Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A1470:A1507
Extra
PDB:
ATOM 1 O3' U A1469 1.390 -9.491 11.257 1.00 19.62 O
ATOM 2 P A A1470 0.022 -8.650 11.235 1.00 14.76 P
ATOM 3 OP1 A A1470 0.295 -7.400 10.440 1.00 14.76 O
ATOM 4 OP2 A A1470 -0.473 -8.522 12.662 1.00 14.76 O
ATOM 5 O5' A A1470 -0.933 -9.608 10.408 1.00 14.76 O
ATOM 6 C5' A A1470 -0.713 -9.821 9.027 1.00 14.76 C
ATOM 7 C4' A A1470 -1.918 -10.427 8.383 1.00 14.76 C
ATOM 8 O4' A A1470 -2.055 -11.798 8.816 1.00 14.76 O
ATOM 9 C3' A A1470 -3.242 -9.783 8.737 1.00 14.76 C
ATOM 10 O3' A A1470 -3.517 -8.668 7.934 1.00 14.76 O
ATOM 11 C2' A A1470 -4.227 -10.914 8.529 1.00 14.76 C
ATOM 12 O2' A A1470 -4.530 -11.073 7.147 1.00 14.76 O
ATOM 13 C1' A A1470 -3.412 -12.111 8.996 1.00 14.76 C
ATOM 14 N9 A A1470 -3.620 -12.395 10.418 1.00 14.66 N
ATOM 15 C8 A A1470 -2.810 -11.994 11.429 1.00 14.66 C
ATOM 16 N7 A A1470 -3.208 -12.391 12.606 1.00 14.66 N
ATOM 17 C5 A A1470 -4.343 -13.099 12.345 1.00 14.66 C
ATOM 18 C6 A A1470 -5.195 -13.770 13.194 1.00 14.66 C
ATOM 19 N6 A A1470 -5.043 -13.826 14.511 1.00 14.66 N
ATOM 20 N1 A A1470 -6.225 -14.394 12.623 1.00 14.66 N
ATOM 21 C2 A A1470 -6.374 -14.326 11.298 1.00 14.66 C
ATOM 22 N3 A A1470 -5.629 -13.715 10.393 1.00 14.66 N
ATOM 23 C4 A A1470 -4.611 -13.122 11.002 1.00 14.66 C
ATOM 24 P G A1471 -3.879 -7.253 8.586 1.00 9.68 P
ATOM 25 OP1 G A1471 -4.337 -6.381 7.465 1.00 9.68 O
ATOM 26 OP2 G A1471 -2.697 -6.832 9.402 1.00 9.68 O
ATOM 27 O5' G A1471 -5.103 -7.590 9.553 1.00 9.68 O
TER
ATOM 1 O3' U B1506 -6.853 -15.387 23.314 1.00 26.53 O
ATOM 2 P G B1507 -5.884 -16.601 22.973 1.00 20.45 P
ATOM 3 OP1 G B1507 -6.584 -17.836 23.340 1.00 20.45 O
ATOM 4 OP2 G B1507 -4.591 -16.306 23.608 1.00 20.45 O
ATOM 5 O5' G B1507 -5.752 -16.497 21.398 1.00 20.45 O
ATOM 6 C5' G B1507 -6.904 -16.408 20.577 1.00 20.45 C
ATOM 7 C4' G B1507 -6.544 -16.031 19.162 1.00 20.45 C
ATOM 8 O4' G B1507 -6.059 -14.676 19.128 1.00 20.45 O
ATOM 9 C3' G B1507 -5.435 -16.851 18.523 1.00 20.45 C
ATOM 10 O3' G B1507 -5.922 -18.027 17.941 1.00 20.45 O
ATOM 11 C2' G B1507 -4.825 -15.903 17.503 1.00 20.45 C
ATOM 12 O2' G B1507 -5.517 -15.968 16.265 1.00 20.45 O
ATOM 13 C1' G B1507 -5.071 -14.539 18.137 1.00 20.45 C
ATOM 14 N9 G B1507 -3.858 -13.984 18.754 1.00 20.93 N
ATOM 15 C8 G B1507 -3.368 -14.053 20.040 1.00 20.93 C
ATOM 16 N7 G B1507 -2.250 -13.388 20.187 1.00 20.93 N
ATOM 17 C5 G B1507 -2.007 -12.859 18.926 1.00 20.93 C
ATOM 18 C6 G B1507 -0.958 -12.049 18.437 1.00 20.93 C
ATOM 19 O6 G B1507 0.024 -11.609 19.058 1.00 20.93 O
ATOM 20 N1 G B1507 -1.142 -11.773 17.086 1.00 20.93 N
ATOM 21 C2 G B1507 -2.178 -12.207 16.318 1.00 20.93 C
ATOM 22 N2 G B1507 -2.181 -11.822 15.045 1.00 20.93 N
ATOM 23 N3 G B1507 -3.158 -12.947 16.752 1.00 20.93 N
ATOM 24 C4 G B1507 -2.994 -13.223 18.047 1.00 20.93 C
ATOM 25 P A B1508 -5.620 -19.453 18.596 1.00 6.34 P
ATOM 26 OP1 A B1508 -6.705 -19.729 19.586 1.00 6.34 O
ATOM 27 OP2 A B1508 -4.200 -19.450 19.047 1.00 6.34 O
ATOM 28 O5' A B1508 -5.770 -20.403 17.344 1.00 6.34 O
TER
ATOM 2 P A A1470 0.022 -8.650 11.235 1.00 14.76 P
ATOM 3 OP1 A A1470 0.295 -7.400 10.440 1.00 14.76 O
ATOM 4 OP2 A A1470 -0.473 -8.522 12.662 1.00 14.76 O
ATOM 5 O5' A A1470 -0.933 -9.608 10.408 1.00 14.76 O
ATOM 6 C5' A A1470 -0.713 -9.821 9.027 1.00 14.76 C
ATOM 7 C4' A A1470 -1.918 -10.427 8.383 1.00 14.76 C
ATOM 8 O4' A A1470 -2.055 -11.798 8.816 1.00 14.76 O
ATOM 9 C3' A A1470 -3.242 -9.783 8.737 1.00 14.76 C
ATOM 10 O3' A A1470 -3.517 -8.668 7.934 1.00 14.76 O
ATOM 11 C2' A A1470 -4.227 -10.914 8.529 1.00 14.76 C
ATOM 12 O2' A A1470 -4.530 -11.073 7.147 1.00 14.76 O
ATOM 13 C1' A A1470 -3.412 -12.111 8.996 1.00 14.76 C
ATOM 14 N9 A A1470 -3.620 -12.395 10.418 1.00 14.66 N
ATOM 15 C8 A A1470 -2.810 -11.994 11.429 1.00 14.66 C
ATOM 16 N7 A A1470 -3.208 -12.391 12.606 1.00 14.66 N
ATOM 17 C5 A A1470 -4.343 -13.099 12.345 1.00 14.66 C
ATOM 18 C6 A A1470 -5.195 -13.770 13.194 1.00 14.66 C
ATOM 19 N6 A A1470 -5.043 -13.826 14.511 1.00 14.66 N
ATOM 20 N1 A A1470 -6.225 -14.394 12.623 1.00 14.66 N
ATOM 21 C2 A A1470 -6.374 -14.326 11.298 1.00 14.66 C
ATOM 22 N3 A A1470 -5.629 -13.715 10.393 1.00 14.66 N
ATOM 23 C4 A A1470 -4.611 -13.122 11.002 1.00 14.66 C
ATOM 24 P G A1471 -3.879 -7.253 8.586 1.00 9.68 P
ATOM 25 OP1 G A1471 -4.337 -6.381 7.465 1.00 9.68 O
ATOM 26 OP2 G A1471 -2.697 -6.832 9.402 1.00 9.68 O
ATOM 27 O5' G A1471 -5.103 -7.590 9.553 1.00 9.68 O
TER
ATOM 1 O3' U B1506 -6.853 -15.387 23.314 1.00 26.53 O
ATOM 2 P G B1507 -5.884 -16.601 22.973 1.00 20.45 P
ATOM 3 OP1 G B1507 -6.584 -17.836 23.340 1.00 20.45 O
ATOM 4 OP2 G B1507 -4.591 -16.306 23.608 1.00 20.45 O
ATOM 5 O5' G B1507 -5.752 -16.497 21.398 1.00 20.45 O
ATOM 6 C5' G B1507 -6.904 -16.408 20.577 1.00 20.45 C
ATOM 7 C4' G B1507 -6.544 -16.031 19.162 1.00 20.45 C
ATOM 8 O4' G B1507 -6.059 -14.676 19.128 1.00 20.45 O
ATOM 9 C3' G B1507 -5.435 -16.851 18.523 1.00 20.45 C
ATOM 10 O3' G B1507 -5.922 -18.027 17.941 1.00 20.45 O
ATOM 11 C2' G B1507 -4.825 -15.903 17.503 1.00 20.45 C
ATOM 12 O2' G B1507 -5.517 -15.968 16.265 1.00 20.45 O
ATOM 13 C1' G B1507 -5.071 -14.539 18.137 1.00 20.45 C
ATOM 14 N9 G B1507 -3.858 -13.984 18.754 1.00 20.93 N
ATOM 15 C8 G B1507 -3.368 -14.053 20.040 1.00 20.93 C
ATOM 16 N7 G B1507 -2.250 -13.388 20.187 1.00 20.93 N
ATOM 17 C5 G B1507 -2.007 -12.859 18.926 1.00 20.93 C
ATOM 18 C6 G B1507 -0.958 -12.049 18.437 1.00 20.93 C
ATOM 19 O6 G B1507 0.024 -11.609 19.058 1.00 20.93 O
ATOM 20 N1 G B1507 -1.142 -11.773 17.086 1.00 20.93 N
ATOM 21 C2 G B1507 -2.178 -12.207 16.318 1.00 20.93 C
ATOM 22 N2 G B1507 -2.181 -11.822 15.045 1.00 20.93 N
ATOM 23 N3 G B1507 -3.158 -12.947 16.752 1.00 20.93 N
ATOM 24 C4 G B1507 -2.994 -13.223 18.047 1.00 20.93 C
ATOM 25 P A B1508 -5.620 -19.453 18.596 1.00 6.34 P
ATOM 26 OP1 A B1508 -6.705 -19.729 19.586 1.00 6.34 O
ATOM 27 OP2 A B1508 -4.200 -19.450 19.047 1.00 6.34 O
ATOM 28 O5' A B1508 -5.770 -20.403 17.344 1.00 6.34 O
TER
Atoms:
OP1: (0.295,-7.400,10.440)
OP2: (-0.473,-8.522,12.662)
C3': (-3.242,-9.783,8.737)
C1': (-3.412,-12.111,8.996)
C5': (-0.713,-9.821,9.027)
O4': (-2.055,-11.798,8.816)
C8: (-2.810,-11.994,11.429)
O2': (-4.530,-11.073,7.147)
C6: (-5.195,-13.770,13.194)
C5: (-4.343,-13.099,12.345)
C4: (-4.611,-13.122,11.002)
P: (0.022,-8.650,11.235)
C4': (-1.918,-10.427,8.383)
C2': (-4.227,-10.914,8.529)
C2: (-6.374,-14.326,11.298)
N1: (-6.225,-14.394,12.623)
N3: (-5.629,-13.715,10.393)
N6: (-5.043,-13.826,14.511)
N7: (-3.208,-12.391,12.606)
N9: (-3.620,-12.395,10.418)
O5': (-0.933,-9.608,10.408)
O3': (-3.517,-8.668,7.934)
OP2: (-0.473,-8.522,12.662)
C3': (-3.242,-9.783,8.737)
C1': (-3.412,-12.111,8.996)
C5': (-0.713,-9.821,9.027)
O4': (-2.055,-11.798,8.816)
C8: (-2.810,-11.994,11.429)
O2': (-4.530,-11.073,7.147)
C6: (-5.195,-13.770,13.194)
C5: (-4.343,-13.099,12.345)
C4: (-4.611,-13.122,11.002)
P: (0.022,-8.650,11.235)
C4': (-1.918,-10.427,8.383)
C2': (-4.227,-10.914,8.529)
C2: (-6.374,-14.326,11.298)
N1: (-6.225,-14.394,12.623)
N3: (-5.629,-13.715,10.393)
N6: (-5.043,-13.826,14.511)
N7: (-3.208,-12.391,12.606)
N9: (-3.620,-12.395,10.418)
O5': (-0.933,-9.608,10.408)
O3': (-3.517,-8.668,7.934)
OP1: (-6.584,-17.836,23.340)
OP2: (-4.591,-16.306,23.608)
C3': (-5.435,-16.851,18.523)
C1': (-5.071,-14.539,18.137)
C5': (-6.904,-16.408,20.577)
O6: (0.024,-11.609,19.058)
O4': (-6.059,-14.676,19.128)
C8: (-3.368,-14.053,20.040)
C2: (-2.178,-12.207,16.318)
C6: (-0.958,-12.049,18.437)
C5: (-2.007,-12.859,18.926)
C4: (-2.994,-13.223,18.047)
P: (-5.884,-16.601,22.973)
C4': (-6.544,-16.031,19.162)
C2': (-4.825,-15.903,17.503)
O2': (-5.517,-15.968,16.265)
N1: (-1.142,-11.773,17.086)
N2: (-2.181,-11.822,15.045)
N3: (-3.158,-12.947,16.752)
N7: (-2.250,-13.388,20.187)
N9: (-3.858,-13.984,18.754)
O5': (-5.752,-16.497,21.398)
O3': (-5.922,-18.027,17.941)
OP2: (-4.591,-16.306,23.608)
C3': (-5.435,-16.851,18.523)
C1': (-5.071,-14.539,18.137)
C5': (-6.904,-16.408,20.577)
O6: (0.024,-11.609,19.058)
O4': (-6.059,-14.676,19.128)
C8: (-3.368,-14.053,20.040)
C2: (-2.178,-12.207,16.318)
C6: (-0.958,-12.049,18.437)
C5: (-2.007,-12.859,18.926)
C4: (-2.994,-13.223,18.047)
P: (-5.884,-16.601,22.973)
C4': (-6.544,-16.031,19.162)
C2': (-4.825,-15.903,17.503)
O2': (-5.517,-15.968,16.265)
N1: (-1.142,-11.773,17.086)
N2: (-2.181,-11.822,15.045)
N3: (-3.158,-12.947,16.752)
N7: (-2.250,-13.388,20.187)
N9: (-3.858,-13.984,18.754)
O5': (-5.752,-16.497,21.398)
O3': (-5.922,-18.027,17.941)
Image (generated by PyMOL):