Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:01253:0898
Extra
PDB:
ATOM 1 O3' U A1252 38.027 103.767 82.561 1.00 37.96 O
ATOM 2 P A A1253 37.933 103.600 80.979 1.00 39.19 P
ATOM 3 OP1 A A1253 38.236 104.925 80.392 1.00 40.12 O
ATOM 4 OP2 A A1253 36.624 102.942 80.697 1.00 39.94 O
ATOM 5 O5' A A1253 39.123 102.602 80.623 1.00 36.22 O
ATOM 6 C5' A A1253 40.479 102.986 80.848 1.00 34.97 C
ATOM 7 C4' A A1253 41.416 101.869 80.475 1.00 34.88 C
ATOM 8 O4' A A1253 41.309 100.783 81.422 1.00 36.23 O
ATOM 9 C3' A A1253 41.174 101.221 79.131 1.00 34.54 C
ATOM 10 O3' A A1253 41.770 101.995 78.108 1.00 36.37 O
ATOM 11 C2' A A1253 41.865 99.875 79.294 1.00 35.78 C
ATOM 12 O2' A A1253 43.258 99.950 79.127 1.00 39.23 O
ATOM 13 C1' A A1253 41.570 99.556 80.761 1.00 35.93 C
ATOM 14 N9 A A1253 40.412 98.678 80.927 1.00 37.00 N
ATOM 15 C8 A A1253 39.153 98.994 81.380 1.00 36.30 C
ATOM 16 N7 A A1253 38.324 97.982 81.371 1.00 37.23 N
ATOM 17 C5 A A1253 39.087 96.928 80.887 1.00 35.53 C
ATOM 18 C6 A A1253 38.787 95.582 80.632 1.00 34.19 C
ATOM 19 N6 A A1253 37.586 95.034 80.828 1.00 32.48 N
ATOM 20 N1 A A1253 39.775 94.801 80.158 1.00 34.88 N
ATOM 21 C2 A A1253 40.976 95.339 79.960 1.00 36.47 C
ATOM 22 N3 A A1253 41.383 96.587 80.162 1.00 37.25 N
ATOM 23 C4 A A1253 40.376 97.340 80.626 1.00 35.78 C
ATOM 24 P G A1254 40.951 102.309 76.766 1.00 37.88 P
ATOM 25 OP1 G A1254 41.912 102.945 75.831 1.00 37.11 O
ATOM 26 OP2 G A1254 39.686 103.017 77.125 1.00 36.06 O
ATOM 27 O5' G A1254 40.612 100.866 76.194 1.00 35.95 O
TER
ATOM 1 O3' C B 897 30.187 89.451 80.944 1.00 36.59 O
ATOM 2 P G B 898 30.523 89.707 82.501 1.00 37.18 P
ATOM 3 OP1 G B 898 30.617 88.383 83.168 1.00 35.71 O
ATOM 4 OP2 G B 898 29.579 90.729 83.022 1.00 35.45 O
ATOM 5 O5' G B 898 31.971 90.379 82.498 1.00 39.61 O
ATOM 6 C5' G B 898 33.091 89.768 81.810 1.00 38.70 C
ATOM 7 C4' G B 898 34.235 90.758 81.677 1.00 38.40 C
ATOM 8 O4' G B 898 33.819 91.882 80.859 1.00 37.99 O
ATOM 9 C3' G B 898 34.714 91.416 82.962 1.00 38.26 C
ATOM 10 O3' G B 898 35.604 90.584 83.703 1.00 36.15 O
ATOM 11 C2' G B 898 35.392 92.671 82.441 1.00 37.74 C
ATOM 12 O2' G B 898 36.644 92.377 81.849 1.00 42.36 O
ATOM 13 C1' G B 898 34.434 93.074 81.327 1.00 37.53 C
ATOM 14 N9 G B 898 33.380 93.971 81.776 1.00 37.36 N
ATOM 15 C8 G B 898 32.089 93.617 82.060 1.00 40.25 C
ATOM 16 N7 G B 898 31.345 94.630 82.407 1.00 41.39 N
ATOM 17 C5 G B 898 32.198 95.716 82.358 1.00 37.93 C
ATOM 18 C6 G B 898 31.944 97.068 82.611 1.00 38.25 C
ATOM 19 O6 G B 898 30.880 97.597 82.934 1.00 42.95 O
ATOM 20 N1 G B 898 33.079 97.843 82.444 1.00 34.97 N
ATOM 21 C2 G B 898 34.302 97.373 82.075 1.00 33.24 C
ATOM 22 N2 G B 898 35.261 98.292 81.965 1.00 30.83 N
ATOM 23 N3 G B 898 34.559 96.098 81.830 1.00 35.36 N
ATOM 24 C4 G B 898 33.463 95.330 81.984 1.00 37.10 C
ATOM 25 P A B 899 35.838 90.874 85.268 1.00 35.39 P
ATOM 26 OP1 A B 899 36.275 89.597 85.875 1.00 30.03 O
ATOM 27 OP2 A B 899 34.652 91.582 85.827 1.00 30.98 O
ATOM 28 O5' A B 899 37.042 91.918 85.248 1.00 34.91 O
TER
ATOM 2 P A A1253 37.933 103.600 80.979 1.00 39.19 P
ATOM 3 OP1 A A1253 38.236 104.925 80.392 1.00 40.12 O
ATOM 4 OP2 A A1253 36.624 102.942 80.697 1.00 39.94 O
ATOM 5 O5' A A1253 39.123 102.602 80.623 1.00 36.22 O
ATOM 6 C5' A A1253 40.479 102.986 80.848 1.00 34.97 C
ATOM 7 C4' A A1253 41.416 101.869 80.475 1.00 34.88 C
ATOM 8 O4' A A1253 41.309 100.783 81.422 1.00 36.23 O
ATOM 9 C3' A A1253 41.174 101.221 79.131 1.00 34.54 C
ATOM 10 O3' A A1253 41.770 101.995 78.108 1.00 36.37 O
ATOM 11 C2' A A1253 41.865 99.875 79.294 1.00 35.78 C
ATOM 12 O2' A A1253 43.258 99.950 79.127 1.00 39.23 O
ATOM 13 C1' A A1253 41.570 99.556 80.761 1.00 35.93 C
ATOM 14 N9 A A1253 40.412 98.678 80.927 1.00 37.00 N
ATOM 15 C8 A A1253 39.153 98.994 81.380 1.00 36.30 C
ATOM 16 N7 A A1253 38.324 97.982 81.371 1.00 37.23 N
ATOM 17 C5 A A1253 39.087 96.928 80.887 1.00 35.53 C
ATOM 18 C6 A A1253 38.787 95.582 80.632 1.00 34.19 C
ATOM 19 N6 A A1253 37.586 95.034 80.828 1.00 32.48 N
ATOM 20 N1 A A1253 39.775 94.801 80.158 1.00 34.88 N
ATOM 21 C2 A A1253 40.976 95.339 79.960 1.00 36.47 C
ATOM 22 N3 A A1253 41.383 96.587 80.162 1.00 37.25 N
ATOM 23 C4 A A1253 40.376 97.340 80.626 1.00 35.78 C
ATOM 24 P G A1254 40.951 102.309 76.766 1.00 37.88 P
ATOM 25 OP1 G A1254 41.912 102.945 75.831 1.00 37.11 O
ATOM 26 OP2 G A1254 39.686 103.017 77.125 1.00 36.06 O
ATOM 27 O5' G A1254 40.612 100.866 76.194 1.00 35.95 O
TER
ATOM 1 O3' C B 897 30.187 89.451 80.944 1.00 36.59 O
ATOM 2 P G B 898 30.523 89.707 82.501 1.00 37.18 P
ATOM 3 OP1 G B 898 30.617 88.383 83.168 1.00 35.71 O
ATOM 4 OP2 G B 898 29.579 90.729 83.022 1.00 35.45 O
ATOM 5 O5' G B 898 31.971 90.379 82.498 1.00 39.61 O
ATOM 6 C5' G B 898 33.091 89.768 81.810 1.00 38.70 C
ATOM 7 C4' G B 898 34.235 90.758 81.677 1.00 38.40 C
ATOM 8 O4' G B 898 33.819 91.882 80.859 1.00 37.99 O
ATOM 9 C3' G B 898 34.714 91.416 82.962 1.00 38.26 C
ATOM 10 O3' G B 898 35.604 90.584 83.703 1.00 36.15 O
ATOM 11 C2' G B 898 35.392 92.671 82.441 1.00 37.74 C
ATOM 12 O2' G B 898 36.644 92.377 81.849 1.00 42.36 O
ATOM 13 C1' G B 898 34.434 93.074 81.327 1.00 37.53 C
ATOM 14 N9 G B 898 33.380 93.971 81.776 1.00 37.36 N
ATOM 15 C8 G B 898 32.089 93.617 82.060 1.00 40.25 C
ATOM 16 N7 G B 898 31.345 94.630 82.407 1.00 41.39 N
ATOM 17 C5 G B 898 32.198 95.716 82.358 1.00 37.93 C
ATOM 18 C6 G B 898 31.944 97.068 82.611 1.00 38.25 C
ATOM 19 O6 G B 898 30.880 97.597 82.934 1.00 42.95 O
ATOM 20 N1 G B 898 33.079 97.843 82.444 1.00 34.97 N
ATOM 21 C2 G B 898 34.302 97.373 82.075 1.00 33.24 C
ATOM 22 N2 G B 898 35.261 98.292 81.965 1.00 30.83 N
ATOM 23 N3 G B 898 34.559 96.098 81.830 1.00 35.36 N
ATOM 24 C4 G B 898 33.463 95.330 81.984 1.00 37.10 C
ATOM 25 P A B 899 35.838 90.874 85.268 1.00 35.39 P
ATOM 26 OP1 A B 899 36.275 89.597 85.875 1.00 30.03 O
ATOM 27 OP2 A B 899 34.652 91.582 85.827 1.00 30.98 O
ATOM 28 O5' A B 899 37.042 91.918 85.248 1.00 34.91 O
TER
Atoms:
OP1: (38.236,104.925,80.392)
OP2: (36.624,102.942,80.697)
C3': (41.174,101.221,79.131)
C1': (41.570,99.556,80.761)
C5': (40.479,102.986,80.848)
O4': (41.309,100.783,81.422)
C8: (39.153,98.994,81.380)
O2': (43.258,99.950,79.127)
C6: (38.787,95.582,80.632)
C5: (39.087,96.928,80.887)
C4: (40.376,97.340,80.626)
P: (37.933,103.600,80.979)
C4': (41.416,101.869,80.475)
C2': (41.865,99.875,79.294)
C2: (40.976,95.339,79.960)
N1: (39.775,94.801,80.158)
N3: (41.383,96.587,80.162)
N6: (37.586,95.034,80.828)
N7: (38.324,97.982,81.371)
N9: (40.412,98.678,80.927)
O5': (39.123,102.602,80.623)
O3': (41.770,101.995,78.108)
OP2: (36.624,102.942,80.697)
C3': (41.174,101.221,79.131)
C1': (41.570,99.556,80.761)
C5': (40.479,102.986,80.848)
O4': (41.309,100.783,81.422)
C8: (39.153,98.994,81.380)
O2': (43.258,99.950,79.127)
C6: (38.787,95.582,80.632)
C5: (39.087,96.928,80.887)
C4: (40.376,97.340,80.626)
P: (37.933,103.600,80.979)
C4': (41.416,101.869,80.475)
C2': (41.865,99.875,79.294)
C2: (40.976,95.339,79.960)
N1: (39.775,94.801,80.158)
N3: (41.383,96.587,80.162)
N6: (37.586,95.034,80.828)
N7: (38.324,97.982,81.371)
N9: (40.412,98.678,80.927)
O5': (39.123,102.602,80.623)
O3': (41.770,101.995,78.108)
OP1: (30.617,88.383,83.168)
OP2: (29.579,90.729,83.022)
C3': (34.714,91.416,82.962)
C1': (34.434,93.074,81.327)
C5': (33.091,89.768,81.810)
O6: (30.880,97.597,82.934)
O4': (33.819,91.882,80.859)
C8: (32.089,93.617,82.060)
C2: (34.302,97.373,82.075)
C6: (31.944,97.068,82.611)
C5: (32.198,95.716,82.358)
C4: (33.463,95.330,81.984)
P: (30.523,89.707,82.501)
C4': (34.235,90.758,81.677)
C2': (35.392,92.671,82.441)
O2': (36.644,92.377,81.849)
N1: (33.079,97.843,82.444)
N2: (35.261,98.292,81.965)
N3: (34.559,96.098,81.830)
N7: (31.345,94.630,82.407)
N9: (33.380,93.971,81.776)
O5': (31.971,90.379,82.498)
O3': (35.604,90.584,83.703)
OP2: (29.579,90.729,83.022)
C3': (34.714,91.416,82.962)
C1': (34.434,93.074,81.327)
C5': (33.091,89.768,81.810)
O6: (30.880,97.597,82.934)
O4': (33.819,91.882,80.859)
C8: (32.089,93.617,82.060)
C2: (34.302,97.373,82.075)
C6: (31.944,97.068,82.611)
C5: (32.198,95.716,82.358)
C4: (33.463,95.330,81.984)
P: (30.523,89.707,82.501)
C4': (34.235,90.758,81.677)
C2': (35.392,92.671,82.441)
O2': (36.644,92.377,81.849)
N1: (33.079,97.843,82.444)
N2: (35.261,98.292,81.965)
N3: (34.559,96.098,81.830)
N7: (31.345,94.630,82.407)
N9: (33.380,93.971,81.776)
O5': (31.971,90.379,82.498)
O3': (35.604,90.584,83.703)
Image (generated by PyMOL):