Doublet info:
Details
Nucleotide types:
GC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:1492:1488
Extra
PDB:
ATOM 1 O3' G A 491 48.953 15.057 -44.075 1.00289.71 O
ATOM 2 P G A 492 49.667 16.293 -43.307 1.00233.52 P
ATOM 3 OP1 G A 492 49.155 17.557 -43.892 1.00234.09 O
ATOM 4 OP2 G A 492 51.129 16.033 -43.354 1.00233.44 O
ATOM 5 O5' G A 492 49.147 16.156 -41.788 1.00232.51 O
ATOM 6 C5' G A 492 48.506 14.975 -41.287 1.00232.09 C
ATOM 7 C4' G A 492 47.265 15.329 -40.480 1.00231.67 C
ATOM 8 O4' G A 492 46.321 16.009 -41.349 1.00232.39 O
ATOM 9 C3' G A 492 46.458 14.165 -39.885 1.00231.21 C
ATOM 10 O3' G A 492 46.926 13.735 -38.613 1.00230.30 O
ATOM 11 C2' G A 492 45.041 14.723 -39.835 1.00231.34 C
ATOM 12 O2' G A 492 44.865 15.567 -38.704 1.00230.71 O
ATOM 13 C1' G A 492 45.005 15.581 -41.081 1.00232.26 C
ATOM 14 N9 G A 492 44.508 14.826 -42.243 1.00232.99 N
ATOM 15 C8 G A 492 45.072 13.854 -43.038 1.00233.38 C
ATOM 16 N7 G A 492 44.265 13.436 -43.980 1.00234.04 N
ATOM 17 C5 G A 492 43.096 14.146 -43.754 1.00234.06 C
ATOM 18 C6 G A 492 41.848 14.136 -44.413 1.00234.62 C
ATOM 19 O6 G A 492 41.489 13.459 -45.387 1.00235.26 O
ATOM 20 N1 G A 492 40.982 15.037 -43.795 1.00234.38 N
ATOM 21 C2 G A 492 41.260 15.839 -42.708 1.00233.70 C
ATOM 22 N2 G A 492 40.297 16.648 -42.257 1.00233.59 N
ATOM 23 N3 G A 492 42.409 15.858 -42.101 1.00233.19 N
ATOM 24 C4 G A 492 43.246 14.992 -42.681 1.00233.41 C
ATOM 25 P U A 493 46.185 12.522 -37.835 1.00207.63 P
ATOM 26 OP1 U A 493 46.965 12.259 -36.601 1.00206.77 O
ATOM 27 OP2 U A 493 46.014 11.420 -38.813 1.00208.18 O
ATOM 28 O5' U A 493 44.753 13.131 -37.450 1.00207.55 O
TER
ATOM 1 O3' C B 487 32.766 17.944 -45.477 1.00236.59 O
ATOM 2 P C B 488 33.553 19.332 -45.245 1.00269.52 P
ATOM 3 OP1 C B 488 32.529 20.400 -45.148 1.00269.74 O
ATOM 4 OP2 C B 488 34.585 19.438 -46.304 1.00270.14 O
ATOM 5 O5' C B 488 34.242 19.117 -43.828 1.00268.42 O
ATOM 6 C5' C B 488 35.053 20.122 -43.256 1.00268.06 C
ATOM 7 C4' C B 488 36.434 19.605 -42.964 1.00267.62 C
ATOM 8 O4' C B 488 36.491 18.169 -43.206 1.00267.58 O
ATOM 9 C3' C B 488 37.538 20.119 -43.857 1.00268.18 C
ATOM 10 O3' C B 488 37.899 21.459 -43.637 1.00268.18 O
ATOM 11 C2' C B 488 38.629 19.104 -43.596 1.00267.73 C
ATOM 12 O2' C B 488 39.133 19.237 -42.272 1.00266.80 O
ATOM 13 C1' C B 488 37.793 17.828 -43.668 1.00267.70 C
ATOM 14 N1 C B 488 37.707 17.321 -45.074 1.00268.61 N
ATOM 15 C2 C B 488 38.539 16.266 -45.434 1.00268.64 C
ATOM 16 O2 C B 488 39.232 15.768 -44.555 1.00267.90 O
ATOM 17 N3 C B 488 38.550 15.783 -46.699 1.00269.47 N
ATOM 18 C4 C B 488 37.779 16.326 -47.633 1.00270.28 C
ATOM 19 N4 C B 488 37.823 15.810 -48.861 1.00271.09 N
ATOM 20 C5 C B 488 36.934 17.427 -47.328 1.00270.30 C
ATOM 21 C6 C B 488 36.946 17.880 -46.066 1.00269.47 C
ATOM 22 P U B 489 37.951 22.455 -44.899 1.00246.17 P
ATOM 23 OP1 U B 489 37.464 23.776 -44.433 1.00246.13 O
ATOM 24 OP2 U B 489 37.232 21.782 -46.014 1.00246.93 O
ATOM 25 O5' U B 489 39.509 22.526 -45.228 1.00246.24 O
TER
ATOM 2 P G A 492 49.667 16.293 -43.307 1.00233.52 P
ATOM 3 OP1 G A 492 49.155 17.557 -43.892 1.00234.09 O
ATOM 4 OP2 G A 492 51.129 16.033 -43.354 1.00233.44 O
ATOM 5 O5' G A 492 49.147 16.156 -41.788 1.00232.51 O
ATOM 6 C5' G A 492 48.506 14.975 -41.287 1.00232.09 C
ATOM 7 C4' G A 492 47.265 15.329 -40.480 1.00231.67 C
ATOM 8 O4' G A 492 46.321 16.009 -41.349 1.00232.39 O
ATOM 9 C3' G A 492 46.458 14.165 -39.885 1.00231.21 C
ATOM 10 O3' G A 492 46.926 13.735 -38.613 1.00230.30 O
ATOM 11 C2' G A 492 45.041 14.723 -39.835 1.00231.34 C
ATOM 12 O2' G A 492 44.865 15.567 -38.704 1.00230.71 O
ATOM 13 C1' G A 492 45.005 15.581 -41.081 1.00232.26 C
ATOM 14 N9 G A 492 44.508 14.826 -42.243 1.00232.99 N
ATOM 15 C8 G A 492 45.072 13.854 -43.038 1.00233.38 C
ATOM 16 N7 G A 492 44.265 13.436 -43.980 1.00234.04 N
ATOM 17 C5 G A 492 43.096 14.146 -43.754 1.00234.06 C
ATOM 18 C6 G A 492 41.848 14.136 -44.413 1.00234.62 C
ATOM 19 O6 G A 492 41.489 13.459 -45.387 1.00235.26 O
ATOM 20 N1 G A 492 40.982 15.037 -43.795 1.00234.38 N
ATOM 21 C2 G A 492 41.260 15.839 -42.708 1.00233.70 C
ATOM 22 N2 G A 492 40.297 16.648 -42.257 1.00233.59 N
ATOM 23 N3 G A 492 42.409 15.858 -42.101 1.00233.19 N
ATOM 24 C4 G A 492 43.246 14.992 -42.681 1.00233.41 C
ATOM 25 P U A 493 46.185 12.522 -37.835 1.00207.63 P
ATOM 26 OP1 U A 493 46.965 12.259 -36.601 1.00206.77 O
ATOM 27 OP2 U A 493 46.014 11.420 -38.813 1.00208.18 O
ATOM 28 O5' U A 493 44.753 13.131 -37.450 1.00207.55 O
TER
ATOM 1 O3' C B 487 32.766 17.944 -45.477 1.00236.59 O
ATOM 2 P C B 488 33.553 19.332 -45.245 1.00269.52 P
ATOM 3 OP1 C B 488 32.529 20.400 -45.148 1.00269.74 O
ATOM 4 OP2 C B 488 34.585 19.438 -46.304 1.00270.14 O
ATOM 5 O5' C B 488 34.242 19.117 -43.828 1.00268.42 O
ATOM 6 C5' C B 488 35.053 20.122 -43.256 1.00268.06 C
ATOM 7 C4' C B 488 36.434 19.605 -42.964 1.00267.62 C
ATOM 8 O4' C B 488 36.491 18.169 -43.206 1.00267.58 O
ATOM 9 C3' C B 488 37.538 20.119 -43.857 1.00268.18 C
ATOM 10 O3' C B 488 37.899 21.459 -43.637 1.00268.18 O
ATOM 11 C2' C B 488 38.629 19.104 -43.596 1.00267.73 C
ATOM 12 O2' C B 488 39.133 19.237 -42.272 1.00266.80 O
ATOM 13 C1' C B 488 37.793 17.828 -43.668 1.00267.70 C
ATOM 14 N1 C B 488 37.707 17.321 -45.074 1.00268.61 N
ATOM 15 C2 C B 488 38.539 16.266 -45.434 1.00268.64 C
ATOM 16 O2 C B 488 39.232 15.768 -44.555 1.00267.90 O
ATOM 17 N3 C B 488 38.550 15.783 -46.699 1.00269.47 N
ATOM 18 C4 C B 488 37.779 16.326 -47.633 1.00270.28 C
ATOM 19 N4 C B 488 37.823 15.810 -48.861 1.00271.09 N
ATOM 20 C5 C B 488 36.934 17.427 -47.328 1.00270.30 C
ATOM 21 C6 C B 488 36.946 17.880 -46.066 1.00269.47 C
ATOM 22 P U B 489 37.951 22.455 -44.899 1.00246.17 P
ATOM 23 OP1 U B 489 37.464 23.776 -44.433 1.00246.13 O
ATOM 24 OP2 U B 489 37.232 21.782 -46.014 1.00246.93 O
ATOM 25 O5' U B 489 39.509 22.526 -45.228 1.00246.24 O
TER
Atoms:
OP1: (49.155,17.557,-43.892)
OP2: (51.129,16.033,-43.354)
C3': (46.458,14.165,-39.885)
C1': (45.005,15.581,-41.081)
C5': (48.506,14.975,-41.287)
O6: (41.489,13.459,-45.387)
O4': (46.321,16.009,-41.349)
C8: (45.072,13.854,-43.038)
C2: (41.260,15.839,-42.708)
C6: (41.848,14.136,-44.413)
C5: (43.096,14.146,-43.754)
C4: (43.246,14.992,-42.681)
P: (49.667,16.293,-43.307)
C4': (47.265,15.329,-40.480)
C2': (45.041,14.723,-39.835)
O2': (44.865,15.567,-38.704)
N1: (40.982,15.037,-43.795)
N2: (40.297,16.648,-42.257)
N3: (42.409,15.858,-42.101)
N7: (44.265,13.436,-43.980)
N9: (44.508,14.826,-42.243)
O5': (49.147,16.156,-41.788)
O3': (46.926,13.735,-38.613)
OP2: (51.129,16.033,-43.354)
C3': (46.458,14.165,-39.885)
C1': (45.005,15.581,-41.081)
C5': (48.506,14.975,-41.287)
O6: (41.489,13.459,-45.387)
O4': (46.321,16.009,-41.349)
C8: (45.072,13.854,-43.038)
C2: (41.260,15.839,-42.708)
C6: (41.848,14.136,-44.413)
C5: (43.096,14.146,-43.754)
C4: (43.246,14.992,-42.681)
P: (49.667,16.293,-43.307)
C4': (47.265,15.329,-40.480)
C2': (45.041,14.723,-39.835)
O2': (44.865,15.567,-38.704)
N1: (40.982,15.037,-43.795)
N2: (40.297,16.648,-42.257)
N3: (42.409,15.858,-42.101)
N7: (44.265,13.436,-43.980)
N9: (44.508,14.826,-42.243)
O5': (49.147,16.156,-41.788)
O3': (46.926,13.735,-38.613)
C2: (38.539,16.266,-45.434)
OP1: (32.529,20.400,-45.148)
OP2: (34.585,19.438,-46.304)
C4: (37.779,16.326,-47.633)
O5': (34.242,19.117,-43.828)
C3': (37.538,20.119,-43.857)
C1': (37.793,17.828,-43.668)
O4': (36.491,18.169,-43.206)
C5': (35.053,20.122,-43.256)
P: (33.553,19.332,-45.245)
O2: (39.232,15.768,-44.555)
C4': (36.434,19.605,-42.964)
C2': (38.629,19.104,-43.596)
O2': (39.133,19.237,-42.272)
N1: (37.707,17.321,-45.074)
N3: (38.550,15.783,-46.699)
N4: (37.823,15.810,-48.861)
C6: (36.946,17.880,-46.066)
C5: (36.934,17.427,-47.328)
O3': (37.899,21.459,-43.637)
OP1: (32.529,20.400,-45.148)
OP2: (34.585,19.438,-46.304)
C4: (37.779,16.326,-47.633)
O5': (34.242,19.117,-43.828)
C3': (37.538,20.119,-43.857)
C1': (37.793,17.828,-43.668)
O4': (36.491,18.169,-43.206)
C5': (35.053,20.122,-43.256)
P: (33.553,19.332,-45.245)
O2: (39.232,15.768,-44.555)
C4': (36.434,19.605,-42.964)
C2': (38.629,19.104,-43.596)
O2': (39.133,19.237,-42.272)
N1: (37.707,17.321,-45.074)
N3: (38.550,15.783,-46.699)
N4: (37.823,15.810,-48.861)
C6: (36.946,17.880,-46.066)
C5: (36.934,17.427,-47.328)
O3': (37.899,21.459,-43.637)
Image (generated by PyMOL):