Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12489:1720
Extra
PDB:
ATOM 1 O3' A A2488 38.659 -68.330 49.535 1.00 46.71 O
ATOM 2 P C A2489 38.372 -69.786 50.107 1.00 50.67 P
ATOM 3 OP1 C A2489 38.294 -70.715 48.944 1.00 51.18 O
ATOM 4 OP2 C A2489 37.209 -69.666 51.022 1.00 50.53 O
ATOM 5 O5' C A2489 39.679 -70.071 50.941 1.00 50.67 O
ATOM 6 C5' C A2489 39.641 -70.730 52.191 1.00 50.79 C
ATOM 7 C4' C A2489 40.962 -70.575 52.862 1.00 50.66 C
ATOM 8 O4' C A2489 41.085 -69.244 53.434 1.00 50.09 O
ATOM 9 C3' C A2489 41.269 -71.496 54.011 1.00 50.92 C
ATOM 10 O3' C A2489 41.615 -72.808 53.590 1.00 51.49 O
ATOM 11 C2' C A2489 42.412 -70.744 54.679 1.00 50.57 C
ATOM 12 O2' C A2489 43.597 -70.858 53.920 1.00 50.70 O
ATOM 13 C1' C A2489 41.915 -69.302 54.560 1.00 50.01 C
ATOM 14 N1 C A2489 41.136 -68.932 55.716 1.00 49.76 N
ATOM 15 C2 C A2489 41.845 -68.735 56.839 1.00 49.61 C
ATOM 16 O2 C A2489 43.056 -68.819 56.715 1.00 49.67 O
ATOM 17 N3 C A2489 41.241 -68.433 57.984 1.00 49.40 N
ATOM 18 C4 C A2489 39.934 -68.340 58.017 1.00 49.36 C
ATOM 19 N4 C A2489 39.347 -68.032 59.172 1.00 49.16 N
ATOM 20 C5 C A2489 39.172 -68.554 56.865 1.00 49.52 C
ATOM 21 C6 C A2489 39.804 -68.848 55.734 1.00 49.72 C
ATOM 22 P A A2490 41.231 -74.089 54.491 1.00 54.65 P
ATOM 23 OP1 A A2490 41.809 -75.273 53.804 1.00 55.22 O
ATOM 24 OP2 A A2490 39.764 -74.052 54.721 1.00 54.61 O
ATOM 25 O5' A A2490 42.004 -73.800 55.862 1.00 54.42 O
TER
ATOM 1 O3' A B 719 49.054 -74.166 63.767 1.00 70.80 O
ATOM 2 P U B 720 49.891 -73.315 62.677 1.00 75.05 P
ATOM 3 OP1 U B 720 49.453 -73.794 61.348 1.00 75.28 O
ATOM 4 OP2 U B 720 51.328 -73.398 63.030 1.00 75.16 O
ATOM 5 O5' U B 720 49.376 -71.819 62.917 1.00 74.41 O
ATOM 6 C5' U B 720 48.051 -71.423 62.578 1.00 74.20 C
ATOM 7 C4' U B 720 48.025 -70.101 61.822 1.00 73.71 C
ATOM 8 O4' U B 720 46.804 -70.032 61.071 1.00 73.67 O
ATOM 9 C3' U B 720 48.008 -68.831 62.669 1.00 73.19 C
ATOM 10 O3' U B 720 49.298 -68.377 63.044 1.00 73.07 O
ATOM 11 C2' U B 720 47.263 -67.825 61.805 1.00 72.81 C
ATOM 12 O2' U B 720 48.155 -67.146 60.926 1.00 72.64 O
ATOM 13 C1' U B 720 46.345 -68.711 60.982 1.00 73.15 C
ATOM 14 N1 U B 720 44.929 -68.641 61.430 1.00 73.06 N
ATOM 15 C2 U B 720 43.990 -68.543 60.404 1.00 73.04 C
ATOM 16 O2 U B 720 44.344 -68.576 59.251 1.00 73.13 O
ATOM 17 N3 U B 720 42.646 -68.441 60.665 1.00 72.96 N
ATOM 18 C4 U B 720 42.136 -68.407 61.909 1.00 72.88 C
ATOM 19 O4 U B 720 40.914 -68.309 62.040 1.00 72.83 O
ATOM 20 C5 U B 720 43.179 -68.492 62.905 1.00 72.90 C
ATOM 21 C6 U B 720 44.500 -68.587 62.709 1.00 72.97 C
ATOM 22 P U B 721 49.801 -68.538 64.566 1.00 61.45 P
ATOM 23 OP1 U B 721 50.986 -67.596 64.741 1.00 61.16 O
ATOM 24 OP2 U B 721 49.988 -70.006 64.804 1.00 62.02 O
ATOM 25 O5' U B 721 48.557 -68.014 65.430 1.00 61.18 O
TER
ATOM 2 P C A2489 38.372 -69.786 50.107 1.00 50.67 P
ATOM 3 OP1 C A2489 38.294 -70.715 48.944 1.00 51.18 O
ATOM 4 OP2 C A2489 37.209 -69.666 51.022 1.00 50.53 O
ATOM 5 O5' C A2489 39.679 -70.071 50.941 1.00 50.67 O
ATOM 6 C5' C A2489 39.641 -70.730 52.191 1.00 50.79 C
ATOM 7 C4' C A2489 40.962 -70.575 52.862 1.00 50.66 C
ATOM 8 O4' C A2489 41.085 -69.244 53.434 1.00 50.09 O
ATOM 9 C3' C A2489 41.269 -71.496 54.011 1.00 50.92 C
ATOM 10 O3' C A2489 41.615 -72.808 53.590 1.00 51.49 O
ATOM 11 C2' C A2489 42.412 -70.744 54.679 1.00 50.57 C
ATOM 12 O2' C A2489 43.597 -70.858 53.920 1.00 50.70 O
ATOM 13 C1' C A2489 41.915 -69.302 54.560 1.00 50.01 C
ATOM 14 N1 C A2489 41.136 -68.932 55.716 1.00 49.76 N
ATOM 15 C2 C A2489 41.845 -68.735 56.839 1.00 49.61 C
ATOM 16 O2 C A2489 43.056 -68.819 56.715 1.00 49.67 O
ATOM 17 N3 C A2489 41.241 -68.433 57.984 1.00 49.40 N
ATOM 18 C4 C A2489 39.934 -68.340 58.017 1.00 49.36 C
ATOM 19 N4 C A2489 39.347 -68.032 59.172 1.00 49.16 N
ATOM 20 C5 C A2489 39.172 -68.554 56.865 1.00 49.52 C
ATOM 21 C6 C A2489 39.804 -68.848 55.734 1.00 49.72 C
ATOM 22 P A A2490 41.231 -74.089 54.491 1.00 54.65 P
ATOM 23 OP1 A A2490 41.809 -75.273 53.804 1.00 55.22 O
ATOM 24 OP2 A A2490 39.764 -74.052 54.721 1.00 54.61 O
ATOM 25 O5' A A2490 42.004 -73.800 55.862 1.00 54.42 O
TER
ATOM 1 O3' A B 719 49.054 -74.166 63.767 1.00 70.80 O
ATOM 2 P U B 720 49.891 -73.315 62.677 1.00 75.05 P
ATOM 3 OP1 U B 720 49.453 -73.794 61.348 1.00 75.28 O
ATOM 4 OP2 U B 720 51.328 -73.398 63.030 1.00 75.16 O
ATOM 5 O5' U B 720 49.376 -71.819 62.917 1.00 74.41 O
ATOM 6 C5' U B 720 48.051 -71.423 62.578 1.00 74.20 C
ATOM 7 C4' U B 720 48.025 -70.101 61.822 1.00 73.71 C
ATOM 8 O4' U B 720 46.804 -70.032 61.071 1.00 73.67 O
ATOM 9 C3' U B 720 48.008 -68.831 62.669 1.00 73.19 C
ATOM 10 O3' U B 720 49.298 -68.377 63.044 1.00 73.07 O
ATOM 11 C2' U B 720 47.263 -67.825 61.805 1.00 72.81 C
ATOM 12 O2' U B 720 48.155 -67.146 60.926 1.00 72.64 O
ATOM 13 C1' U B 720 46.345 -68.711 60.982 1.00 73.15 C
ATOM 14 N1 U B 720 44.929 -68.641 61.430 1.00 73.06 N
ATOM 15 C2 U B 720 43.990 -68.543 60.404 1.00 73.04 C
ATOM 16 O2 U B 720 44.344 -68.576 59.251 1.00 73.13 O
ATOM 17 N3 U B 720 42.646 -68.441 60.665 1.00 72.96 N
ATOM 18 C4 U B 720 42.136 -68.407 61.909 1.00 72.88 C
ATOM 19 O4 U B 720 40.914 -68.309 62.040 1.00 72.83 O
ATOM 20 C5 U B 720 43.179 -68.492 62.905 1.00 72.90 C
ATOM 21 C6 U B 720 44.500 -68.587 62.709 1.00 72.97 C
ATOM 22 P U B 721 49.801 -68.538 64.566 1.00 61.45 P
ATOM 23 OP1 U B 721 50.986 -67.596 64.741 1.00 61.16 O
ATOM 24 OP2 U B 721 49.988 -70.006 64.804 1.00 62.02 O
ATOM 25 O5' U B 721 48.557 -68.014 65.430 1.00 61.18 O
TER
Atoms:
C2: (41.845,-68.735,56.839)
OP1: (38.294,-70.715,48.944)
OP2: (37.209,-69.666,51.022)
C4: (39.934,-68.340,58.017)
O5': (39.679,-70.071,50.941)
C3': (41.269,-71.496,54.011)
C1': (41.915,-69.302,54.560)
O4': (41.085,-69.244,53.434)
C5': (39.641,-70.730,52.191)
P: (38.372,-69.786,50.107)
O2: (43.056,-68.819,56.715)
C4': (40.962,-70.575,52.862)
C2': (42.412,-70.744,54.679)
O2': (43.597,-70.858,53.920)
N1: (41.136,-68.932,55.716)
N3: (41.241,-68.433,57.984)
N4: (39.347,-68.032,59.172)
C6: (39.804,-68.848,55.734)
C5: (39.172,-68.554,56.865)
O3': (41.615,-72.808,53.590)
OP1: (38.294,-70.715,48.944)
OP2: (37.209,-69.666,51.022)
C4: (39.934,-68.340,58.017)
O5': (39.679,-70.071,50.941)
C3': (41.269,-71.496,54.011)
C1': (41.915,-69.302,54.560)
O4': (41.085,-69.244,53.434)
C5': (39.641,-70.730,52.191)
P: (38.372,-69.786,50.107)
O2: (43.056,-68.819,56.715)
C4': (40.962,-70.575,52.862)
C2': (42.412,-70.744,54.679)
O2': (43.597,-70.858,53.920)
N1: (41.136,-68.932,55.716)
N3: (41.241,-68.433,57.984)
N4: (39.347,-68.032,59.172)
C6: (39.804,-68.848,55.734)
C5: (39.172,-68.554,56.865)
O3': (41.615,-72.808,53.590)
C4: (42.136,-68.407,61.909)
N3: (42.646,-68.441,60.665)
OP1: (49.453,-73.794,61.348)
OP2: (51.328,-73.398,63.030)
C2: (43.990,-68.543,60.404)
C1': (46.345,-68.711,60.982)
C3': (48.008,-68.831,62.669)
O5': (49.376,-71.819,62.917)
O4': (46.804,-70.032,61.071)
C5': (48.051,-71.423,62.578)
P: (49.891,-73.315,62.677)
C4': (48.025,-70.101,61.822)
C2': (47.263,-67.825,61.805)
O2': (48.155,-67.146,60.926)
N1: (44.929,-68.641,61.430)
O4: (40.914,-68.309,62.040)
O2: (44.344,-68.576,59.251)
C6: (44.500,-68.587,62.709)
C5: (43.179,-68.492,62.905)
O3': (49.298,-68.377,63.044)
N3: (42.646,-68.441,60.665)
OP1: (49.453,-73.794,61.348)
OP2: (51.328,-73.398,63.030)
C2: (43.990,-68.543,60.404)
C1': (46.345,-68.711,60.982)
C3': (48.008,-68.831,62.669)
O5': (49.376,-71.819,62.917)
O4': (46.804,-70.032,61.071)
C5': (48.051,-71.423,62.578)
P: (49.891,-73.315,62.677)
C4': (48.025,-70.101,61.822)
C2': (47.263,-67.825,61.805)
O2': (48.155,-67.146,60.926)
N1: (44.929,-68.641,61.430)
O4: (40.914,-68.309,62.040)
O2: (44.344,-68.576,59.251)
C6: (44.500,-68.587,62.709)
C5: (43.179,-68.492,62.905)
O3': (49.298,-68.377,63.044)
Image (generated by PyMOL):