A 230 90.240 107.349 6.081 1.00 43.52 O
ATOM 9 C3' A A 230 91.538 107.419 4.165 1.00 45.88 C
ATOM 10 O3' A A 230 92.843 107.433 3.603 1.00 49.45 O
ATOM 11 C2' A A 230 90.957 106.016 4.255 1.00 43.87 C
ATOM 12 O2' A A 230 91.892 105.074 4.753 1.00 42.47 O
ATOM 13 C1' A A 230 89.861 106.228 5.296 1.00 42.20 C
ATOM 14 N9 A A 230 88.534 106.478 4.732 1.00 39.55 N
ATOM 15 C8 A A 230 87.950 107.675 4.400 1.00 38.65 C
ATOM 16 N7 A A 230 86.718 107.561 3.961 1.00 36.17 N
ATOM 17 C5 A A 230 86.477 106.197 3.998 1.00 37.02 C
ATOM 18 C6 A A 230 85.347 105.425 3.665 1.00 37.34 C
ATOM 19 N6 A A 230 84.201 105.943 3.222 1.00 36.73 N
ATOM 20 N1 A A 230 85.438 104.084 3.807 1.00 36.98 N
ATOM 21 C2 A A 230 86.593 103.564 4.259 1.00 39.32 C
ATOM 22 N3 A A 230 87.721 104.185 4.610 1.00 38.12 N
ATOM 23 C4 A A 230 87.594 105.515 4.455 1.00 38.59 C
ATOM 24 P A A 231 93.028 107.784 2.043 1.00 51.68 P
ATOM 25 OP1 A A 231 94.476 108.080 1.866 1.00 49.90 O
ATOM 26 OP2 A A 231 92.003 108.795 1.623 1.00 46.92 O
ATOM 27 O5' A A 231 92.669 106.420 1.301 1.00 50.34 O
TER
ATOM 1 O3' U B 256 80.404 108.164 -4.405 1.00 52.39 O
ATOM 2 P G B 257 79.100 107.836 -3.527 1.00 53.90 P
ATOM 3 OP1 G B 257 78.199 106.947 -4.306 1.00 54.13 O
ATOM 4 OP2 G B 257 78.579 109.113 -2.988 1.00 55.67 O
ATOM 5 O5' G B 257 79.668 107.002 -2.303 1.00 54.10 O
ATOM 6 C5' G B 257 80.460 105.824 -2.506 1.00 54.13 C
ATOM 7 C4' G B 257 81.100 105.427 -1.202 1.00 55.60 C
ATOM 8 O4' G B 257 82.103 106.412 -0.835 1.00 54.61 O
ATOM 9 C3' G B 257 80.126 105.417 -0.036 1.00 54.52 C
ATOM 10 O3' G B 257 79.427 104.183 0.026 1.00 56.66 O
ATOM 11 C2' G B 257 81.032 105.677 1.158 1.00 53.14 C
ATOM 12 O2' G B 257 81.718 104.511 1.579 1.00 53.35 O
ATOM 13 C1' G B 257 82.027 106.678 0.557 1.00 50.49 C
ATOM 14 N9 G B 257 81.658 108.084 0.717 1.00 44.12 N
ATOM 15 C8 G B 257 80.575 108.728 0.166 1.00 42.51 C
ATOM 16 N7 G B 257 80.518 109.993 0.480 1.00 41.03 N
ATOM 17 C5 G B 257 81.627 110.197 1.289 1.00 38.91 C
ATOM 18 C6 G B 257 82.086 111.368 1.936 1.00 37.87 C
ATOM 19 O6 G B 257 81.595 112.499 1.918 1.00 37.36 O
ATOM 20 N1 G B 257 83.244 111.127 2.664 1.00 37.24 N
ATOM 21 C2 G B 257 83.880 109.913 2.756 1.00 37.53 C
ATOM 22 N2 G B 257 84.980 109.872 3.519 1.00 36.74 N
ATOM 23 N3 G B 257 83.465 108.817 2.152 1.00 37.95 N
ATOM 24 C4 G B 257 82.340 109.028 1.444 1.00 40.06 C
ATOM 25 P U B 258 77.967 104.131 0.678 1.00 58.78 P
ATOM 26 OP1 U B 258 77.284 102.913 0.174 1.00 59.21 O
ATOM 27 OP2 U B 258 77.328 105.464 0.487 1.00 58.99 O
ATOM 28 O5' U B 258 78.276 103.930 2.225 1.00 59.08 O
TER
Atoms:
OP1: (91.345,112.366,5.467)
OP2: (88.936,111.869,4.686)
C3': (91.538,107.419,4.165)
C1': (89.861,106.228,5.296)
C5': (91.581,109.346,5.872)
O4': (90.240,107.349,6.081)
C8: (87.950,107.675,4.400)
O2': (91.892,105.074,4.753)
C6: (85.347,105.425,3.665)
C5: (86.477,106.197,3.998)
C4: (87.594,105.515,4.455)
P: (90.127,111.513,5.512)
C4': (91.517,107.858,5.618)
C2': (90.957,106.016,4.255)
C2: (86.593,103.564,4.259)
N1: (85.438,104.084,3.807)
N3: (87.721,104.185,4.610)
N6: (84.201,105.943,3.222)
N7: (86.718,107.561,3.961)
N9: (88.534,106.478,4.732)
O5': (90.524,110.012,5.166)
O3': (92.843,107.433,3.603)
OP2: (88.936,111.869,4.686)
C3': (91.538,107.419,4.165)
C1': (89.861,106.228,5.296)
C5': (91.581,109.346,5.872)
O4': (90.240,107.349,6.081)
C8: (87.950,107.675,4.400)
O2': (91.892,105.074,4.753)
C6: (85.347,105.425,3.665)
C5: (86.477,106.197,3.998)
C4: (87.594,105.515,4.455)
P: (90.127,111.513,5.512)
C4': (91.517,107.858,5.618)
C2': (90.957,106.016,4.255)
C2: (86.593,103.564,4.259)
N1: (85.438,104.084,3.807)
N3: (87.721,104.185,4.610)
N6: (84.201,105.943,3.222)
N7: (86.718,107.561,3.961)
N9: (88.534,106.478,4.732)
O5': (90.524,110.012,5.166)
O3': (92.843,107.433,3.603)
OP1: (78.199,106.947,-4.306)
OP2: (78.579,109.113,-2.988)
C3': (80.126,105.417,-0.036)
C1': (82.027,106.678,0.557)
C5': (80.460,105.824,-2.506)
O6: (81.595,112.499,1.918)
O4': (82.103,106.412,-0.835)
C8: (80.575,108.728,0.166)
C2: (83.880,109.913,2.756)
C6: (82.086,111.368,1.936)
C5: (81.627,110.197,1.289)
C4: (82.340,109.028,1.444)
P: (79.100,107.836,-3.527)
C4': (81.100,105.427,-1.202)
C2': (81.032,105.677,1.158)
O2': (81.718,104.511,1.579)
N1: (83.244,111.127,2.664)
N2: (84.980,109.872,3.519)
N3: (83.465,108.817,2.152)
N7: (80.518,109.993,0.480)
N9: (81.658,108.084,0.717)
O5': (79.668,107.002,-2.303)
O3': (79.427,104.183,0.026)
OP2: (78.579,109.113,-2.988)
C3': (80.126,105.417,-0.036)
C1': (82.027,106.678,0.557)
C5': (80.460,105.824,-2.506)
O6: (81.595,112.499,1.918)
O4': (82.103,106.412,-0.835)
C8: (80.575,108.728,0.166)
C2: (83.880,109.913,2.756)
C6: (82.086,111.368,1.936)
C5: (81.627,110.197,1.289)
C4: (82.340,109.028,1.444)
P: (79.100,107.836,-3.527)
C4': (81.100,105.427,-1.202)
C2': (81.032,105.677,1.158)
O2': (81.718,104.511,1.579)
N1: (83.244,111.127,2.664)
N2: (84.980,109.872,3.519)
N3: (83.465,108.817,2.152)
N7: (80.518,109.993,0.480)
N9: (81.658,108.084,0.717)
O5': (79.668,107.002,-2.303)
O3': (79.427,104.183,0.026)
Image (generated by PyMOL):