Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2YIE:X39:X41
Extra
PDB:
ATOM 1 O3' U A 38 17.328 -50.585 -82.840 1.00 57.45 O
ATOM 2 P A A 39 16.607 -51.785 -82.069 1.00 58.17 P
ATOM 3 OP1 A A 39 16.387 -52.874 -83.059 1.00 61.38 O
ATOM 4 OP2 A A 39 15.432 -51.210 -81.359 1.00 63.99 O
ATOM 5 O5' A A 39 17.712 -52.223 -81.017 1.00 57.35 O
ATOM 6 C5' A A 39 18.913 -52.855 -81.443 1.00 55.93 C
ATOM 7 C4' A A 39 19.445 -53.774 -80.384 1.00 58.72 C
ATOM 8 O4' A A 39 19.984 -52.969 -79.301 1.00 64.70 O
ATOM 9 C3' A A 39 18.397 -54.691 -79.755 1.00 60.83 C
ATOM 10 O3' A A 39 18.995 -55.938 -79.410 1.00 63.01 O
ATOM 11 C2' A A 39 18.009 -53.940 -78.486 1.00 65.43 C
ATOM 12 O2' A A 39 17.496 -54.755 -77.456 1.00 68.42 O
ATOM 13 C1' A A 39 19.335 -53.301 -78.091 1.00 68.43 C
ATOM 14 N9 A A 39 19.188 -52.082 -77.293 1.00 75.14 N
ATOM 15 C8 A A 39 18.215 -51.120 -77.397 1.00 72.85 C
ATOM 16 N7 A A 39 18.339 -50.157 -76.519 1.00 77.55 N
ATOM 17 C5 A A 39 19.465 -50.514 -75.788 1.00 83.20 C
ATOM 18 C6 A A 39 20.128 -49.906 -74.711 1.00 92.74 C
ATOM 19 N6 A A 39 19.733 -48.757 -74.161 1.00 97.77 N
ATOM 20 N1 A A 39 21.222 -50.523 -74.213 1.00 99.77 N
ATOM 21 C2 A A 39 21.615 -51.677 -74.765 1.00 96.13 C
ATOM 22 N3 A A 39 21.078 -52.347 -75.780 1.00 86.61 N
ATOM 23 C4 A A 39 19.994 -51.703 -76.249 1.00 81.78 C
ATOM 24 P G A 40 19.234 -57.063 -80.535 1.00 65.79 P
ATOM 25 OP1 G A 40 20.691 -57.065 -80.842 1.00 66.61 O
ATOM 26 OP2 G A 40 18.269 -56.804 -81.632 1.00 61.67 O
ATOM 27 O5' G A 40 18.836 -58.405 -79.783 1.00 65.72 O
TER
ATOM 1 O3' G B 40 18.350 -58.071 -75.914 1.00 78.22 O
ATOM 2 P U B 41 19.165 -56.737 -75.549 1.00 67.28 P
ATOM 3 OP1 U B 41 18.209 -55.807 -74.906 1.00 67.86 O
ATOM 4 OP2 U B 41 19.871 -56.298 -76.780 1.00 61.92 O
ATOM 5 O5' U B 41 20.221 -57.252 -74.475 1.00 71.94 O
ATOM 6 C5' U B 41 19.799 -58.006 -73.346 1.00 68.96 C
ATOM 7 C4' U B 41 20.948 -58.316 -72.426 1.00 72.45 C
ATOM 8 O4' U B 41 21.838 -59.259 -73.081 1.00 66.54 O
ATOM 9 C3' U B 41 21.798 -57.113 -72.029 1.00 82.52 C
ATOM 10 O3' U B 41 22.218 -57.246 -70.674 1.00 88.03 O
ATOM 11 C2' U B 41 23.001 -57.210 -72.954 1.00 82.50 C
ATOM 12 O2' U B 41 24.181 -56.636 -72.433 1.00 86.41 O
ATOM 13 C1' U B 41 23.143 -58.723 -73.162 1.00 71.85 C
ATOM 14 N1 U B 41 23.699 -59.077 -74.486 1.00 67.81 N
ATOM 15 C2 U B 41 24.851 -59.829 -74.591 1.00 65.59 C
ATOM 16 O2 U B 41 25.443 -60.270 -73.622 1.00 64.61 O
ATOM 17 N3 U B 41 25.289 -60.058 -75.876 1.00 63.58 N
ATOM 18 C4 U B 41 24.708 -59.613 -77.046 1.00 62.33 C
ATOM 19 O4 U B 41 25.209 -59.894 -78.135 1.00 60.33 O
ATOM 20 C5 U B 41 23.527 -58.837 -76.853 1.00 64.07 C
ATOM 21 C6 U B 41 23.084 -58.598 -75.616 1.00 67.03 C
ATOM 22 P C B 42 21.276 -56.700 -69.492 1.00 85.17 P
ATOM 23 OP1 C B 42 20.093 -56.068 -70.135 1.00 84.07 O
ATOM 24 OP2 C B 42 21.053 -57.833 -68.545 1.00 74.76 O
ATOM 25 O5' C B 42 22.181 -55.583 -68.806 1.00 89.62 O
TER
ATOM 2 P A A 39 16.607 -51.785 -82.069 1.00 58.17 P
ATOM 3 OP1 A A 39 16.387 -52.874 -83.059 1.00 61.38 O
ATOM 4 OP2 A A 39 15.432 -51.210 -81.359 1.00 63.99 O
ATOM 5 O5' A A 39 17.712 -52.223 -81.017 1.00 57.35 O
ATOM 6 C5' A A 39 18.913 -52.855 -81.443 1.00 55.93 C
ATOM 7 C4' A A 39 19.445 -53.774 -80.384 1.00 58.72 C
ATOM 8 O4' A A 39 19.984 -52.969 -79.301 1.00 64.70 O
ATOM 9 C3' A A 39 18.397 -54.691 -79.755 1.00 60.83 C
ATOM 10 O3' A A 39 18.995 -55.938 -79.410 1.00 63.01 O
ATOM 11 C2' A A 39 18.009 -53.940 -78.486 1.00 65.43 C
ATOM 12 O2' A A 39 17.496 -54.755 -77.456 1.00 68.42 O
ATOM 13 C1' A A 39 19.335 -53.301 -78.091 1.00 68.43 C
ATOM 14 N9 A A 39 19.188 -52.082 -77.293 1.00 75.14 N
ATOM 15 C8 A A 39 18.215 -51.120 -77.397 1.00 72.85 C
ATOM 16 N7 A A 39 18.339 -50.157 -76.519 1.00 77.55 N
ATOM 17 C5 A A 39 19.465 -50.514 -75.788 1.00 83.20 C
ATOM 18 C6 A A 39 20.128 -49.906 -74.711 1.00 92.74 C
ATOM 19 N6 A A 39 19.733 -48.757 -74.161 1.00 97.77 N
ATOM 20 N1 A A 39 21.222 -50.523 -74.213 1.00 99.77 N
ATOM 21 C2 A A 39 21.615 -51.677 -74.765 1.00 96.13 C
ATOM 22 N3 A A 39 21.078 -52.347 -75.780 1.00 86.61 N
ATOM 23 C4 A A 39 19.994 -51.703 -76.249 1.00 81.78 C
ATOM 24 P G A 40 19.234 -57.063 -80.535 1.00 65.79 P
ATOM 25 OP1 G A 40 20.691 -57.065 -80.842 1.00 66.61 O
ATOM 26 OP2 G A 40 18.269 -56.804 -81.632 1.00 61.67 O
ATOM 27 O5' G A 40 18.836 -58.405 -79.783 1.00 65.72 O
TER
ATOM 1 O3' G B 40 18.350 -58.071 -75.914 1.00 78.22 O
ATOM 2 P U B 41 19.165 -56.737 -75.549 1.00 67.28 P
ATOM 3 OP1 U B 41 18.209 -55.807 -74.906 1.00 67.86 O
ATOM 4 OP2 U B 41 19.871 -56.298 -76.780 1.00 61.92 O
ATOM 5 O5' U B 41 20.221 -57.252 -74.475 1.00 71.94 O
ATOM 6 C5' U B 41 19.799 -58.006 -73.346 1.00 68.96 C
ATOM 7 C4' U B 41 20.948 -58.316 -72.426 1.00 72.45 C
ATOM 8 O4' U B 41 21.838 -59.259 -73.081 1.00 66.54 O
ATOM 9 C3' U B 41 21.798 -57.113 -72.029 1.00 82.52 C
ATOM 10 O3' U B 41 22.218 -57.246 -70.674 1.00 88.03 O
ATOM 11 C2' U B 41 23.001 -57.210 -72.954 1.00 82.50 C
ATOM 12 O2' U B 41 24.181 -56.636 -72.433 1.00 86.41 O
ATOM 13 C1' U B 41 23.143 -58.723 -73.162 1.00 71.85 C
ATOM 14 N1 U B 41 23.699 -59.077 -74.486 1.00 67.81 N
ATOM 15 C2 U B 41 24.851 -59.829 -74.591 1.00 65.59 C
ATOM 16 O2 U B 41 25.443 -60.270 -73.622 1.00 64.61 O
ATOM 17 N3 U B 41 25.289 -60.058 -75.876 1.00 63.58 N
ATOM 18 C4 U B 41 24.708 -59.613 -77.046 1.00 62.33 C
ATOM 19 O4 U B 41 25.209 -59.894 -78.135 1.00 60.33 O
ATOM 20 C5 U B 41 23.527 -58.837 -76.853 1.00 64.07 C
ATOM 21 C6 U B 41 23.084 -58.598 -75.616 1.00 67.03 C
ATOM 22 P C B 42 21.276 -56.700 -69.492 1.00 85.17 P
ATOM 23 OP1 C B 42 20.093 -56.068 -70.135 1.00 84.07 O
ATOM 24 OP2 C B 42 21.053 -57.833 -68.545 1.00 74.76 O
ATOM 25 O5' C B 42 22.181 -55.583 -68.806 1.00 89.62 O
TER
Atoms:
OP1: (16.387,-52.874,-83.059)
OP2: (15.432,-51.210,-81.359)
C3': (18.397,-54.691,-79.755)
C1': (19.335,-53.301,-78.091)
C5': (18.913,-52.855,-81.443)
O4': (19.984,-52.969,-79.301)
C8: (18.215,-51.120,-77.397)
O2': (17.496,-54.755,-77.456)
C6: (20.128,-49.906,-74.711)
C5: (19.465,-50.514,-75.788)
C4: (19.994,-51.703,-76.249)
P: (16.607,-51.785,-82.069)
C4': (19.445,-53.774,-80.384)
C2': (18.009,-53.940,-78.486)
C2: (21.615,-51.677,-74.765)
N1: (21.222,-50.523,-74.213)
N3: (21.078,-52.347,-75.780)
N6: (19.733,-48.757,-74.161)
N7: (18.339,-50.157,-76.519)
N9: (19.188,-52.082,-77.293)
O5': (17.712,-52.223,-81.017)
O3': (18.995,-55.938,-79.410)
OP2: (15.432,-51.210,-81.359)
C3': (18.397,-54.691,-79.755)
C1': (19.335,-53.301,-78.091)
C5': (18.913,-52.855,-81.443)
O4': (19.984,-52.969,-79.301)
C8: (18.215,-51.120,-77.397)
O2': (17.496,-54.755,-77.456)
C6: (20.128,-49.906,-74.711)
C5: (19.465,-50.514,-75.788)
C4: (19.994,-51.703,-76.249)
P: (16.607,-51.785,-82.069)
C4': (19.445,-53.774,-80.384)
C2': (18.009,-53.940,-78.486)
C2: (21.615,-51.677,-74.765)
N1: (21.222,-50.523,-74.213)
N3: (21.078,-52.347,-75.780)
N6: (19.733,-48.757,-74.161)
N7: (18.339,-50.157,-76.519)
N9: (19.188,-52.082,-77.293)
O5': (17.712,-52.223,-81.017)
O3': (18.995,-55.938,-79.410)
C4: (24.708,-59.613,-77.046)
N3: (25.289,-60.058,-75.876)
OP1: (18.209,-55.807,-74.906)
OP2: (19.871,-56.298,-76.780)
C2: (24.851,-59.829,-74.591)
C1': (23.143,-58.723,-73.162)
C3': (21.798,-57.113,-72.029)
O5': (20.221,-57.252,-74.475)
O4': (21.838,-59.259,-73.081)
C5': (19.799,-58.006,-73.346)
P: (19.165,-56.737,-75.549)
C4': (20.948,-58.316,-72.426)
C2': (23.001,-57.210,-72.954)
O2': (24.181,-56.636,-72.433)
N1: (23.699,-59.077,-74.486)
O4: (25.209,-59.894,-78.135)
O2: (25.443,-60.270,-73.622)
C6: (23.084,-58.598,-75.616)
C5: (23.527,-58.837,-76.853)
O3': (22.218,-57.246,-70.674)
N3: (25.289,-60.058,-75.876)
OP1: (18.209,-55.807,-74.906)
OP2: (19.871,-56.298,-76.780)
C2: (24.851,-59.829,-74.591)
C1': (23.143,-58.723,-73.162)
C3': (21.798,-57.113,-72.029)
O5': (20.221,-57.252,-74.475)
O4': (21.838,-59.259,-73.081)
C5': (19.799,-58.006,-73.346)
P: (19.165,-56.737,-75.549)
C4': (20.948,-58.316,-72.426)
C2': (23.001,-57.210,-72.954)
O2': (24.181,-56.636,-72.433)
N1: (23.699,-59.077,-74.486)
O4: (25.209,-59.894,-78.135)
O2: (25.443,-60.270,-73.622)
C6: (23.084,-58.598,-75.616)
C5: (23.527,-58.837,-76.853)
O3': (22.218,-57.246,-70.674)
Image (generated by PyMOL):