Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12858:12880
Extra
PDB:
ATOM 1 O3' U A2857 23.680 22.579 14.531 1.00 48.12 O
ATOM 2 P A A2858 22.907 22.011 13.256 1.00 49.24 P
ATOM 3 OP1 A A2858 23.357 20.627 13.041 1.00 49.01 O
ATOM 4 OP2 A A2858 23.075 22.997 12.158 1.00 49.77 O
ATOM 5 O5' A A2858 21.402 22.012 13.746 1.00 49.29 O
ATOM 6 C5' A A2858 20.886 20.956 14.536 1.00 48.92 C
ATOM 7 C4' A A2858 19.522 21.297 15.062 1.00 49.01 C
ATOM 8 O4' A A2858 19.564 22.608 15.681 1.00 49.05 O
ATOM 9 C3' A A2858 18.421 21.415 14.024 1.00 49.55 C
ATOM 10 O3' A A2858 17.865 20.164 13.673 1.00 49.54 O
ATOM 11 C2' A A2858 17.428 22.318 14.724 1.00 49.64 C
ATOM 12 O2' A A2858 16.704 21.583 15.686 1.00 49.31 O
ATOM 13 C1' A A2858 18.345 23.282 15.459 1.00 49.44 C
ATOM 14 N9 A A2858 18.587 24.499 14.660 1.00 49.90 N
ATOM 15 C8 A A2858 19.679 24.890 13.959 1.00 50.04 C
ATOM 16 N7 A A2858 19.522 26.031 13.359 1.00 50.49 N
ATOM 17 C5 A A2858 18.239 26.414 13.648 1.00 50.68 C
ATOM 18 C6 A A2858 17.486 27.541 13.302 1.00 51.17 C
ATOM 19 N6 A A2858 17.888 28.530 12.516 1.00 51.58 N
ATOM 20 N1 A A2858 16.261 27.626 13.822 1.00 51.22 N
ATOM 21 C2 A A2858 15.815 26.637 14.608 1.00 50.82 C
ATOM 22 N3 A A2858 16.430 25.523 15.002 1.00 50.35 N
ATOM 23 C4 A A2858 17.657 25.476 14.466 1.00 50.31 C
ATOM 24 P U A2859 17.719 19.711 12.130 1.00 48.77 P
ATOM 25 OP1 U A2859 17.209 18.332 12.151 1.00 48.62 O
ATOM 26 OP2 U A2859 19.005 19.998 11.446 1.00 48.85 O
ATOM 27 O5' U A2859 16.607 20.682 11.516 1.00 49.34 O
TER
ATOM 1 O3' A B2879 19.234 36.336 8.524 1.00 63.08 O
ATOM 2 P G B2880 19.511 36.439 10.086 1.00 60.49 P
ATOM 3 OP1 G B2880 19.292 37.837 10.498 1.00 60.77 O
ATOM 4 OP2 G B2880 20.807 35.836 10.337 1.00 60.03 O
ATOM 5 O5' G B2880 18.367 35.519 10.668 1.00 60.22 O
ATOM 6 C5' G B2880 18.260 35.264 12.043 1.00 59.70 C
ATOM 7 C4' G B2880 17.925 33.842 12.272 1.00 59.30 C
ATOM 8 O4' G B2880 18.519 33.037 11.246 1.00 59.35 O
ATOM 9 C3' G B2880 18.458 33.291 13.538 1.00 58.65 C
ATOM 10 O3' G B2880 17.604 33.577 14.604 1.00 58.51 O
ATOM 11 C2' G B2880 18.653 31.816 13.258 1.00 58.34 C
ATOM 12 O2' G B2880 17.449 31.105 13.446 1.00 58.31 O
ATOM 13 C1' G B2880 18.985 31.829 11.778 1.00 58.79 C
ATOM 14 N9 G B2880 20.426 31.773 11.556 1.00 58.63 N
ATOM 15 C8 G B2880 21.211 32.866 11.344 1.00 58.85 C
ATOM 16 N7 G B2880 22.439 32.540 11.134 1.00 58.65 N
ATOM 17 C5 G B2880 22.470 31.160 11.251 1.00 58.27 C
ATOM 18 C6 G B2880 23.539 30.248 11.180 1.00 57.93 C
ATOM 19 O6 G B2880 24.741 30.459 11.008 1.00 57.87 O
ATOM 20 N1 G B2880 23.122 28.948 11.348 1.00 57.63 N
ATOM 21 C2 G B2880 21.860 28.551 11.586 1.00 57.65 C
ATOM 22 N2 G B2880 21.703 27.238 11.706 1.00 57.34 N
ATOM 23 N3 G B2880 20.865 29.378 11.674 1.00 57.95 N
ATOM 24 C4 G B2880 21.234 30.660 11.503 1.00 58.25 C
ATOM 25 P A B2881 17.973 34.814 15.529 1.00 55.14 P
ATOM 26 OP1 A B2881 16.936 35.858 15.327 1.00 55.66 O
ATOM 27 OP2 A B2881 19.390 35.143 15.226 1.00 55.09 O
ATOM 28 O5' A B2881 17.858 34.178 16.985 1.00 54.53 O
TER
ATOM 2 P A A2858 22.907 22.011 13.256 1.00 49.24 P
ATOM 3 OP1 A A2858 23.357 20.627 13.041 1.00 49.01 O
ATOM 4 OP2 A A2858 23.075 22.997 12.158 1.00 49.77 O
ATOM 5 O5' A A2858 21.402 22.012 13.746 1.00 49.29 O
ATOM 6 C5' A A2858 20.886 20.956 14.536 1.00 48.92 C
ATOM 7 C4' A A2858 19.522 21.297 15.062 1.00 49.01 C
ATOM 8 O4' A A2858 19.564 22.608 15.681 1.00 49.05 O
ATOM 9 C3' A A2858 18.421 21.415 14.024 1.00 49.55 C
ATOM 10 O3' A A2858 17.865 20.164 13.673 1.00 49.54 O
ATOM 11 C2' A A2858 17.428 22.318 14.724 1.00 49.64 C
ATOM 12 O2' A A2858 16.704 21.583 15.686 1.00 49.31 O
ATOM 13 C1' A A2858 18.345 23.282 15.459 1.00 49.44 C
ATOM 14 N9 A A2858 18.587 24.499 14.660 1.00 49.90 N
ATOM 15 C8 A A2858 19.679 24.890 13.959 1.00 50.04 C
ATOM 16 N7 A A2858 19.522 26.031 13.359 1.00 50.49 N
ATOM 17 C5 A A2858 18.239 26.414 13.648 1.00 50.68 C
ATOM 18 C6 A A2858 17.486 27.541 13.302 1.00 51.17 C
ATOM 19 N6 A A2858 17.888 28.530 12.516 1.00 51.58 N
ATOM 20 N1 A A2858 16.261 27.626 13.822 1.00 51.22 N
ATOM 21 C2 A A2858 15.815 26.637 14.608 1.00 50.82 C
ATOM 22 N3 A A2858 16.430 25.523 15.002 1.00 50.35 N
ATOM 23 C4 A A2858 17.657 25.476 14.466 1.00 50.31 C
ATOM 24 P U A2859 17.719 19.711 12.130 1.00 48.77 P
ATOM 25 OP1 U A2859 17.209 18.332 12.151 1.00 48.62 O
ATOM 26 OP2 U A2859 19.005 19.998 11.446 1.00 48.85 O
ATOM 27 O5' U A2859 16.607 20.682 11.516 1.00 49.34 O
TER
ATOM 1 O3' A B2879 19.234 36.336 8.524 1.00 63.08 O
ATOM 2 P G B2880 19.511 36.439 10.086 1.00 60.49 P
ATOM 3 OP1 G B2880 19.292 37.837 10.498 1.00 60.77 O
ATOM 4 OP2 G B2880 20.807 35.836 10.337 1.00 60.03 O
ATOM 5 O5' G B2880 18.367 35.519 10.668 1.00 60.22 O
ATOM 6 C5' G B2880 18.260 35.264 12.043 1.00 59.70 C
ATOM 7 C4' G B2880 17.925 33.842 12.272 1.00 59.30 C
ATOM 8 O4' G B2880 18.519 33.037 11.246 1.00 59.35 O
ATOM 9 C3' G B2880 18.458 33.291 13.538 1.00 58.65 C
ATOM 10 O3' G B2880 17.604 33.577 14.604 1.00 58.51 O
ATOM 11 C2' G B2880 18.653 31.816 13.258 1.00 58.34 C
ATOM 12 O2' G B2880 17.449 31.105 13.446 1.00 58.31 O
ATOM 13 C1' G B2880 18.985 31.829 11.778 1.00 58.79 C
ATOM 14 N9 G B2880 20.426 31.773 11.556 1.00 58.63 N
ATOM 15 C8 G B2880 21.211 32.866 11.344 1.00 58.85 C
ATOM 16 N7 G B2880 22.439 32.540 11.134 1.00 58.65 N
ATOM 17 C5 G B2880 22.470 31.160 11.251 1.00 58.27 C
ATOM 18 C6 G B2880 23.539 30.248 11.180 1.00 57.93 C
ATOM 19 O6 G B2880 24.741 30.459 11.008 1.00 57.87 O
ATOM 20 N1 G B2880 23.122 28.948 11.348 1.00 57.63 N
ATOM 21 C2 G B2880 21.860 28.551 11.586 1.00 57.65 C
ATOM 22 N2 G B2880 21.703 27.238 11.706 1.00 57.34 N
ATOM 23 N3 G B2880 20.865 29.378 11.674 1.00 57.95 N
ATOM 24 C4 G B2880 21.234 30.660 11.503 1.00 58.25 C
ATOM 25 P A B2881 17.973 34.814 15.529 1.00 55.14 P
ATOM 26 OP1 A B2881 16.936 35.858 15.327 1.00 55.66 O
ATOM 27 OP2 A B2881 19.390 35.143 15.226 1.00 55.09 O
ATOM 28 O5' A B2881 17.858 34.178 16.985 1.00 54.53 O
TER
Atoms:
OP1: (23.357,20.627,13.041)
OP2: (23.075,22.997,12.158)
C3': (18.421,21.415,14.024)
C1': (18.345,23.282,15.459)
C5': (20.886,20.956,14.536)
O4': (19.564,22.608,15.681)
C8: (19.679,24.890,13.959)
O2': (16.704,21.583,15.686)
C6: (17.486,27.541,13.302)
C5: (18.239,26.414,13.648)
C4: (17.657,25.476,14.466)
P: (22.907,22.011,13.256)
C4': (19.522,21.297,15.062)
C2': (17.428,22.318,14.724)
C2: (15.815,26.637,14.608)
N1: (16.261,27.626,13.822)
N3: (16.430,25.523,15.002)
N6: (17.888,28.530,12.516)
N7: (19.522,26.031,13.359)
N9: (18.587,24.499,14.660)
O5': (21.402,22.012,13.746)
O3': (17.865,20.164,13.673)
OP2: (23.075,22.997,12.158)
C3': (18.421,21.415,14.024)
C1': (18.345,23.282,15.459)
C5': (20.886,20.956,14.536)
O4': (19.564,22.608,15.681)
C8: (19.679,24.890,13.959)
O2': (16.704,21.583,15.686)
C6: (17.486,27.541,13.302)
C5: (18.239,26.414,13.648)
C4: (17.657,25.476,14.466)
P: (22.907,22.011,13.256)
C4': (19.522,21.297,15.062)
C2': (17.428,22.318,14.724)
C2: (15.815,26.637,14.608)
N1: (16.261,27.626,13.822)
N3: (16.430,25.523,15.002)
N6: (17.888,28.530,12.516)
N7: (19.522,26.031,13.359)
N9: (18.587,24.499,14.660)
O5': (21.402,22.012,13.746)
O3': (17.865,20.164,13.673)
OP1: (19.292,37.837,10.498)
OP2: (20.807,35.836,10.337)
C3': (18.458,33.291,13.538)
C1': (18.985,31.829,11.778)
C5': (18.260,35.264,12.043)
O6: (24.741,30.459,11.008)
O4': (18.519,33.037,11.246)
C8: (21.211,32.866,11.344)
C2: (21.860,28.551,11.586)
C6: (23.539,30.248,11.180)
C5: (22.470,31.160,11.251)
C4: (21.234,30.660,11.503)
P: (19.511,36.439,10.086)
C4': (17.925,33.842,12.272)
C2': (18.653,31.816,13.258)
O2': (17.449,31.105,13.446)
N1: (23.122,28.948,11.348)
N2: (21.703,27.238,11.706)
N3: (20.865,29.378,11.674)
N7: (22.439,32.540,11.134)
N9: (20.426,31.773,11.556)
O5': (18.367,35.519,10.668)
O3': (17.604,33.577,14.604)
OP2: (20.807,35.836,10.337)
C3': (18.458,33.291,13.538)
C1': (18.985,31.829,11.778)
C5': (18.260,35.264,12.043)
O6: (24.741,30.459,11.008)
O4': (18.519,33.037,11.246)
C8: (21.211,32.866,11.344)
C2: (21.860,28.551,11.586)
C6: (23.539,30.248,11.180)
C5: (22.470,31.160,11.251)
C4: (21.234,30.660,11.503)
P: (19.511,36.439,10.086)
C4': (17.925,33.842,12.272)
C2': (18.653,31.816,13.258)
O2': (17.449,31.105,13.446)
N1: (23.122,28.948,11.348)
N2: (21.703,27.238,11.706)
N3: (20.865,29.378,11.674)
N7: (22.439,32.540,11.134)
N9: (20.426,31.773,11.556)
O5': (18.367,35.519,10.668)
O3': (17.604,33.577,14.604)
Image (generated by PyMOL):