Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A555:A536
Extra
PDB:
ATOM 1 O3' G A 554 -68.058-106.927 -4.889 1.00 0.01 O
ATOM 2 P A A 555 -68.950-105.734 -5.426 1.00 0.01 P
ATOM 3 OP1 A A 555 -68.233-104.495 -5.176 1.00 0.01 O
ATOM 4 OP2 A A 555 -70.274-105.897 -4.855 1.00 0.01 O
ATOM 5 O5' A A 555 -68.989-106.016 -6.980 1.00 0.01 O
ATOM 6 C5' A A 555 -67.811-106.364 -7.685 1.00 0.01 C
ATOM 7 C4' A A 555 -68.142-107.019 -8.992 1.00 0.01 C
ATOM 8 O4' A A 555 -68.130-108.452 -8.843 1.00 0.01 O
ATOM 9 C3' A A 555 -69.505-106.699 -9.541 1.00 0.01 C
ATOM 10 O3' A A 555 -69.493-105.503 -10.264 1.00 0.01 O
ATOM 11 C2' A A 555 -69.827-107.920 -10.376 1.00 0.01 C
ATOM 12 O2' A A 555 -69.172-107.861 -11.623 1.00 0.01 O
ATOM 13 C1' A A 555 -69.192-109.023 -9.544 1.00 0.01 C
ATOM 14 N9 A A 555 -70.129-109.557 -8.549 1.00 0.04 N
ATOM 15 C8 A A 555 -70.189-109.190 -7.234 1.00 0.04 C
ATOM 16 N7 A A 555 -71.140-109.796 -6.583 1.00 0.04 N
ATOM 17 C5 A A 555 -71.740-110.624 -7.528 1.00 0.04 C
ATOM 18 C6 A A 555 -72.805-111.542 -7.481 1.00 0.04 C
ATOM 19 N6 A A 555 -73.525-111.813 -6.408 1.00 0.04 N
ATOM 20 N1 A A 555 -73.138-112.195 -8.594 1.00 0.04 N
ATOM 21 C2 A A 555 -72.443-111.949 -9.697 1.00 0.04 C
ATOM 22 N3 A A 555 -71.433-111.119 -9.878 1.00 0.04 N
ATOM 23 C4 A A 555 -71.121-110.482 -8.744 1.00 0.04 C
ATOM 24 P C A 556 -70.844-104.860 -10.743 1.00 0.01 P
ATOM 25 OP1 C A 556 -70.593-104.212 -12.050 1.00 0.01 O
ATOM 26 OP2 C A 556 -71.352-104.060 -9.652 1.00 0.01 O
ATOM 27 O5' C A 556 -71.753-106.104 -10.939 1.00 0.01 O
TER
ATOM 1 O3' G B 535 -80.867-114.150 -0.567 1.00 0.01 O
ATOM 2 P G B 536 -79.709-115.222 -0.761 1.00 0.01 P
ATOM 3 OP1 G B 536 -80.349-116.476 -1.283 1.00 0.01 O
ATOM 4 OP2 G B 536 -78.959-115.270 0.513 1.00 0.01 O
ATOM 5 O5' G B 536 -78.818-114.565 -1.887 1.00 0.01 O
ATOM 6 C5' G B 536 -78.867-115.067 -3.194 1.00 0.01 C
ATOM 7 C4' G B 536 -77.741-114.547 -4.032 1.00 0.01 C
ATOM 8 O4' G B 536 -77.526-113.149 -3.766 1.00 0.01 O
ATOM 9 C3' G B 536 -76.389-115.152 -3.793 1.00 0.01 C
ATOM 10 O3' G B 536 -76.261-116.438 -4.356 1.00 0.01 O
ATOM 11 C2' G B 536 -75.488-114.116 -4.428 1.00 0.01 C
ATOM 12 O2' G B 536 -75.572-114.190 -5.837 1.00 0.01 O
ATOM 13 C1' G B 536 -76.176-112.833 -3.990 1.00 0.01 C
ATOM 14 N9 G B 536 -75.619-112.289 -2.744 1.00 0.01 N
ATOM 15 C8 G B 536 -76.225-112.434 -1.544 1.00 0.01 C
ATOM 16 N7 G B 536 -75.604-111.848 -0.576 1.00 0.01 N
ATOM 17 C5 G B 536 -74.523-111.282 -1.189 1.00 0.01 C
ATOM 18 C6 G B 536 -73.495-110.541 -0.617 1.00 0.01 C
ATOM 19 O6 G B 536 -73.361-110.269 0.572 1.00 0.01 O
ATOM 20 N1 G B 536 -72.574-110.105 -1.528 1.00 0.01 N
ATOM 21 C2 G B 536 -72.644-110.382 -2.834 1.00 0.01 C
ATOM 22 N2 G B 536 -71.647-109.897 -3.558 1.00 0.01 N
ATOM 23 N3 G B 536 -73.598-111.091 -3.389 1.00 0.01 N
ATOM 24 C4 G B 536 -74.514-111.514 -2.516 1.00 0.01 C
ATOM 25 P A B 537 -75.307-117.512 -3.662 1.00 0.01 P
ATOM 26 OP1 A B 537 -76.000-118.823 -3.708 1.00 0.01 O
ATOM 27 OP2 A B 537 -74.923-116.953 -2.360 1.00 0.01 O
ATOM 28 O5' A B 537 -74.061-117.544 -4.614 1.00 0.01 O
TER
ATOM 2 P A A 555 -68.950-105.734 -5.426 1.00 0.01 P
ATOM 3 OP1 A A 555 -68.233-104.495 -5.176 1.00 0.01 O
ATOM 4 OP2 A A 555 -70.274-105.897 -4.855 1.00 0.01 O
ATOM 5 O5' A A 555 -68.989-106.016 -6.980 1.00 0.01 O
ATOM 6 C5' A A 555 -67.811-106.364 -7.685 1.00 0.01 C
ATOM 7 C4' A A 555 -68.142-107.019 -8.992 1.00 0.01 C
ATOM 8 O4' A A 555 -68.130-108.452 -8.843 1.00 0.01 O
ATOM 9 C3' A A 555 -69.505-106.699 -9.541 1.00 0.01 C
ATOM 10 O3' A A 555 -69.493-105.503 -10.264 1.00 0.01 O
ATOM 11 C2' A A 555 -69.827-107.920 -10.376 1.00 0.01 C
ATOM 12 O2' A A 555 -69.172-107.861 -11.623 1.00 0.01 O
ATOM 13 C1' A A 555 -69.192-109.023 -9.544 1.00 0.01 C
ATOM 14 N9 A A 555 -70.129-109.557 -8.549 1.00 0.04 N
ATOM 15 C8 A A 555 -70.189-109.190 -7.234 1.00 0.04 C
ATOM 16 N7 A A 555 -71.140-109.796 -6.583 1.00 0.04 N
ATOM 17 C5 A A 555 -71.740-110.624 -7.528 1.00 0.04 C
ATOM 18 C6 A A 555 -72.805-111.542 -7.481 1.00 0.04 C
ATOM 19 N6 A A 555 -73.525-111.813 -6.408 1.00 0.04 N
ATOM 20 N1 A A 555 -73.138-112.195 -8.594 1.00 0.04 N
ATOM 21 C2 A A 555 -72.443-111.949 -9.697 1.00 0.04 C
ATOM 22 N3 A A 555 -71.433-111.119 -9.878 1.00 0.04 N
ATOM 23 C4 A A 555 -71.121-110.482 -8.744 1.00 0.04 C
ATOM 24 P C A 556 -70.844-104.860 -10.743 1.00 0.01 P
ATOM 25 OP1 C A 556 -70.593-104.212 -12.050 1.00 0.01 O
ATOM 26 OP2 C A 556 -71.352-104.060 -9.652 1.00 0.01 O
ATOM 27 O5' C A 556 -71.753-106.104 -10.939 1.00 0.01 O
TER
ATOM 1 O3' G B 535 -80.867-114.150 -0.567 1.00 0.01 O
ATOM 2 P G B 536 -79.709-115.222 -0.761 1.00 0.01 P
ATOM 3 OP1 G B 536 -80.349-116.476 -1.283 1.00 0.01 O
ATOM 4 OP2 G B 536 -78.959-115.270 0.513 1.00 0.01 O
ATOM 5 O5' G B 536 -78.818-114.565 -1.887 1.00 0.01 O
ATOM 6 C5' G B 536 -78.867-115.067 -3.194 1.00 0.01 C
ATOM 7 C4' G B 536 -77.741-114.547 -4.032 1.00 0.01 C
ATOM 8 O4' G B 536 -77.526-113.149 -3.766 1.00 0.01 O
ATOM 9 C3' G B 536 -76.389-115.152 -3.793 1.00 0.01 C
ATOM 10 O3' G B 536 -76.261-116.438 -4.356 1.00 0.01 O
ATOM 11 C2' G B 536 -75.488-114.116 -4.428 1.00 0.01 C
ATOM 12 O2' G B 536 -75.572-114.190 -5.837 1.00 0.01 O
ATOM 13 C1' G B 536 -76.176-112.833 -3.990 1.00 0.01 C
ATOM 14 N9 G B 536 -75.619-112.289 -2.744 1.00 0.01 N
ATOM 15 C8 G B 536 -76.225-112.434 -1.544 1.00 0.01 C
ATOM 16 N7 G B 536 -75.604-111.848 -0.576 1.00 0.01 N
ATOM 17 C5 G B 536 -74.523-111.282 -1.189 1.00 0.01 C
ATOM 18 C6 G B 536 -73.495-110.541 -0.617 1.00 0.01 C
ATOM 19 O6 G B 536 -73.361-110.269 0.572 1.00 0.01 O
ATOM 20 N1 G B 536 -72.574-110.105 -1.528 1.00 0.01 N
ATOM 21 C2 G B 536 -72.644-110.382 -2.834 1.00 0.01 C
ATOM 22 N2 G B 536 -71.647-109.897 -3.558 1.00 0.01 N
ATOM 23 N3 G B 536 -73.598-111.091 -3.389 1.00 0.01 N
ATOM 24 C4 G B 536 -74.514-111.514 -2.516 1.00 0.01 C
ATOM 25 P A B 537 -75.307-117.512 -3.662 1.00 0.01 P
ATOM 26 OP1 A B 537 -76.000-118.823 -3.708 1.00 0.01 O
ATOM 27 OP2 A B 537 -74.923-116.953 -2.360 1.00 0.01 O
ATOM 28 O5' A B 537 -74.061-117.544 -4.614 1.00 0.01 O
TER
Atoms:
OP1: (-68.233,-104.495,-5.176)
OP2: (-70.274,-105.897,-4.855)
C3': (-69.505,-106.699,-9.541)
C1': (-69.192,-109.023,-9.544)
C5': (-67.811,-106.364,-7.685)
O4': (-68.130,-108.452,-8.843)
C8: (-70.189,-109.190,-7.234)
O2': (-69.172,-107.861,-11.623)
C6: (-72.805,-111.542,-7.481)
C5: (-71.740,-110.624,-7.528)
C4: (-71.121,-110.482,-8.744)
P: (-68.950,-105.734,-5.426)
C4': (-68.142,-107.019,-8.992)
C2': (-69.827,-107.920,-10.376)
C2: (-72.443,-111.949,-9.697)
N1: (-73.138,-112.195,-8.594)
N3: (-71.433,-111.119,-9.878)
N6: (-73.525,-111.813,-6.408)
N7: (-71.140,-109.796,-6.583)
N9: (-70.129,-109.557,-8.549)
O5': (-68.989,-106.016,-6.980)
O3': (-69.493,-105.503,-10.264)
OP2: (-70.274,-105.897,-4.855)
C3': (-69.505,-106.699,-9.541)
C1': (-69.192,-109.023,-9.544)
C5': (-67.811,-106.364,-7.685)
O4': (-68.130,-108.452,-8.843)
C8: (-70.189,-109.190,-7.234)
O2': (-69.172,-107.861,-11.623)
C6: (-72.805,-111.542,-7.481)
C5: (-71.740,-110.624,-7.528)
C4: (-71.121,-110.482,-8.744)
P: (-68.950,-105.734,-5.426)
C4': (-68.142,-107.019,-8.992)
C2': (-69.827,-107.920,-10.376)
C2: (-72.443,-111.949,-9.697)
N1: (-73.138,-112.195,-8.594)
N3: (-71.433,-111.119,-9.878)
N6: (-73.525,-111.813,-6.408)
N7: (-71.140,-109.796,-6.583)
N9: (-70.129,-109.557,-8.549)
O5': (-68.989,-106.016,-6.980)
O3': (-69.493,-105.503,-10.264)
OP1: (-80.349,-116.476,-1.283)
OP2: (-78.959,-115.270,0.513)
C3': (-76.389,-115.152,-3.793)
C1': (-76.176,-112.833,-3.990)
C5': (-78.867,-115.067,-3.194)
O6: (-73.361,-110.269,0.572)
O4': (-77.526,-113.149,-3.766)
C8: (-76.225,-112.434,-1.544)
C2: (-72.644,-110.382,-2.834)
C6: (-73.495,-110.541,-0.617)
C5: (-74.523,-111.282,-1.189)
C4: (-74.514,-111.514,-2.516)
P: (-79.709,-115.222,-0.761)
C4': (-77.741,-114.547,-4.032)
C2': (-75.488,-114.116,-4.428)
O2': (-75.572,-114.190,-5.837)
N1: (-72.574,-110.105,-1.528)
N2: (-71.647,-109.897,-3.558)
N3: (-73.598,-111.091,-3.389)
N7: (-75.604,-111.848,-0.576)
N9: (-75.619,-112.289,-2.744)
O5': (-78.818,-114.565,-1.887)
O3': (-76.261,-116.438,-4.356)
OP2: (-78.959,-115.270,0.513)
C3': (-76.389,-115.152,-3.793)
C1': (-76.176,-112.833,-3.990)
C5': (-78.867,-115.067,-3.194)
O6: (-73.361,-110.269,0.572)
O4': (-77.526,-113.149,-3.766)
C8: (-76.225,-112.434,-1.544)
C2: (-72.644,-110.382,-2.834)
C6: (-73.495,-110.541,-0.617)
C5: (-74.523,-111.282,-1.189)
C4: (-74.514,-111.514,-2.516)
P: (-79.709,-115.222,-0.761)
C4': (-77.741,-114.547,-4.032)
C2': (-75.488,-114.116,-4.428)
O2': (-75.572,-114.190,-5.837)
N1: (-72.574,-110.105,-1.528)
N2: (-71.647,-109.897,-3.558)
N3: (-73.598,-111.091,-3.389)
N7: (-75.604,-111.848,-0.576)
N9: (-75.619,-112.289,-2.744)
O5': (-78.818,-114.565,-1.887)
O3': (-76.261,-116.438,-4.356)
Image (generated by PyMOL):